Wall clock time and date at job start Tue Mar 31 2020 22:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38652 * 120.79102 * 2 1 4 4 C 1.38192 * 119.17633 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.60145 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47064 * 124.99889 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64024 * 34.29331 * 9 8 6 11 11 C 1.54327 * 110.71639 * 271.15408 * 9 8 6 12 12 N 1.47029 * 107.26712 * 219.44116 * 11 9 8 13 13 C 1.36937 * 125.64155 * 178.97853 * 12 11 9 14 14 H 1.07994 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99443 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00374 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99964 * 180.02562 * 15 13 12 18 18 H 1.48488 * 109.47385 * 89.99504 * 17 15 13 19 19 H 1.48504 * 109.46737 * 210.00013 * 17 15 13 20 20 H 1.48500 * 109.46704 * 329.99458 * 17 15 13 21 21 C 1.47423 * 108.70516 * 358.94522 * 12 11 9 22 22 C 1.55121 * 104.94129 * 23.99719 * 21 12 11 23 23 H 1.09007 * 110.93255 * 81.22414 * 22 21 12 24 24 O 1.42906 * 111.16162 * 205.13036 * 22 21 12 25 25 N 1.31882 * 120.79418 * 0.26865 * 4 3 2 26 26 C 1.31841 * 121.73661 * 359.44049 * 25 4 3 27 27 C 1.38350 * 120.74550 * 0.56111 * 26 25 4 28 28 Cl 1.73604 * 120.43262 * 179.74784 * 27 26 25 29 29 H 1.08997 * 109.47044 * 90.00313 * 1 2 3 30 30 H 1.08999 * 109.46840 * 210.00127 * 1 2 3 31 31 H 1.08999 * 109.47183 * 330.00319 * 1 2 3 32 32 H 1.08003 * 120.41414 * 0.03904 * 3 2 1 33 33 H 1.09002 * 109.47060 * 244.99852 * 5 4 3 34 34 H 1.09001 * 109.47380 * 4.99940 * 5 4 3 35 35 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.88605 * 338.85667 * 11 9 8 37 37 H 1.09003 * 109.87793 * 100.02858 * 11 9 8 38 38 H 0.97002 * 120.00182 * 180.02562 * 16 15 13 39 39 H 1.08993 * 110.36800 * 142.96801 * 21 12 11 40 40 H 1.09008 * 110.35998 * 265.18122 * 21 12 11 41 41 H 0.96702 * 113.99924 * 292.17458 * 24 22 21 42 42 H 1.08006 * 119.62716 * 180.28789 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1911 0.0000 4 6 3.5982 1.1521 -0.0005 5 6 4.3792 2.4410 -0.0011 6 6 5.3370 2.4485 1.1624 7 8 5.3806 1.5008 1.9180 8 7 6.1442 3.5087 1.3639 9 6 7.0757 3.5158 2.4946 10 1 7.4489 2.5108 2.6912 11 6 6.4026 4.1041 3.7526 12 7 7.4050 4.9350 4.4357 13 6 7.1992 5.6504 5.5851 14 1 6.2328 5.6323 6.0668 15 6 8.2329 6.3990 6.1310 16 7 9.4109 6.4208 5.5443 17 14 7.9525 7.3744 7.6993 18 1 8.2780 6.5269 8.8743 19 1 8.8259 8.5754 7.6980 20 1 6.5306 7.7965 7.7720 21 6 8.6684 4.8696 3.6788 22 6 8.2495 4.4959 2.2328 23 1 7.9096 5.3756 1.6862 24 8 9.3156 3.8447 1.5388 25 7 4.2411 0.0007 -0.0064 26 6 3.6003 -1.1515 -0.0009 27 6 2.2174 -1.1917 -0.0004 28 17 1.3819 -2.7134 0.0002 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6966 2.1376 0.0006 33 1 4.9386 2.5264 -0.9328 34 1 3.6920 3.2823 0.0885 35 1 6.1090 4.2668 0.7598 36 1 5.5482 4.7162 3.4641 37 1 6.0785 3.2980 4.4109 38 1 10.1333 6.9436 5.9260 39 1 9.1689 5.8378 3.6917 40 1 9.3202 4.1009 4.0943 41 1 10.0719 4.4178 1.3528 42 1 4.1613 -2.0744 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077221272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:48 Heat of formation + Delta-G solvation = -27.752127 kcal Electronic energy + Delta-G solvation = -26421.522293 eV Core-core repulsion = 22428.285155 eV Total energy + Delta-G solvation = -3993.237138 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80778 -39.46277 -37.76660 -36.93479 -35.07697 -34.28848 -33.96813 -32.97765 -31.68914 -29.03123 -28.23812 -27.93532 -26.73335 -24.43740 -23.57654 -22.08970 -20.73244 -20.26772 -19.87300 -17.54571 -17.11869 -17.02443 -16.91052 -16.48604 -16.02543 -15.44218 -15.04049 -14.74828 -14.71651 -14.02477 -13.96099 -13.61296 -13.37922 -13.24805 -13.03740 -13.00990 -12.85079 -12.59417 -12.23851 -12.03125 -12.00747 -11.78027 -11.49625 -11.47538 -11.26049 -10.99386 -10.84796 -10.19882 -9.93721 -9.86393 -9.77931 -9.71749 -9.62815 -9.28123 -9.03832 -8.73384 -8.72662 -6.93120 -5.73379 -3.15855 0.63484 0.89348 1.74102 2.85265 3.17030 3.36863 3.41896 3.43425 3.55427 3.97611 4.21627 4.26971 4.39543 4.60870 4.61991 4.77999 4.97854 4.99332 5.11323 5.15416 5.26046 5.30011 5.32421 5.40911 5.52663 5.63269 5.66236 5.68730 5.77959 5.86571 6.10018 6.20139 6.23136 6.49869 6.67092 6.94195 7.31501 7.51527 7.67198 7.70593 7.76164 8.10292 8.24677 8.46544 9.12763 9.73244 10.35820 11.30809 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002195 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.727662 B =12755.462891 C =13469.931454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 C -0.157 4.157 4 C 0.155 3.845 5 C -0.094 4.094 6 C 0.518 3.482 7 O -0.522 6.522 8 N -0.717 5.717 9 C 0.144 3.856 10 H 0.100 0.900 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.222 4.222 14 H 0.080 0.920 15 C -0.011 4.011 16 N -0.924 5.924 17 Si 0.918 3.082 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.129 3.871 22 C 0.067 3.933 23 H 0.061 0.939 24 O -0.565 6.565 25 N -0.443 5.443 26 C 0.126 3.874 27 C -0.098 4.098 28 Cl -0.058 7.058 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.397 0.603 36 H 0.030 0.970 37 H 0.032 0.968 38 H 0.253 0.747 39 H 0.113 0.887 40 H 0.025 0.975 41 H 0.377 0.623 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.998 -9.359 -17.351 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.042 4.042 3 C -0.177 4.177 4 C 0.017 3.983 5 C -0.135 4.135 6 C 0.302 3.698 7 O -0.396 6.396 8 N -0.368 5.368 9 C 0.039 3.961 10 H 0.118 0.882 11 C 0.003 3.997 12 N -0.328 5.328 13 C -0.350 4.350 14 H 0.098 0.902 15 C -0.207 4.207 16 N -0.573 5.573 17 Si 0.748 3.252 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.004 3.996 22 C 0.007 3.993 23 H 0.079 0.921 24 O -0.370 6.370 25 N -0.152 5.152 26 C -0.033 4.033 27 C -0.127 4.127 28 Cl -0.030 7.030 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.231 0.769 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.043 0.957 41 H 0.224 0.776 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.430 -10.554 -16.613 24.405 hybrid contribution -0.694 1.141 0.577 1.454 sum -15.123 -9.414 -16.036 23.968 Atomic orbital electron populations 1.20890 0.89325 1.04094 1.03341 1.20167 0.97356 0.91206 0.95443 1.21833 0.94199 0.98517 1.03198 1.20680 0.90566 0.93269 0.93748 1.20648 0.98334 0.94630 0.99860 1.20097 0.81137 0.82620 0.85914 1.90750 1.67904 1.34320 1.46663 1.45936 1.40006 1.20181 1.30682 1.21980 0.87660 1.00879 0.85610 0.88221 1.21625 0.92800 0.93749 0.91485 1.44294 1.07423 1.53830 1.27259 1.19102 0.97161 1.20024 0.98734 0.90223 1.24806 0.95602 1.00706 0.99540 1.69737 1.02127 1.45156 1.40278 0.86021 0.77254 0.79265 0.82656 1.21514 1.21593 1.20638 1.22581 0.89000 1.03246 0.84813 1.23659 0.87022 0.92929 0.95733 0.92075 1.86428 1.29900 1.41903 1.78723 1.67627 1.39646 0.97372 1.10516 1.22780 0.89223 0.97036 0.94251 1.22026 0.94110 0.87618 1.08974 1.98361 1.78214 1.29504 1.96904 0.90043 0.90386 0.90428 0.83829 0.86725 0.87061 0.76877 0.95241 0.94974 0.93587 0.86978 0.95710 0.77632 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.69 36.01 0.35 -0.42 16 2 C -0.03 -0.31 5.92 -104.28 -0.62 -0.93 16 3 C -0.16 -1.48 9.42 -39.45 -0.37 -1.85 16 4 C 0.16 1.83 5.75 -82.59 -0.48 1.35 16 5 C -0.09 -0.94 6.10 -29.03 -0.18 -1.12 16 6 C 0.52 7.78 7.76 -10.98 -0.09 7.69 16 7 O -0.52 -10.29 15.03 5.56 0.08 -10.20 16 8 N -0.72 -10.49 5.12 -52.04 -0.27 -10.76 16 9 C 0.14 2.72 3.00 -66.10 -0.20 2.52 16 10 H 0.10 2.15 7.62 -51.93 -0.40 1.76 16 11 C 0.13 2.84 7.00 -3.06 -0.02 2.82 16 12 N -0.60 -15.33 3.40 -169.93 -0.58 -15.91 16 13 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 14 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 15 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 16 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 17 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.13 3.08 5.63 -2.42 -0.01 3.06 16 22 C 0.07 1.25 4.06 -24.47 -0.10 1.15 16 23 H 0.06 1.03 8.01 -51.93 -0.42 0.62 16 24 O -0.56 -9.69 13.48 -35.23 -0.47 -10.16 16 25 N -0.44 -6.12 9.24 -9.44 -0.09 -6.20 16 26 C 0.13 1.48 10.99 -17.51 -0.19 1.29 16 27 C -0.10 -1.01 6.34 -39.36 -0.25 -1.26 16 28 Cl -0.06 -0.52 27.48 -51.86 -1.42 -1.94 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.51 7.03 -51.93 -0.36 0.15 16 31 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.14 0.91 7.95 -52.48 -0.42 0.50 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.73 7.87 -51.93 -0.41 0.32 16 35 H 0.40 4.48 8.54 -40.82 -0.35 4.13 16 36 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 40 H 0.02 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.38 4.88 9.12 45.56 0.42 5.29 16 42 H 0.16 1.61 8.06 -52.48 -0.42 1.19 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -35.14 367.02 -8.82 -43.96 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -4.74 Total: 7.09 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -2.40 Total: 7.59 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.37 Total: -58.63 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.39 Total: -20.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.42 Total: -1.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.14 -8.82 -43.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077221272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.207 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds