Wall clock time and date at job start Tue Mar 31 2020 22:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38652 * 120.79102 * 2 1 4 4 C 1.38192 * 119.17633 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.60145 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47064 * 124.99889 * 5 4 3 7 7 O 1.21278 * 119.99985 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00271 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.64024 * 34.29331 * 9 8 6 11 11 C 1.54327 * 110.71639 * 271.15408 * 9 8 6 12 12 N 1.47029 * 107.26712 * 219.44116 * 11 9 8 13 13 C 1.36937 * 125.64155 * 178.97853 * 12 11 9 14 14 H 1.07994 * 120.00687 * 0.02562 * 13 12 11 15 15 C 1.38813 * 119.99443 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00374 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99964 * 180.02562 * 15 13 12 18 18 H 1.48488 * 109.47385 * 89.99504 * 17 15 13 19 19 H 1.48504 * 109.46737 * 210.00013 * 17 15 13 20 20 H 1.48500 * 109.46704 * 329.99458 * 17 15 13 21 21 C 1.47423 * 108.70516 * 358.94522 * 12 11 9 22 22 C 1.55121 * 104.94129 * 23.99719 * 21 12 11 23 23 H 1.09007 * 110.93255 * 81.22414 * 22 21 12 24 24 O 1.42906 * 111.16162 * 205.13036 * 22 21 12 25 25 N 1.31882 * 120.79418 * 0.26865 * 4 3 2 26 26 C 1.31841 * 121.73661 * 359.44049 * 25 4 3 27 27 C 1.38350 * 120.74550 * 0.56111 * 26 25 4 28 28 Cl 1.73604 * 120.43262 * 179.74784 * 27 26 25 29 29 H 1.08997 * 109.47044 * 90.00313 * 1 2 3 30 30 H 1.08999 * 109.46840 * 210.00127 * 1 2 3 31 31 H 1.08999 * 109.47183 * 330.00319 * 1 2 3 32 32 H 1.08003 * 120.41414 * 0.03904 * 3 2 1 33 33 H 1.09002 * 109.47060 * 244.99852 * 5 4 3 34 34 H 1.09001 * 109.47380 * 4.99940 * 5 4 3 35 35 H 0.97005 * 119.99463 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.88605 * 338.85667 * 11 9 8 37 37 H 1.09003 * 109.87793 * 100.02858 * 11 9 8 38 38 H 0.97002 * 120.00182 * 180.02562 * 16 15 13 39 39 H 1.08993 * 110.36800 * 142.96801 * 21 12 11 40 40 H 1.09008 * 110.35998 * 265.18122 * 21 12 11 41 41 H 0.96702 * 113.99924 * 292.17458 * 24 22 21 42 42 H 1.08006 * 119.62716 * 180.28789 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1911 0.0000 4 6 3.5982 1.1521 -0.0005 5 6 4.3792 2.4410 -0.0011 6 6 5.3370 2.4485 1.1624 7 8 5.3806 1.5008 1.9180 8 7 6.1442 3.5087 1.3639 9 6 7.0757 3.5158 2.4946 10 1 7.4489 2.5108 2.6912 11 6 6.4026 4.1041 3.7526 12 7 7.4050 4.9350 4.4357 13 6 7.1992 5.6504 5.5851 14 1 6.2328 5.6323 6.0668 15 6 8.2329 6.3990 6.1310 16 7 9.4109 6.4208 5.5443 17 14 7.9525 7.3744 7.6993 18 1 8.2780 6.5269 8.8743 19 1 8.8259 8.5754 7.6980 20 1 6.5306 7.7965 7.7720 21 6 8.6684 4.8696 3.6788 22 6 8.2495 4.4959 2.2328 23 1 7.9096 5.3756 1.6862 24 8 9.3156 3.8447 1.5388 25 7 4.2411 0.0007 -0.0064 26 6 3.6003 -1.1515 -0.0009 27 6 2.2174 -1.1917 -0.0004 28 17 1.3819 -2.7134 0.0002 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6966 2.1376 0.0006 33 1 4.9386 2.5264 -0.9328 34 1 3.6920 3.2823 0.0885 35 1 6.1090 4.2668 0.7598 36 1 5.5482 4.7162 3.4641 37 1 6.0785 3.2980 4.4109 38 1 10.1333 6.9436 5.9260 39 1 9.1689 5.8378 3.6917 40 1 9.3202 4.1009 4.0943 41 1 10.0719 4.4178 1.3528 42 1 4.1613 -2.0744 -0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077221272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:47 Heat of formation + Delta-G solvation = -54.838014 kcal Electronic energy + Delta-G solvation = -26422.696825 eV Core-core repulsion = 22428.285155 eV Total energy + Delta-G solvation = -3994.411670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.65215 -40.72997 -39.27530 -37.68440 -36.68643 -35.52877 -34.94843 -33.94391 -33.43241 -30.48902 -29.37901 -28.83994 -28.25986 -26.28441 -24.34956 -23.11400 -22.41390 -21.69794 -21.16819 -19.11056 -18.54057 -18.20426 -17.71241 -17.60614 -17.32409 -16.81915 -16.23474 -16.07664 -15.78328 -15.43457 -15.32071 -14.82832 -14.57728 -14.51339 -14.09384 -13.95565 -13.73395 -13.68469 -13.60279 -13.24525 -13.18891 -13.09599 -12.83587 -12.73362 -12.67858 -12.58772 -12.18893 -12.05484 -11.92941 -11.42358 -11.17054 -10.83299 -10.75907 -10.51138 -10.41620 -10.12023 -9.82247 -8.97899 -7.82366 -5.28917 -0.13732 0.16464 1.00124 1.47040 1.49295 1.57803 1.71434 2.07665 2.46604 2.67602 3.09434 3.21467 3.29089 3.53822 3.59932 3.64290 3.78345 3.91386 3.99308 4.08257 4.18466 4.25061 4.39814 4.44282 4.48590 4.61105 4.62199 4.65531 4.73989 4.84232 4.88122 4.98620 5.11878 5.16362 5.37271 5.43609 5.50743 5.52973 5.67838 6.20841 6.61242 6.88088 6.92487 7.04367 7.34312 7.68573 8.30946 9.19349 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.002195 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.727662 B =12755.462891 C =13469.931454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.038 4.038 3 C -0.151 4.151 4 C 0.130 3.870 5 C -0.082 4.082 6 C 0.513 3.487 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.158 3.842 10 H 0.067 0.933 11 C 0.133 3.867 12 N -0.619 5.619 13 C -0.244 4.244 14 H 0.081 0.919 15 C -0.062 4.062 16 N -0.947 5.947 17 Si 0.984 3.016 18 H -0.291 1.291 19 H -0.288 1.288 20 H -0.267 1.267 21 C 0.132 3.868 22 C 0.092 3.908 23 H 0.093 0.907 24 O -0.569 6.569 25 N -0.483 5.483 26 C 0.104 3.896 27 C -0.105 4.105 28 Cl -0.050 7.050 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.180 0.820 33 H 0.140 0.860 34 H 0.156 0.844 35 H 0.418 0.582 36 H 0.046 0.954 37 H 0.008 0.992 38 H 0.251 0.749 39 H 0.092 0.908 40 H -0.014 1.014 41 H 0.397 0.603 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 -7.838 -18.994 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.170 4.170 4 C -0.007 4.007 5 C -0.122 4.122 6 C 0.301 3.699 7 O -0.453 6.453 8 N -0.356 5.356 9 C 0.051 3.949 10 H 0.085 0.915 11 C 0.006 3.994 12 N -0.347 5.347 13 C -0.372 4.372 14 H 0.099 0.901 15 C -0.255 4.255 16 N -0.596 5.596 17 Si 0.811 3.189 18 H -0.218 1.218 19 H -0.214 1.214 20 H -0.192 1.192 21 C 0.006 3.994 22 C 0.032 3.968 23 H 0.110 0.890 24 O -0.376 6.376 25 N -0.193 5.193 26 C -0.054 4.054 27 C -0.134 4.134 28 Cl -0.021 7.021 29 H 0.116 0.884 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.197 0.803 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.256 0.744 36 H 0.064 0.936 37 H 0.026 0.974 38 H 0.060 0.940 39 H 0.110 0.890 40 H 0.004 0.996 41 H 0.247 0.753 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.688 -9.018 -18.313 26.366 hybrid contribution 0.002 0.576 1.097 1.239 sum -16.687 -8.442 -17.216 25.418 Atomic orbital electron populations 1.20967 0.87152 1.04761 1.04536 1.20591 0.98926 0.90792 0.94348 1.22199 0.93369 1.00004 1.01476 1.21090 0.91917 0.93220 0.94496 1.20750 0.97925 0.95462 0.98052 1.21054 0.81021 0.81361 0.86500 1.90738 1.69417 1.36251 1.48924 1.45718 1.39043 1.21262 1.29577 1.21443 0.88492 0.98820 0.86143 0.91465 1.21675 0.92812 0.92768 0.92107 1.44559 1.08705 1.54061 1.27369 1.19446 0.97459 1.20418 0.99882 0.90093 1.25648 0.95444 1.01809 1.02613 1.69961 1.02650 1.45626 1.41391 0.85006 0.77730 0.77557 0.78573 1.21802 1.21414 1.19203 1.22415 0.88089 1.00874 0.87979 1.23289 0.87043 0.93662 0.92835 0.88976 1.86402 1.30562 1.42771 1.77913 1.67564 1.41220 0.98550 1.11935 1.22899 0.90197 0.96979 0.95313 1.22113 0.93841 0.88601 1.08809 1.98359 1.77840 1.29089 1.96856 0.88432 0.90739 0.88756 0.80259 0.84250 0.82657 0.74375 0.93569 0.97396 0.93972 0.89033 0.99583 0.75287 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.69 71.24 0.69 -0.49 16 2 C -0.04 -0.63 5.92 -19.65 -0.12 -0.75 16 3 C -0.15 -2.39 9.42 22.36 0.21 -2.18 16 4 C 0.13 2.83 5.75 42.54 0.24 3.07 16 5 C -0.08 -1.38 6.10 29.10 0.18 -1.20 16 6 C 0.51 14.66 7.76 87.66 0.68 15.34 16 7 O -0.58 -22.99 15.03 -3.02 -0.05 -23.03 16 8 N -0.70 -19.15 5.12 -436.93 -2.24 -21.38 16 9 C 0.16 5.93 3.00 46.18 0.14 6.07 16 10 H 0.07 3.00 7.62 -2.39 -0.02 2.98 16 11 C 0.13 5.84 7.00 86.73 0.61 6.44 16 12 N -0.62 -32.21 3.40 -691.55 -2.35 -34.56 16 13 C -0.24 -13.65 10.27 84.03 0.86 -12.78 16 14 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 15 C -0.06 -3.48 5.49 84.86 0.47 -3.02 16 16 N -0.95 -54.94 10.09 21.65 0.22 -54.72 16 17 Si 0.98 44.94 29.55 68.60 2.03 46.97 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 C 0.13 6.44 5.63 86.93 0.49 6.93 16 22 C 0.09 3.34 4.06 32.06 0.13 3.47 16 23 H 0.09 2.83 8.01 -2.38 -0.02 2.82 16 24 O -0.57 -18.80 13.48 -148.98 -2.01 -20.81 16 25 N -0.48 -13.34 9.24 -183.79 -1.70 -15.04 16 26 C 0.10 2.51 10.99 84.72 0.93 3.44 16 27 C -0.10 -2.09 6.34 22.42 0.14 -1.95 16 28 Cl -0.05 -0.86 27.48 -2.72 -0.07 -0.93 16 29 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.82 7.03 -2.39 -0.02 0.80 16 31 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.18 1.41 7.95 -2.91 -0.02 1.38 16 33 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.16 1.21 7.87 -2.39 -0.02 1.19 16 35 H 0.42 7.88 8.54 -92.70 -0.79 7.09 16 36 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 37 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 39 H 0.09 4.85 5.87 -2.39 -0.01 4.83 16 40 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 41 H 0.40 9.60 9.12 -74.06 -0.68 8.92 16 42 H 0.17 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -80.44 367.02 -0.90 -81.34 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.39 Total: 19.77 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 5.65 Total: 22.39 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.06 Total: -125.70 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -2.05 Total: -43.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.93 kcal Total: -80.44 -0.90 -81.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077221272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.505 kcal (2) G-P(sol) polarization free energy of solvation -80.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds