Wall clock time and date at job start Tue Mar 31 2020 22:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99493 * 2 1 4 4 H 1.48503 * 109.46833 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47012 * 299.99889 * 3 2 1 6 6 H 1.48496 * 109.47485 * 60.00352 * 3 2 1 7 7 C 1.38809 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00067 * 163.65141 * 7 2 1 9 9 N 1.36929 * 120.00083 * 343.64649 * 7 2 1 10 10 C 1.47172 * 121.22685 * 335.08062 * 9 7 2 11 11 C 1.53229 * 108.69726 * 230.97260 * 10 9 7 12 12 O 1.43074 * 109.44561 * 308.40928 * 11 10 9 13 13 C 1.42693 * 113.87493 * 61.64626 * 12 11 10 14 14 H 1.09002 * 108.92646 * 54.94976 * 13 12 11 15 15 C 1.52504 * 110.61942 * 174.65665 * 13 12 11 16 16 C 1.53159 * 109.79461 * 61.28612 * 15 13 12 17 17 N 1.46985 * 108.43722 * 54.53572 * 16 15 13 18 18 C 1.34776 * 120.72165 * 125.47154 * 17 16 15 19 19 O 1.21714 * 120.00237 * 180.82446 * 18 17 16 20 20 C 1.46557 * 119.99731 * 0.81857 * 18 17 16 21 21 C 1.37934 * 126.22873 * 205.83899 * 20 18 17 22 22 C 1.39756 * 107.11599 * 180.02562 * 21 20 18 23 23 C 1.35654 * 107.88896 * 359.97438 * 22 21 20 24 24 Cl 1.73599 * 125.57687 * 180.02562 * 23 22 21 25 25 N 1.35575 * 108.84949 * 359.73392 * 23 22 21 26 26 H 0.96999 * 125.70304 * 180.28062 * 25 23 22 27 27 C 1.46789 * 118.55921 * 305.45264 * 17 16 15 28 28 C 1.47589 * 121.22671 * 155.09986 * 9 7 2 29 29 H 1.09005 * 111.16945 * 7.17395 * 28 9 7 30 30 H 0.96995 * 120.00542 * 359.97438 * 1 2 3 31 31 H 1.09006 * 109.59803 * 350.73592 * 10 9 7 32 32 H 1.09003 * 109.60154 * 111.20603 * 10 9 7 33 33 H 1.09004 * 109.47538 * 188.41188 * 11 10 9 34 34 H 1.09000 * 109.47697 * 68.40080 * 11 10 9 35 35 H 1.08997 * 109.41884 * 181.38807 * 15 13 12 36 36 H 1.08998 * 109.41639 * 301.19415 * 15 13 12 37 37 H 1.09005 * 109.64157 * 174.21943 * 16 15 13 38 38 H 1.09000 * 109.64572 * 294.85387 * 16 15 13 39 39 H 1.07994 * 126.44242 * 0.03401 * 21 20 18 40 40 H 1.07998 * 126.05109 * 180.02562 * 22 21 20 41 41 H 1.08998 * 109.52315 * 174.19571 * 27 17 16 42 42 H 1.08999 * 109.51902 * 294.37773 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0575 -1.2209 -0.2638 9 7 1.3673 -2.3641 0.3328 10 6 0.1698 -2.3551 1.1884 11 6 0.3715 -3.3613 2.3263 12 8 0.7604 -4.6255 1.7809 13 6 1.9943 -4.5907 1.0650 14 1 2.7684 -4.1819 1.7144 15 6 2.4030 -5.9943 0.6307 16 6 1.3393 -6.5785 -0.3036 17 7 1.1303 -5.6395 -1.4149 18 6 1.2465 -6.0492 -2.6936 19 8 1.0855 -5.2570 -3.6035 20 6 1.5670 -7.4486 -2.9884 21 6 2.1916 -7.9200 -4.1243 22 6 2.2963 -9.3072 -3.9905 23 6 1.7462 -9.6536 -2.7999 24 17 1.6331 -11.2678 -2.1711 25 7 1.3049 -8.5324 -2.1785 26 1 0.8740 -8.4989 -1.3101 27 6 0.7919 -4.2459 -1.1018 28 6 1.8498 -3.6719 -0.1522 29 1 2.8056 -3.5727 -0.6667 30 1 -0.4851 0.8400 0.0004 31 1 0.0246 -1.3577 1.6036 32 1 -0.7024 -2.6390 0.5995 33 1 -0.5605 -3.4755 2.8799 34 1 1.1508 -2.9998 2.9972 35 1 3.3584 -5.9481 0.1081 36 1 2.5023 -6.6311 1.5097 37 1 1.6808 -7.5375 -0.6935 38 1 0.4057 -6.7132 0.2427 39 1 2.5353 -7.3284 -4.9599 40 1 2.7378 -9.9833 -4.7076 41 1 0.7717 -3.6606 -2.0211 42 1 -0.1866 -4.2075 -0.6231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074336233.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:13 Heat of formation + Delta-G solvation = 17.442389 kcal Electronic energy + Delta-G solvation = -28255.617780 eV Core-core repulsion = 24264.340424 eV Total energy + Delta-G solvation = -3991.277357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75937 -39.84815 -38.40835 -36.99294 -35.97778 -34.72330 -32.20177 -31.67717 -31.35651 -29.84641 -29.08132 -27.40095 -25.28221 -24.04257 -22.98133 -22.24115 -21.33865 -21.09456 -20.37718 -18.75148 -17.79688 -17.01388 -16.66476 -15.68028 -15.64737 -15.54277 -15.16307 -14.74473 -14.61253 -14.27644 -14.06117 -13.88041 -13.72944 -13.23709 -13.20040 -12.87060 -12.71238 -12.50982 -12.40590 -12.10220 -11.97271 -11.57916 -11.46955 -11.12373 -11.02791 -10.85660 -10.67327 -10.29893 -10.25823 -10.08710 -9.85230 -9.71872 -9.32555 -9.08727 -8.70565 -8.49288 -8.26269 -6.84237 -5.90648 -3.34404 1.23041 1.34487 2.35708 2.89991 3.03070 3.31451 3.38786 3.39893 3.41630 4.21743 4.35259 4.43634 4.71646 4.92634 5.00715 5.04081 5.17335 5.23533 5.28020 5.46283 5.60857 5.65546 5.67167 5.83217 5.87421 5.94716 5.96456 6.06699 6.17608 6.26317 6.30387 6.34534 6.49555 6.54286 6.65224 6.78503 6.88149 7.02917 7.43345 7.53881 7.66000 7.80378 8.22003 8.26905 9.03495 9.64886 10.20785 11.16663 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020578 B = 0.003078 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.327167 B = 9095.197633 C = 9938.539535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.071 0.929 9 N -0.584 5.584 10 C 0.136 3.864 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.080 3.920 14 H 0.054 0.946 15 C -0.120 4.120 16 C 0.092 3.908 17 N -0.601 5.601 18 C 0.582 3.418 19 O -0.522 6.522 20 C -0.017 4.017 21 C -0.109 4.109 22 C -0.173 4.173 23 C 0.073 3.927 24 Cl -0.020 7.020 25 N -0.535 5.535 26 H 0.425 0.575 27 C 0.105 3.895 28 C 0.134 3.866 29 H 0.076 0.924 30 H 0.256 0.744 31 H 0.101 0.899 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.093 0.907 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -19.975 0.119 20.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.089 0.911 9 N -0.306 5.306 10 C 0.010 3.990 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.021 3.979 14 H 0.072 0.928 15 C -0.159 4.159 16 C -0.032 4.032 17 N -0.334 5.334 18 C 0.369 3.631 19 O -0.398 6.398 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.199 4.199 23 C -0.068 4.068 24 Cl 0.008 6.992 25 N -0.142 5.142 26 H 0.271 0.729 27 C -0.018 4.018 28 C 0.026 3.974 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.119 0.881 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.111 0.889 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.763 -19.591 -0.118 19.785 hybrid contribution 0.215 0.881 0.584 1.079 sum 2.978 -18.709 0.467 18.950 Atomic orbital electron populations 1.70012 1.05243 1.25706 1.53535 1.25042 0.95388 0.98510 1.00523 0.86150 0.79307 0.83540 0.77348 1.20188 1.21544 1.21487 1.19236 0.92533 0.84046 1.42532 0.91141 1.44314 1.31534 1.00477 1.54251 1.21533 0.88528 0.99010 0.89909 1.23352 0.98754 0.84770 0.96984 1.87700 1.39546 1.32030 1.71529 1.22214 0.86944 0.94375 0.94411 0.92756 1.21765 0.98467 0.96436 0.99208 1.22144 1.00322 0.92233 0.88522 1.48257 1.68573 1.12152 1.04447 1.17048 0.77796 0.85238 0.83045 1.90881 1.50553 1.53675 1.44698 1.20645 1.11231 0.86958 0.94206 1.21283 1.01309 0.93690 0.97180 1.20658 1.07253 0.95732 0.96288 1.21067 1.08469 0.81719 0.95562 1.98398 1.97348 1.16136 1.87303 1.43025 1.47736 1.05006 1.18420 0.72912 1.22443 0.99965 0.78180 1.01191 1.21591 0.96699 0.87148 0.92011 0.90567 0.93434 0.88128 0.95369 0.90077 0.94026 0.90169 0.90245 0.90321 0.90100 0.82544 0.82950 0.88873 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.17 11.01 55.49 0.61 -24.56 16 2 C 0.00 0.11 4.98 -17.43 -0.09 0.03 16 3 Si 0.91 21.20 29.58 -169.99 -5.03 16.18 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.72 9.73 -15.06 -0.15 -6.86 16 8 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 9 N -0.58 -13.87 2.72 -163.87 -0.45 -14.31 16 10 C 0.14 3.06 4.95 -3.56 -0.02 3.04 16 11 C 0.04 0.72 6.97 37.28 0.26 0.98 16 12 O -0.39 -6.83 9.59 -35.23 -0.34 -7.17 16 13 C 0.08 1.34 2.72 -26.89 -0.07 1.27 16 14 H 0.05 0.95 8.12 -51.93 -0.42 0.53 16 15 C -0.12 -1.51 5.82 -26.90 -0.16 -1.67 16 16 C 0.09 1.11 5.42 -3.69 -0.02 1.09 16 17 N -0.60 -9.54 2.96 -174.36 -0.52 -10.06 16 18 C 0.58 9.67 7.63 -12.91 -0.10 9.57 16 19 O -0.52 -10.75 16.39 5.18 0.08 -10.66 16 20 C -0.02 -0.22 6.46 -81.93 -0.53 -0.75 16 21 C -0.11 -1.30 10.74 -39.13 -0.42 -1.72 16 22 C -0.17 -1.73 10.78 -39.94 -0.43 -2.16 16 23 C 0.07 0.72 7.74 -16.82 -0.13 0.59 16 24 Cl -0.02 -0.16 29.30 -51.86 -1.52 -1.68 16 25 N -0.53 -5.53 4.81 -6.54 -0.03 -5.56 16 26 H 0.43 3.66 6.18 -40.82 -0.25 3.41 16 27 C 0.11 2.07 5.62 -3.72 -0.02 2.05 16 28 C 0.13 2.69 3.00 -67.08 -0.20 2.49 16 29 H 0.08 1.57 8.03 -51.93 -0.42 1.16 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.10 2.53 6.00 -51.93 -0.31 2.22 16 32 H 0.03 0.68 7.17 -51.93 -0.37 0.31 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.77 3.67 -51.93 -0.19 0.58 16 38 H 0.08 0.96 7.94 -51.93 -0.41 0.55 16 39 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.09 2.13 6.99 -51.93 -0.36 1.77 16 42 H 0.07 1.49 6.56 -51.93 -0.34 1.15 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -30.27 345.82 -9.21 -39.48 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.17 Total: 5.20 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.07 Total: 7.94 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.38 Total: -54.49 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.25 Total: -17.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.27 -9.21 -39.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336233.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.927 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds