Wall clock time and date at job start Tue Mar 31 2020 22:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00168 * 2 1 4 4 H 1.48499 * 109.47099 * 239.99594 * 3 2 1 5 5 H 1.48498 * 109.47302 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46957 * 119.99912 * 3 2 1 7 7 C 1.38815 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99741 * 195.83941 * 7 2 1 9 9 N 1.36934 * 119.99999 * 15.83752 * 7 2 1 10 10 C 1.47172 * 121.22748 * 26.23766 * 9 7 2 11 11 C 1.53231 * 108.69461 * 129.02137 * 10 9 7 12 12 O 1.43063 * 109.45203 * 51.58585 * 11 10 9 13 13 C 1.42696 * 113.87503 * 298.35654 * 12 11 10 14 14 H 1.09001 * 108.38627 * 304.71698 * 13 12 11 15 15 C 1.52503 * 110.62204 * 185.34479 * 13 12 11 16 16 C 1.53153 * 109.79759 * 298.71255 * 15 13 12 17 17 N 1.46977 * 108.44682 * 305.48621 * 16 15 13 18 18 C 1.34777 * 120.71611 * 234.50782 * 17 16 15 19 19 O 1.21710 * 120.00233 * 179.36604 * 18 17 16 20 20 C 1.46553 * 120.00083 * 359.36215 * 18 17 16 21 21 C 1.37931 * 126.23418 * 154.45796 * 20 18 17 22 22 C 1.39749 * 107.12182 * 179.97438 * 21 20 18 23 23 C 1.35654 * 107.88656 * 0.02562 * 22 21 20 24 24 Cl 1.73606 * 125.57529 * 179.97438 * 23 22 21 25 25 N 1.35580 * 108.85009 * 359.97438 * 23 22 21 26 26 H 0.96997 * 125.69815 * 179.97438 * 25 23 22 27 27 C 1.46793 * 118.56917 * 54.77594 * 17 16 15 28 28 C 1.47601 * 121.22665 * 206.20815 * 9 7 2 29 29 H 1.09005 * 110.31268 * 352.34315 * 28 9 7 30 30 H 0.96998 * 119.99932 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.59720 * 248.78669 * 10 9 7 32 32 H 1.08998 * 109.59956 * 9.25780 * 10 9 7 33 33 H 1.09002 * 109.47193 * 171.57795 * 11 10 9 34 34 H 1.08994 * 109.47534 * 291.58238 * 11 10 9 35 35 H 1.09006 * 109.41666 * 178.61992 * 15 13 12 36 36 H 1.09002 * 109.41824 * 58.82064 * 15 13 12 37 37 H 1.08993 * 109.64671 * 185.79306 * 16 15 13 38 38 H 1.09007 * 109.81349 * 65.26922 * 16 15 13 39 39 H 1.07997 * 126.43596 * 0.23598 * 21 20 18 40 40 H 1.08003 * 126.05350 * 180.02562 * 22 21 20 41 41 H 1.08996 * 109.51754 * 65.37433 * 27 17 16 42 42 H 1.08999 * 109.52381 * 185.56240 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0595 -1.2199 0.2558 9 7 1.3645 -2.3657 -0.3226 10 6 0.1771 -2.3632 -1.1922 11 6 0.3865 -3.3878 -2.3122 12 8 0.7620 -4.6455 -1.7432 13 6 1.9876 -4.6065 -1.0135 14 1 2.7660 -4.2163 -1.6693 15 6 2.3836 -6.0054 -0.5532 16 6 1.3059 -6.5698 0.3772 17 7 1.0886 -5.6129 1.4714 18 6 1.1872 -6.0037 2.7575 19 8 1.0160 -5.1978 3.6533 20 6 1.5004 -7.3992 3.0773 21 6 2.1038 -7.8556 4.2306 22 6 2.2090 -9.2446 4.1179 23 6 1.6799 -9.6069 2.9225 24 17 1.5759 -11.2295 2.3141 25 7 1.2455 -8.4945 2.2806 26 1 0.8260 -8.4730 1.4063 27 6 0.7560 -4.2236 1.1334 28 6 1.8339 -3.6686 0.1879 29 1 2.7883 -3.5522 0.7015 30 1 -0.4850 0.8400 0.0004 31 1 -0.7035 -2.6333 -0.6094 32 1 0.0424 -1.3716 -1.6242 33 1 -0.5396 -3.5054 -2.8748 34 1 1.1754 -3.0406 -2.9794 35 1 3.3330 -5.9563 -0.0200 36 1 2.4898 -6.6560 -1.4214 37 1 1.6376 -7.5243 0.7857 38 1 0.3772 -6.7109 -0.1758 39 1 2.4295 -7.2533 5.0657 40 1 2.6360 -9.9114 4.8524 41 1 -0.2159 -4.1913 0.6411 42 1 0.7244 -3.6248 2.0436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074336234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:15 Heat of formation + Delta-G solvation = 17.174666 kcal Electronic energy + Delta-G solvation = -28256.129795 eV Core-core repulsion = 24264.840829 eV Total energy + Delta-G solvation = -3991.288966 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.75740 -39.83383 -38.40559 -36.99093 -35.97303 -34.71159 -32.18837 -31.67509 -31.35191 -29.84117 -29.07775 -27.38598 -25.27606 -24.04041 -22.97956 -22.23449 -21.33610 -21.09318 -20.37480 -18.75445 -17.79345 -17.00311 -16.65935 -15.67823 -15.63412 -15.53673 -15.14922 -14.74039 -14.61687 -14.27638 -14.06523 -13.87704 -13.73441 -13.22870 -13.19293 -12.86614 -12.70704 -12.50550 -12.40106 -12.09552 -11.97122 -11.57638 -11.46704 -11.11475 -11.02502 -10.83494 -10.67393 -10.31262 -10.29320 -10.08814 -9.85149 -9.71389 -9.32208 -9.08220 -8.69581 -8.49141 -8.26164 -6.82275 -5.90507 -3.35243 1.23243 1.34625 2.36035 2.90169 3.03700 3.33360 3.38744 3.38958 3.40246 4.21841 4.35629 4.43836 4.71729 4.93117 5.01119 5.04350 5.17944 5.24187 5.28221 5.46319 5.61292 5.65123 5.67287 5.83478 5.87528 5.94947 5.96665 6.06851 6.18644 6.26510 6.30668 6.35273 6.49703 6.54596 6.65108 6.78811 6.88389 7.02459 7.42725 7.54296 7.65863 7.80355 8.22784 8.27620 9.03826 9.65022 10.21754 11.16988 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.003084 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.327514 B = 9076.161985 C = 9926.635192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.006 3.994 3 Si 0.908 3.092 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.137 3.863 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.080 3.920 14 H 0.054 0.946 15 C -0.120 4.120 16 C 0.092 3.908 17 N -0.601 5.601 18 C 0.582 3.418 19 O -0.522 6.522 20 C -0.017 4.017 21 C -0.109 4.109 22 C -0.173 4.173 23 C 0.073 3.927 24 Cl -0.020 7.020 25 N -0.535 5.535 26 H 0.425 0.575 27 C 0.107 3.893 28 C 0.135 3.865 29 H 0.077 0.923 30 H 0.257 0.743 31 H 0.029 0.971 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.072 0.928 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 -19.914 0.182 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.011 3.989 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.021 3.979 14 H 0.072 0.928 15 C -0.159 4.159 16 C -0.032 4.032 17 N -0.335 5.335 18 C 0.369 3.631 19 O -0.398 6.398 20 C -0.130 4.130 21 C -0.135 4.135 22 C -0.199 4.199 23 C -0.068 4.068 24 Cl 0.008 6.992 25 N -0.142 5.142 26 H 0.271 0.729 27 C -0.016 4.016 28 C 0.026 3.974 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.090 0.910 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.606 -19.518 0.412 19.696 hybrid contribution 0.246 0.869 -0.595 1.082 sum 2.852 -18.649 -0.183 18.867 Atomic orbital electron populations 1.69992 1.05264 1.25960 1.53213 1.25069 0.95382 0.98527 1.00304 0.86288 0.78874 0.82912 0.78215 1.20955 1.21512 1.20689 1.19139 0.92279 0.83999 1.43246 0.91300 1.44303 1.32454 1.00826 1.52996 1.21497 0.88796 0.98615 0.89971 1.23346 0.98847 0.84955 0.96705 1.87697 1.40462 1.32481 1.70234 1.22239 0.87081 0.94403 0.94203 0.92799 1.21764 0.98406 0.96541 0.99152 1.22135 1.00216 0.91937 0.88913 1.48263 1.68667 1.12095 1.04425 1.17047 0.77808 0.85319 0.82962 1.90880 1.50348 1.52606 1.45970 1.20645 1.11468 0.86709 0.94214 1.21282 1.01484 0.93797 0.96902 1.20657 1.07521 0.95584 0.96168 1.21070 1.08700 0.81738 0.95317 1.98398 1.97383 1.15341 1.88071 1.43028 1.48120 1.04949 1.18101 0.72902 1.22512 0.99865 0.78338 1.00914 1.21699 0.96617 0.87154 0.91948 0.90494 0.93316 0.95328 0.88397 0.90092 0.94041 0.90157 0.90260 0.90358 0.90130 0.82541 0.82951 0.91005 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.20 11.08 55.49 0.61 -24.58 16 2 C 0.01 0.17 4.98 -17.43 -0.09 0.09 16 3 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.26 -6.81 9.70 -15.06 -0.15 -6.95 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.58 -13.88 2.72 -163.61 -0.44 -14.33 16 10 C 0.14 3.08 4.93 -3.56 -0.02 3.07 16 11 C 0.04 0.72 6.97 37.28 0.26 0.98 16 12 O -0.39 -6.85 9.59 -35.23 -0.34 -7.19 16 13 C 0.08 1.35 2.73 -26.89 -0.07 1.27 16 14 H 0.05 0.94 8.11 -51.93 -0.42 0.52 16 15 C -0.12 -1.51 5.82 -26.91 -0.16 -1.67 16 16 C 0.09 1.11 5.42 -3.70 -0.02 1.09 16 17 N -0.60 -9.56 2.95 -174.10 -0.51 -10.07 16 18 C 0.58 9.68 7.63 -12.91 -0.10 9.59 16 19 O -0.52 -10.76 16.39 5.18 0.08 -10.68 16 20 C -0.02 -0.22 6.46 -81.93 -0.53 -0.75 16 21 C -0.11 -1.30 10.74 -39.13 -0.42 -1.72 16 22 C -0.17 -1.73 10.78 -39.94 -0.43 -2.16 16 23 C 0.07 0.72 7.74 -16.82 -0.13 0.59 16 24 Cl -0.02 -0.16 29.30 -51.86 -1.52 -1.68 16 25 N -0.53 -5.54 4.82 -6.54 -0.03 -5.57 16 26 H 0.43 3.66 6.17 -40.82 -0.25 3.41 16 27 C 0.11 2.10 5.64 -3.49 -0.02 2.08 16 28 C 0.13 2.70 3.04 -66.84 -0.20 2.49 16 29 H 0.08 1.59 7.99 -51.93 -0.42 1.18 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.03 0.69 7.17 -51.93 -0.37 0.32 16 32 H 0.10 2.46 6.09 -51.93 -0.32 2.14 16 33 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.77 3.65 -51.93 -0.19 0.58 16 38 H 0.08 0.96 7.96 -51.93 -0.41 0.55 16 39 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 41 H 0.07 1.50 6.57 -51.93 -0.34 1.15 16 42 H 0.09 2.14 6.99 -51.93 -0.36 1.78 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -30.27 345.92 -9.21 -39.47 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.17 Total: 5.25 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.07 Total: 7.99 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.38 Total: -54.55 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.25 Total: -17.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.68 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.27 -9.21 -39.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.648 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds