Wall clock time and date at job start Tue Mar 31 2020 22:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30208 * 126.78914 * 2 1 4 4 O 1.20923 * 111.64728 * 179.97438 * 3 2 1 5 5 C 1.34068 * 111.55126 * 0.02562 * 4 3 2 6 6 Cl 1.73595 * 126.79695 * 179.97438 * 5 4 3 7 7 C 1.35677 * 106.40565 * 359.97438 * 5 4 3 8 8 C 1.50699 * 128.01070 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47299 * 269.97180 * 8 7 5 10 10 O 1.21289 * 120.00056 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00260 * 179.97438 * 9 8 7 12 12 C 1.47354 * 125.52864 * 359.70383 * 11 9 8 13 13 C 1.55160 * 104.78245 * 156.45988 * 12 11 9 14 14 C 1.54809 * 101.39417 * 37.54002 * 13 12 11 15 15 H 1.08999 * 113.15457 * 85.43869 * 14 13 12 16 16 C 1.53263 * 109.74369 * 212.11416 * 14 13 12 17 17 N 1.46584 * 108.15844 * 95.76136 * 16 14 13 18 18 C 1.36932 * 125.30568 * 177.88545 * 17 16 14 19 19 H 1.08004 * 120.00137 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.00245 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99436 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00245 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47171 * 60.00195 * 22 20 18 24 24 H 1.48499 * 109.46923 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47075 * 299.99673 * 22 20 18 26 26 C 1.46610 * 109.38844 * 357.88789 * 17 16 14 27 27 C 1.47212 * 125.53497 * 180.02562 * 11 9 8 28 28 H 1.09001 * 112.28247 * 56.22658 * 27 11 9 29 29 H 1.09008 * 109.47187 * 90.02629 * 1 2 3 30 30 H 1.09004 * 109.47330 * 210.02406 * 1 2 3 31 31 H 1.08995 * 109.47643 * 330.02627 * 1 2 3 32 32 H 1.08997 * 109.47023 * 29.97973 * 8 7 5 33 33 H 1.09003 * 109.46504 * 149.97508 * 8 7 5 34 34 H 1.08999 * 110.35281 * 275.41387 * 12 11 9 35 35 H 1.09002 * 110.35732 * 37.69887 * 12 11 9 36 36 H 1.08995 * 111.22377 * 279.45379 * 13 12 11 37 37 H 1.09001 * 110.94802 * 155.49958 * 13 12 11 38 38 H 1.09001 * 109.73736 * 215.44414 * 16 14 13 39 39 H 1.09002 * 109.74200 * 336.07290 * 16 14 13 40 40 H 0.96997 * 119.99442 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.91435 * 258.45426 * 26 17 16 42 42 H 1.08995 * 109.91617 * 137.17088 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6036 -0.6054 0.0004 6 17 5.1011 -1.4835 0.0003 7 6 2.3530 -1.1315 0.0003 8 6 1.9580 -2.5858 0.0006 9 6 1.8259 -3.0708 -1.4200 10 8 2.0327 -2.3105 -2.3421 11 7 1.4791 -4.3497 -1.6660 12 6 1.2078 -5.3752 -0.6432 13 6 0.3023 -6.4147 -1.3553 14 6 0.9177 -6.4344 -2.7757 15 1 1.7624 -7.1171 -2.8674 16 6 -0.1780 -6.7112 -3.8109 17 7 -0.6410 -5.4254 -4.3410 18 6 -1.5870 -5.2667 -5.3182 19 1 -2.0553 -6.1328 -5.7622 20 6 -1.9433 -3.9928 -5.7391 21 7 -1.3715 -2.9374 -5.1991 22 14 -3.2343 -3.7763 -7.0717 23 1 -4.5157 -4.3770 -6.6218 24 1 -3.4331 -2.3289 -7.3378 25 1 -2.7807 -4.4508 -8.3145 26 6 0.0666 -4.3357 -3.6618 27 6 1.3162 -4.9506 -3.0000 28 1 2.2126 -4.8484 -3.6116 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 2.7217 -3.1696 0.5144 33 1 1.0040 -2.7029 0.5147 34 1 2.1380 -5.8399 -0.3163 35 1 0.6841 -4.9352 0.2054 36 1 -0.7349 -6.0810 -1.3832 37 1 0.3836 -7.3925 -0.8805 38 1 0.2257 -7.3192 -4.6206 39 1 -1.0085 -7.2346 -3.3371 40 1 -1.6207 -2.0472 -5.4929 41 1 -0.5764 -3.8927 -2.9013 42 1 0.3651 -3.5783 -4.3864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076355781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:24 Heat of formation + Delta-G solvation = 64.426485 kcal Electronic energy + Delta-G solvation = -28001.703924 eV Core-core repulsion = 24012.463950 eV Total energy + Delta-G solvation = -3989.239973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -45.09974 -40.12877 -38.03857 -37.32534 -35.32866 -34.95260 -32.58588 -32.18382 -30.68009 -29.49963 -28.77646 -28.12300 -26.57671 -24.52216 -23.01661 -22.03555 -21.53913 -20.45230 -19.66050 -18.70115 -17.93068 -17.74524 -17.04334 -16.61184 -15.98561 -15.29339 -15.19653 -14.65464 -14.35652 -13.82142 -13.63936 -13.38466 -13.36777 -13.11353 -12.87097 -12.74622 -12.64664 -12.51715 -12.21341 -12.15941 -12.01446 -11.84493 -11.57219 -11.23785 -11.05568 -10.98945 -10.77920 -10.47584 -10.20669 -10.06512 -10.04579 -9.77849 -9.70690 -9.57961 -9.20419 -8.59219 -8.21739 -6.81978 -5.62527 -3.04761 0.92525 1.15984 1.99961 2.95215 3.25865 3.41785 3.45884 3.48219 3.54187 3.96515 4.44467 4.50179 4.59427 4.70066 4.76500 4.82942 5.06539 5.18173 5.25318 5.41560 5.45238 5.47067 5.51788 5.57228 5.60687 5.64292 5.68039 5.78583 5.90885 6.00559 6.06577 6.19894 6.31550 6.51301 6.58877 6.65405 6.86734 7.52757 7.64279 7.87379 7.97276 8.01076 8.37834 8.53408 9.24781 9.85729 10.47655 11.41600 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012889 B = 0.003701 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2171.927099 B = 7563.031407 C = 8869.861894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.050 3.950 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.011 3.989 6 Cl 0.044 6.956 7 C -0.146 4.146 8 C -0.062 4.062 9 C 0.526 3.474 10 O -0.516 6.516 11 N -0.608 5.608 12 C 0.100 3.900 13 C -0.121 4.121 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.145 3.855 17 N -0.602 5.602 18 C -0.233 4.233 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.168 3.832 27 C 0.115 3.885 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.023 0.977 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.019 0.981 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.282 -2.254 16.815 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 N -0.056 5.056 4 O 0.042 5.958 5 C -0.079 4.079 6 Cl 0.073 6.927 7 C -0.151 4.151 8 C -0.103 4.103 9 C 0.313 3.687 10 O -0.391 6.391 11 N -0.343 5.343 12 C -0.024 4.024 13 C -0.159 4.159 14 C -0.130 4.130 15 H 0.105 0.895 16 C 0.018 3.982 17 N -0.328 5.328 18 C -0.362 4.362 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.042 3.958 27 C 0.012 3.988 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 9.237 -0.319 16.212 18.661 hybrid contribution -0.470 -0.820 -0.657 1.151 sum 8.767 -1.139 15.555 17.892 Atomic orbital electron populations 1.20264 0.85072 1.03660 1.04700 1.23258 0.99167 0.87606 1.00813 1.73904 0.88420 1.22811 1.20500 1.84891 1.22229 1.20442 1.68230 1.24409 0.90595 0.85042 1.07868 1.98439 1.28436 1.69131 1.96735 1.20111 0.90073 0.96880 1.08009 1.19959 1.04488 0.89430 0.96396 1.19800 0.77675 0.80792 0.90417 1.90791 1.48963 1.53489 1.45840 1.48511 1.68591 1.09064 1.08140 1.22377 0.98789 0.89618 0.91581 1.22823 0.99908 0.98228 0.94965 1.22871 0.98510 0.96058 0.95511 0.89473 1.20988 0.93413 0.90367 0.93393 1.44159 1.45850 0.99530 1.43305 1.18977 1.13212 0.92484 1.11482 0.90445 1.24838 1.00042 0.95441 0.99932 1.69918 1.44460 0.97398 1.44341 0.86203 0.81149 0.76810 0.81594 1.21206 1.21583 1.21099 1.21644 0.87460 0.91037 0.95671 1.22977 1.00789 0.91861 0.83204 0.90054 0.88906 0.89845 0.90249 0.87630 0.87160 0.91633 0.91059 0.89855 0.90377 0.95929 0.95703 0.93605 0.96287 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.39 36.00 0.37 -0.58 16 2 C 0.05 0.72 7.32 -82.13 -0.60 0.12 16 3 N -0.35 -5.38 12.07 33.43 0.40 -4.97 16 4 O 0.11 1.57 11.20 17.10 0.19 1.76 16 5 C 0.01 0.15 8.12 29.82 0.24 0.39 16 6 Cl 0.04 0.49 29.23 -51.86 -1.52 -1.03 16 7 C -0.15 -2.00 4.82 -104.38 -0.50 -2.50 16 8 C -0.06 -0.74 5.10 -29.04 -0.15 -0.89 16 9 C 0.53 8.84 7.66 -10.99 -0.08 8.76 16 10 O -0.52 -11.27 16.15 5.55 0.09 -11.18 16 11 N -0.61 -9.71 2.85 -161.51 -0.46 -10.17 16 12 C 0.10 1.13 6.68 -2.43 -0.02 1.11 16 13 C -0.12 -1.54 6.25 -24.63 -0.15 -1.69 16 14 C -0.11 -1.74 3.90 -88.33 -0.34 -2.08 16 15 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 16 C 0.14 2.86 6.65 -3.86 -0.03 2.84 16 17 N -0.60 -15.28 3.37 -172.18 -0.58 -15.86 16 18 C -0.23 -6.51 10.25 -15.06 -0.15 -6.66 16 19 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 20 C -0.01 -0.17 5.48 -17.42 -0.10 -0.26 16 21 N -0.91 -27.53 10.17 55.49 0.56 -26.96 16 22 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.17 4.15 4.80 -3.36 -0.02 4.14 16 27 C 0.12 2.20 3.88 -65.72 -0.25 1.95 16 28 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 29 H 0.09 1.28 8.14 -51.92 -0.42 0.86 16 30 H 0.08 0.82 7.66 -51.93 -0.40 0.42 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.11 1.05 7.36 -51.93 -0.38 0.67 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.65 7.49 -51.93 -0.39 0.26 16 36 H 0.08 1.25 7.88 -51.93 -0.41 0.84 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.48 7.74 -51.93 -0.40 0.08 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 42 H 0.10 2.81 6.22 -51.93 -0.32 2.49 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -34.48 360.77 -8.32 -42.80 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.64 Total: -1.73 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.78 Total: 4.62 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.07 Total: -57.97 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.28 Total: -9.42 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 17 Polarization: 0.49 SS G_CDS: -1.52 Total: -1.03 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.48 -8.32 -42.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076355781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.222 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds