Wall clock time and date at job start Tue Mar 31 2020 22:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00128 * 2 1 4 4 H 1.48500 * 109.47419 * 270.00176 * 3 2 1 5 5 H 1.48502 * 109.46750 * 30.00338 * 3 2 1 6 6 H 1.48500 * 109.47060 * 149.99659 * 3 2 1 7 7 C 1.38815 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99799 * 190.27883 * 7 2 1 9 9 N 1.36933 * 120.00074 * 10.26844 * 7 2 1 10 10 C 1.47227 * 121.32942 * 30.15292 * 9 7 2 11 11 C 1.53197 * 108.86827 * 129.70951 * 10 9 7 12 12 O 1.43153 * 109.69482 * 51.22570 * 11 10 9 13 13 C 1.42599 * 113.63311 * 298.34419 * 12 11 10 14 14 H 1.09007 * 109.34294 * 303.92490 * 13 12 11 15 15 C 1.52787 * 111.11203 * 183.61346 * 13 12 11 16 16 C 1.53366 * 108.81792 * 177.46847 * 15 13 12 17 17 N 1.46845 * 109.24817 * 53.83366 * 16 15 13 18 18 C 1.34777 * 120.40900 * 127.72907 * 17 16 15 19 19 O 1.21710 * 119.99636 * 188.04418 * 18 17 16 20 20 C 1.46553 * 120.00126 * 8.04225 * 18 17 16 21 21 C 1.37926 * 126.23005 * 206.60621 * 20 18 17 22 22 C 1.39752 * 107.12118 * 179.87908 * 21 20 18 23 23 C 1.35661 * 107.88196 * 0.38071 * 22 21 20 24 24 Cl 1.73602 * 125.57063 * 179.75877 * 23 22 21 25 25 N 1.35573 * 108.85345 * 359.76270 * 23 22 21 26 26 H 0.97000 * 125.70030 * 180.02562 * 25 23 22 27 27 C 1.47127 * 119.17761 * 307.75052 * 17 16 15 28 28 C 1.46873 * 121.30854 * 210.12858 * 9 7 2 29 29 H 1.09000 * 109.65689 * 112.37549 * 28 9 7 30 30 H 0.96997 * 120.00026 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.51290 * 9.91959 * 10 9 7 32 32 H 1.09000 * 109.59103 * 249.54510 * 10 9 7 33 33 H 1.08992 * 109.42691 * 291.17301 * 11 10 9 34 34 H 1.09001 * 109.42616 * 171.27731 * 11 10 9 35 35 H 1.09003 * 109.57900 * 297.26712 * 15 13 12 36 36 H 1.08998 * 109.57787 * 57.66867 * 15 13 12 37 37 H 1.09006 * 109.50889 * 293.90701 * 16 15 13 38 38 H 1.08998 * 109.51338 * 173.76901 * 16 15 13 39 39 H 1.08003 * 126.44087 * 0.02562 * 21 20 18 40 40 H 1.07995 * 126.06007 * 180.14438 * 22 21 20 41 41 H 1.09004 * 109.72594 * 293.56150 * 27 17 16 42 42 H 1.09004 * 109.76395 * 172.91885 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6525 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0773 -1.2097 0.1664 9 7 1.3420 -2.3785 -0.2125 10 6 0.1318 -2.4314 -1.0492 11 6 0.2890 -3.5563 -2.0771 12 8 0.6647 -4.7676 -1.4131 13 6 1.9147 -4.6822 -0.7323 14 1 2.6892 -4.3774 -1.4362 15 6 2.3013 -6.0279 -0.1208 16 6 3.6781 -5.8932 0.5413 17 7 3.6532 -4.7692 1.4859 18 6 4.0554 -4.9404 2.7608 19 8 3.8958 -4.0492 3.5741 20 6 4.6849 -6.1998 3.1677 21 6 4.6838 -6.7388 4.4373 22 6 5.3931 -7.9413 4.3744 23 6 5.8147 -8.1098 3.0960 24 17 6.7451 -9.4524 2.5082 25 7 5.3908 -7.0582 2.3526 26 1 5.5563 -6.9314 1.4053 27 6 3.1831 -3.4540 1.0235 28 6 1.8047 -3.6376 0.3857 29 1 1.0861 -3.9744 1.1328 30 1 -0.4850 0.8400 0.0004 31 1 0.0043 -1.4800 -1.5655 32 1 -0.7377 -2.6284 -0.4221 33 1 1.0600 -3.2838 -2.7977 34 1 -0.6569 -3.7066 -2.5976 35 1 1.5626 -6.3148 0.6277 36 1 2.3448 -6.7856 -0.9031 37 1 4.4332 -5.7095 -0.2231 38 1 3.9166 -6.8127 1.0758 39 1 4.2198 -6.3129 5.3146 40 1 5.5767 -8.6149 5.1983 41 1 3.8790 -3.0528 0.2866 42 1 3.1090 -2.7707 1.8695 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074336236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:21 Heat of formation + Delta-G solvation = -13.162141 kcal Electronic energy + Delta-G solvation = -28103.700908 eV Core-core repulsion = 24111.096439 eV Total energy + Delta-G solvation = -3992.604469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69109 -41.15548 -39.86331 -37.72582 -37.59838 -36.57044 -33.69659 -33.11764 -32.41677 -31.53829 -30.27691 -28.82512 -26.87837 -25.65296 -24.20414 -23.42616 -22.29579 -21.90886 -21.44679 -21.17198 -19.09043 -18.69322 -17.96824 -17.21268 -17.02549 -16.80062 -16.68605 -16.22114 -15.76596 -15.58046 -15.42848 -15.14269 -14.97100 -14.72977 -14.70043 -14.07684 -14.04501 -13.94874 -13.78568 -13.37140 -13.01162 -12.87081 -12.81193 -12.68745 -12.48856 -12.36160 -12.26344 -12.08063 -11.97319 -11.82812 -11.31678 -11.27583 -10.75148 -10.57289 -10.20044 -9.90263 -9.24616 -8.73054 -7.92970 -5.46278 0.22273 0.53926 1.43644 1.44940 1.45648 1.53723 1.65772 1.98757 2.29654 2.44715 2.79390 3.23352 3.36454 3.38574 3.75094 3.79545 3.95838 4.09696 4.14496 4.15146 4.20754 4.31182 4.34720 4.48498 4.50981 4.52555 4.71590 4.78159 4.81077 4.94125 5.00568 5.07401 5.08594 5.19324 5.31673 5.41779 5.54091 5.58801 5.65023 6.05648 6.21276 6.24026 6.32293 6.90267 7.03377 7.69232 8.25806 9.12899 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.003225 C = 0.002866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.077323 B = 8678.806247 C = 9768.147533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.147 3.853 11 C 0.052 3.948 12 O -0.392 6.392 13 C 0.081 3.919 14 H 0.062 0.938 15 C -0.114 4.114 16 C 0.096 3.904 17 N -0.607 5.607 18 C 0.585 3.415 19 O -0.569 6.569 20 C -0.042 4.042 21 C -0.109 4.109 22 C -0.175 4.175 23 C 0.091 3.909 24 Cl 0.004 6.996 25 N -0.522 5.522 26 H 0.433 0.567 27 C 0.141 3.859 28 C 0.133 3.867 29 H 0.003 0.997 30 H 0.251 0.749 31 H 0.071 0.929 32 H -0.006 1.006 33 H 0.052 0.948 34 H 0.108 0.892 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.154 0.846 40 H 0.178 0.822 41 H 0.082 0.918 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.848 -21.005 -0.095 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.022 3.978 11 C -0.026 4.026 12 O -0.311 6.311 13 C 0.022 3.978 14 H 0.080 0.920 15 C -0.153 4.153 16 C -0.026 4.026 17 N -0.340 5.340 18 C 0.374 3.626 19 O -0.448 6.448 20 C -0.155 4.155 21 C -0.135 4.135 22 C -0.200 4.200 23 C -0.052 4.052 24 Cl 0.032 6.968 25 N -0.127 5.127 26 H 0.277 0.723 27 C 0.018 3.982 28 C 0.026 3.974 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.090 0.910 32 H 0.012 0.988 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.172 0.828 40 H 0.195 0.805 41 H 0.100 0.900 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.661 -20.606 0.085 24.185 hybrid contribution -0.126 1.772 -0.252 1.795 sum 12.535 -18.833 -0.167 22.624 Atomic orbital electron populations 1.70138 1.06709 1.25996 1.55284 1.25938 0.96180 1.01618 1.00443 0.85255 0.77964 0.79361 0.77815 1.20418 1.22339 1.19506 1.19450 0.91419 0.84265 1.44109 0.90601 1.44245 1.30290 1.03461 1.54987 1.21280 0.87264 0.97670 0.91631 1.23198 1.00712 0.84613 0.94065 1.87751 1.38870 1.35082 1.69436 1.22486 0.86220 0.95935 0.93180 0.91973 1.21836 0.96515 0.95871 1.01073 1.22349 0.98327 0.89068 0.92830 1.48226 1.63817 1.11642 1.10313 1.17470 0.77936 0.85629 0.81521 1.90859 1.58390 1.43626 1.51949 1.19952 1.08772 0.94293 0.92490 1.21492 1.01201 0.95679 0.95166 1.20931 1.04260 0.99461 0.95313 1.21205 1.03575 0.88516 0.91948 1.98424 1.70184 1.39370 1.88787 1.42440 1.41917 1.16476 1.11890 0.72288 1.21362 0.94420 0.83442 0.98992 1.21447 0.93785 0.88355 0.93833 0.97953 0.93951 0.91049 0.98772 0.92970 0.87377 0.91847 0.86394 0.87566 0.87081 0.82800 0.80497 0.90002 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.46 11.05 21.65 0.24 -55.22 16 2 C -0.05 -2.56 5.09 84.86 0.43 -2.13 16 3 Si 0.97 44.90 29.57 68.60 2.03 46.93 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.26 -14.19 8.83 84.03 0.74 -13.45 16 8 H 0.08 3.93 6.32 -2.91 -0.02 3.91 16 9 N -0.60 -30.49 3.03 -674.21 -2.04 -32.54 16 10 C 0.15 7.18 5.38 86.31 0.46 7.64 16 11 C 0.05 1.95 6.96 72.05 0.50 2.45 16 12 O -0.39 -14.46 10.49 -148.98 -1.56 -16.02 16 13 C 0.08 2.70 2.47 30.66 0.08 2.78 16 14 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 15 C -0.11 -2.68 5.82 30.65 0.18 -2.50 16 16 C 0.10 1.85 5.20 86.44 0.45 2.30 16 17 N -0.61 -18.06 2.98 -823.48 -2.45 -20.52 16 18 C 0.58 18.86 7.60 86.41 0.66 19.52 16 19 O -0.57 -23.99 16.40 -4.38 -0.07 -24.06 16 20 C -0.04 -1.00 6.24 40.30 0.25 -0.75 16 21 C -0.11 -2.37 10.75 22.56 0.24 -2.13 16 22 C -0.17 -2.82 10.78 22.04 0.24 -2.58 16 23 C 0.09 1.36 7.74 83.52 0.65 2.01 16 24 Cl 0.00 0.05 29.30 -2.72 -0.08 -0.03 16 25 N -0.52 -8.44 4.71 -174.62 -0.82 -9.27 16 26 H 0.43 4.89 6.79 -92.71 -0.63 4.26 16 27 C 0.14 5.43 4.53 86.26 0.39 5.82 16 28 C 0.13 5.67 3.02 45.05 0.14 5.81 16 29 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.07 3.82 6.26 -2.39 -0.01 3.80 16 32 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 1.63 4.59 -2.39 -0.01 1.61 16 39 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 41 H 0.08 3.03 7.36 -2.39 -0.02 3.01 16 42 H 0.06 3.05 6.81 -2.38 -0.02 3.04 16 Total: -1.00 -72.73 346.95 1.08 -71.66 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.44 Total: 14.28 kcal Atomic # 6 Polarization: 19.38 SS G_CDS: 5.40 Total: 24.79 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.08 Total: -117.54 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.63 Total: -40.08 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -72.73 1.08 -71.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074336236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.494 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds