Wall clock time and date at job start Tue Mar 31 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47419 * 270.00176 * 3 2 1 5 5 H 1.48502 * 109.46750 * 30.00338 * 3 2 1 6 6 H 1.48500 * 109.47060 * 149.99659 * 3 2 1 7 7 C 1.38815 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99799 * 190.27883 * 7 2 1 9 9 N 1.36933 * 120.00074 * 10.26844 * 7 2 1 10 10 C 1.47227 * 121.32942 * 30.15292 * 9 7 2 11 11 C 1.53197 * 108.86827 * 129.70951 * 10 9 7 12 12 O 1.43153 * 109.69482 * 51.22570 * 11 10 9 13 13 C 1.42599 * 113.63311 * 298.34419 * 12 11 10 14 14 H 1.09007 * 109.34294 * 303.92490 * 13 12 11 15 15 C 1.52787 * 111.11203 * 183.61346 * 13 12 11 16 16 C 1.53366 * 108.81792 * 177.46847 * 15 13 12 17 17 N 1.46845 * 109.24817 * 53.83366 * 16 15 13 18 18 C 1.34777 * 120.40900 * 127.72907 * 17 16 15 19 19 O 1.21710 * 119.99636 * 188.04418 * 18 17 16 20 20 C 1.46553 * 120.00126 * 8.04225 * 18 17 16 21 21 C 1.37926 * 126.23005 * 206.60621 * 20 18 17 22 22 C 1.39752 * 107.12118 * 179.87908 * 21 20 18 23 23 C 1.35661 * 107.88196 * 0.38071 * 22 21 20 24 24 Cl 1.73602 * 125.57063 * 179.75877 * 23 22 21 25 25 N 1.35573 * 108.85345 * 359.76270 * 23 22 21 26 26 H 0.97000 * 125.70030 * 180.02562 * 25 23 22 27 27 C 1.47127 * 119.17761 * 307.75052 * 17 16 15 28 28 C 1.46873 * 121.30854 * 210.12858 * 9 7 2 29 29 H 1.09000 * 109.65689 * 112.37549 * 28 9 7 30 30 H 0.96997 * 120.00026 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.51290 * 9.91959 * 10 9 7 32 32 H 1.09000 * 109.59103 * 249.54510 * 10 9 7 33 33 H 1.08992 * 109.42691 * 291.17301 * 11 10 9 34 34 H 1.09001 * 109.42616 * 171.27731 * 11 10 9 35 35 H 1.09003 * 109.57900 * 297.26712 * 15 13 12 36 36 H 1.08998 * 109.57787 * 57.66867 * 15 13 12 37 37 H 1.09006 * 109.50889 * 293.90701 * 16 15 13 38 38 H 1.08998 * 109.51338 * 173.76901 * 16 15 13 39 39 H 1.08003 * 126.44087 * 0.02562 * 21 20 18 40 40 H 1.07995 * 126.06007 * 180.14438 * 22 21 20 41 41 H 1.09004 * 109.72594 * 293.56150 * 27 17 16 42 42 H 1.09004 * 109.76395 * 172.91885 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6525 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0773 -1.2097 0.1664 9 7 1.3420 -2.3785 -0.2125 10 6 0.1318 -2.4314 -1.0492 11 6 0.2890 -3.5563 -2.0771 12 8 0.6647 -4.7676 -1.4131 13 6 1.9147 -4.6822 -0.7323 14 1 2.6892 -4.3774 -1.4362 15 6 2.3013 -6.0279 -0.1208 16 6 3.6781 -5.8932 0.5413 17 7 3.6532 -4.7692 1.4859 18 6 4.0554 -4.9404 2.7608 19 8 3.8958 -4.0492 3.5741 20 6 4.6849 -6.1998 3.1677 21 6 4.6838 -6.7388 4.4373 22 6 5.3931 -7.9413 4.3744 23 6 5.8147 -8.1098 3.0960 24 17 6.7451 -9.4524 2.5082 25 7 5.3908 -7.0582 2.3526 26 1 5.5563 -6.9314 1.4053 27 6 3.1831 -3.4540 1.0235 28 6 1.8047 -3.6376 0.3857 29 1 1.0861 -3.9744 1.1328 30 1 -0.4850 0.8400 0.0004 31 1 0.0043 -1.4800 -1.5655 32 1 -0.7377 -2.6284 -0.4221 33 1 1.0600 -3.2838 -2.7977 34 1 -0.6569 -3.7066 -2.5976 35 1 1.5626 -6.3148 0.6277 36 1 2.3448 -6.7856 -0.9031 37 1 4.4332 -5.7095 -0.2231 38 1 3.9166 -6.8127 1.0758 39 1 4.2198 -6.3129 5.3146 40 1 5.5767 -8.6149 5.1983 41 1 3.8790 -3.0528 0.2866 42 1 3.1090 -2.7707 1.8695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074336236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:21 Heat of formation + Delta-G solvation = 7.669720 kcal Electronic energy + Delta-G solvation = -28102.797570 eV Core-core repulsion = 24111.096439 eV Total energy + Delta-G solvation = -3991.701131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76998 -39.83206 -38.44693 -37.03616 -36.24290 -34.76868 -32.23277 -31.54834 -31.35905 -30.10548 -29.18338 -27.09150 -25.43464 -24.11599 -22.81731 -22.04117 -21.17394 -20.84701 -20.29384 -19.72575 -17.96389 -16.90120 -16.76509 -15.77125 -15.65426 -15.49084 -15.13308 -14.72515 -14.52907 -14.33809 -14.12923 -13.75061 -13.69461 -13.25750 -13.16402 -12.99209 -12.87233 -12.73372 -12.62906 -12.02251 -11.96910 -11.61586 -11.43510 -11.05015 -11.01951 -10.92281 -10.68169 -10.33209 -10.25039 -10.09856 -9.98921 -9.67097 -9.38837 -9.05527 -8.61369 -8.59002 -8.35817 -6.74571 -5.87953 -3.38131 1.17093 1.29857 2.30680 2.83467 2.90237 3.30488 3.32467 3.39982 3.41050 4.15691 4.36738 4.40325 4.63754 4.91110 4.95810 5.01200 5.17517 5.26888 5.31096 5.34215 5.56992 5.60769 5.64904 5.74743 5.81629 5.84293 6.02603 6.05854 6.15508 6.23427 6.27387 6.37516 6.46008 6.53096 6.60384 6.78973 6.82568 7.08338 7.39644 7.48753 7.65896 7.83242 8.13556 8.30061 9.06093 9.67710 10.26584 11.19787 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003225 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.077323 B = 8678.806247 C = 9768.147533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.010 3.990 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.143 3.857 11 C 0.038 3.962 12 O -0.389 6.389 13 C 0.077 3.923 14 H 0.052 0.948 15 C -0.122 4.122 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.586 3.414 19 O -0.515 6.515 20 C -0.020 4.020 21 C -0.106 4.106 22 C -0.173 4.173 23 C 0.077 3.923 24 Cl -0.019 7.019 25 N -0.534 5.534 26 H 0.423 0.577 27 C 0.125 3.875 28 C 0.137 3.863 29 H 0.039 0.961 30 H 0.256 0.744 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.040 0.960 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.158 0.842 40 H 0.154 0.846 41 H 0.075 0.925 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -17.917 1.165 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.190 4.190 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.070 0.930 15 C -0.161 4.161 16 C -0.027 4.027 17 N -0.343 5.343 18 C 0.373 3.627 19 O -0.390 6.390 20 C -0.133 4.133 21 C -0.132 4.132 22 C -0.199 4.199 23 C -0.065 4.065 24 Cl 0.009 6.991 25 N -0.137 5.137 26 H 0.265 0.735 27 C 0.004 3.996 28 C 0.029 3.971 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.093 0.907 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.100 -17.456 1.389 20.215 hybrid contribution 0.636 0.941 -0.714 1.342 sum 10.736 -16.515 0.675 19.710 Atomic orbital electron populations 1.69969 1.05315 1.25767 1.53418 1.25175 0.95433 0.98500 0.99875 0.86238 0.79196 0.83359 0.77677 1.21343 1.21512 1.20198 1.19108 0.90921 0.83384 1.45629 0.91172 1.43957 1.30293 1.02598 1.54340 1.21429 0.88518 0.96948 0.91340 1.23366 0.98852 0.86212 0.95509 1.87743 1.37904 1.35657 1.69472 1.22405 0.86572 0.94735 0.94563 0.93037 1.21806 0.96021 0.97714 1.00539 1.22013 0.98432 0.89558 0.92691 1.48223 1.64476 1.11993 1.09630 1.17015 0.78582 0.85038 0.82032 1.90894 1.56088 1.41504 1.50485 1.20569 1.06514 0.94670 0.91554 1.21300 1.01436 0.94947 0.95544 1.20667 1.04915 1.00005 0.94324 1.21035 1.04803 0.88628 0.92039 1.98402 1.70900 1.40710 1.89042 1.42589 1.42571 1.17044 1.11543 0.73532 1.21835 0.95182 0.81804 1.00749 1.21305 0.93900 0.88800 0.93122 0.94306 0.93381 0.88570 0.95349 0.94139 0.90013 0.90532 0.90097 0.91017 0.89677 0.82477 0.82862 0.90667 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 11.05 55.49 0.61 -24.89 16 2 C 0.01 0.26 5.09 -17.43 -0.09 0.17 16 3 Si 0.91 21.28 29.57 -169.99 -5.03 16.25 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.84 8.83 -15.06 -0.13 -6.97 16 8 H 0.07 1.78 6.32 -52.48 -0.33 1.45 16 9 N -0.59 -14.29 3.03 -164.46 -0.50 -14.78 16 10 C 0.14 3.36 5.38 -3.54 -0.02 3.34 16 11 C 0.04 0.74 6.96 37.26 0.26 1.00 16 12 O -0.39 -7.46 10.49 -35.23 -0.37 -7.83 16 13 C 0.08 1.34 2.47 -26.63 -0.07 1.28 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.12 -1.61 5.82 -26.65 -0.16 -1.77 16 16 C 0.10 1.09 5.20 -3.66 -0.02 1.07 16 17 N -0.61 -9.22 2.98 -174.27 -0.52 -9.74 16 18 C 0.59 9.36 7.60 -12.91 -0.10 9.26 16 19 O -0.51 -10.28 16.40 5.18 0.08 -10.20 16 20 C -0.02 -0.25 6.24 -81.93 -0.51 -0.76 16 21 C -0.11 -1.23 10.75 -39.13 -0.42 -1.65 16 22 C -0.17 -1.65 10.78 -39.94 -0.43 -2.08 16 23 C 0.08 0.71 7.74 -16.82 -0.13 0.58 16 24 Cl -0.02 -0.15 29.30 -51.86 -1.52 -1.67 16 25 N -0.53 -5.15 4.71 -6.54 -0.03 -5.18 16 26 H 0.42 3.24 6.79 -40.82 -0.28 2.97 16 27 C 0.13 2.36 4.53 -3.71 -0.02 2.34 16 28 C 0.14 2.83 3.02 -67.53 -0.20 2.63 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.10 2.46 6.26 -51.93 -0.33 2.13 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 0.79 4.59 -51.93 -0.24 0.55 16 39 H 0.16 1.72 8.06 -52.48 -0.42 1.29 16 40 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 41 H 0.08 1.39 7.36 -51.93 -0.38 1.01 16 42 H 0.11 2.33 6.81 -51.93 -0.35 1.98 16 LS Contribution 346.95 15.07 5.23 5.23 Total: -1.00 -31.11 346.95 -9.34 -40.45 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -5.27 Total: 3.92 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -2.03 Total: 8.44 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.44 Total: -54.60 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.28 Total: -18.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.11 -9.34 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.122 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds