Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00048 * 2 1 4 4 H 1.08995 * 110.91603 * 26.09719 * 3 2 1 5 5 C 1.54911 * 111.00469 * 262.19343 * 3 2 1 6 6 N 1.47422 * 104.82991 * 204.91656 * 5 3 2 7 7 C 1.36941 * 125.64493 * 204.09002 * 6 5 3 8 8 H 1.08001 * 119.99634 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99989 * 0.04638 * 7 6 5 10 10 N 1.31617 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99872 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47137 * 90.00019 * 11 9 7 13 13 H 1.48500 * 109.47293 * 210.00167 * 11 9 7 14 14 H 1.48501 * 109.47129 * 329.99868 * 11 9 7 15 15 C 1.47019 * 108.70734 * 24.13033 * 6 5 3 16 16 C 1.54328 * 107.26943 * 358.94217 * 15 6 5 17 17 H 1.08994 * 110.72558 * 96.34409 * 16 15 6 18 18 N 1.46508 * 110.71760 * 219.44481 * 16 15 6 19 19 C 1.34770 * 119.99642 * 273.54294 * 18 16 15 20 20 O 1.21545 * 120.00341 * 359.97438 * 19 18 16 21 21 C 1.47841 * 119.99647 * 180.02562 * 19 18 16 22 22 C 1.39563 * 120.55687 * 353.93558 * 21 19 18 23 23 N 1.31662 * 120.59880 * 180.23171 * 22 21 19 24 24 C 1.31948 * 121.89221 * 359.48212 * 23 22 21 25 25 C 1.38431 * 121.06249 * 0.52543 * 24 23 22 26 26 Cl 1.73595 * 120.36376 * 179.76844 * 25 24 23 27 27 C 1.38510 * 119.27593 * 359.74255 * 25 24 23 28 28 C 1.50704 * 120.86270 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47759 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47331 * 300.00396 * 1 2 3 31 31 H 1.09003 * 109.47063 * 59.99742 * 1 2 3 32 32 H 1.08997 * 110.36560 * 86.08135 * 5 3 2 33 33 H 1.09004 * 110.36574 * 323.75962 * 5 3 2 34 34 H 0.96999 * 119.99666 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.88371 * 239.52390 * 15 6 5 36 36 H 1.09002 * 109.88530 * 118.35435 * 15 6 5 37 37 H 0.97002 * 119.99862 * 93.54347 * 18 16 15 38 38 H 1.08000 * 119.69962 * 359.96421 * 22 21 19 39 39 H 1.07999 * 119.46951 * 180.26694 * 24 23 22 40 40 H 1.09007 * 109.47102 * 263.70342 * 28 27 25 41 41 H 1.09004 * 109.47254 * 23.69453 * 28 27 25 42 42 H 1.08995 * 109.47479 * 143.69986 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4909 2.7228 -1.2412 7 6 3.8431 3.7010 -2.1325 8 1 4.6494 4.3802 -1.8980 9 6 3.1636 3.8198 -3.3370 10 7 2.1804 2.9926 -3.6224 11 14 3.6436 5.1546 -4.5525 12 1 4.6832 4.6330 -5.4756 13 1 2.4493 5.5657 -5.3335 14 1 4.1797 6.3265 -3.8145 15 6 4.1233 2.4854 0.0646 16 6 3.3824 1.3032 0.7243 17 1 3.9135 0.3680 0.5471 18 7 3.2108 1.5356 2.1606 19 6 4.1855 1.1821 3.0215 20 8 5.2067 0.6700 2.6065 21 6 4.0120 1.4161 4.4710 22 6 2.9024 2.1145 4.9491 23 7 2.7494 2.3273 6.2394 24 6 3.6211 1.8871 7.1267 25 6 4.7483 1.1862 6.7337 26 17 5.8865 0.6205 7.9161 27 6 4.9578 0.9406 5.3867 28 6 6.1730 0.1817 4.9191 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.5687 2.1873 -1.9469 33 1 2.7852 0.8748 -1.9943 34 1 1.7059 3.0754 -4.4643 35 1 4.0315 3.3747 0.6881 36 1 5.1748 2.2335 -0.0730 37 1 2.3956 1.9439 2.4918 38 1 2.1646 2.4875 4.2541 39 1 3.4547 2.0803 8.1762 40 1 6.9488 0.8866 4.6202 41 1 6.5444 -0.4448 5.7301 42 1 5.9048 -0.4455 4.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081818553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = -12.501946 kcal Electronic energy + Delta-G solvation = -27147.230475 eV Core-core repulsion = 23154.654634 eV Total energy + Delta-G solvation = -3992.575841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09869 -39.44644 -38.11696 -37.06398 -36.01526 -34.53334 -33.84887 -32.25403 -31.27327 -28.97040 -28.25388 -27.09935 -26.13503 -24.99587 -24.08358 -22.68763 -21.20846 -20.64003 -19.98134 -18.19959 -17.42924 -16.99079 -16.63163 -16.49848 -15.68167 -15.52023 -15.35326 -14.95578 -14.47629 -14.40275 -14.20473 -13.92033 -13.35274 -13.27148 -13.10270 -13.01024 -12.90141 -12.39016 -12.30509 -12.26178 -11.95459 -11.60840 -11.46849 -11.32760 -11.07507 -10.87276 -10.82159 -10.34188 -10.21814 -9.97831 -9.89737 -9.86830 -9.62313 -9.38760 -9.16443 -8.78712 -8.74121 -6.95011 -5.73931 -3.17121 0.19296 0.61946 1.58823 2.64415 3.03823 3.36629 3.41014 3.42209 3.43364 3.87520 4.04880 4.18101 4.25337 4.39528 4.48223 4.67515 4.89240 5.12138 5.18435 5.34512 5.36095 5.43639 5.53347 5.54516 5.61109 5.62101 5.73760 5.77336 5.87738 5.90640 6.00087 6.10513 6.18110 6.37921 6.61513 6.77989 7.19287 7.31968 7.44815 7.53110 7.67353 7.73706 8.14099 8.23092 9.11639 9.71930 10.33728 11.29943 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.002658 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.753593 B =10530.432176 C =11215.523289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.380 6.380 3 C 0.055 3.945 4 H 0.068 0.932 5 C 0.142 3.858 6 N -0.600 5.600 7 C -0.223 4.223 8 H 0.080 0.920 9 C -0.010 4.010 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.136 3.864 17 H 0.104 0.896 18 N -0.707 5.707 19 C 0.563 3.437 20 O -0.522 6.522 21 C -0.175 4.175 22 C 0.142 3.858 23 N -0.476 5.476 24 C 0.136 3.864 25 C -0.105 4.105 26 Cl -0.046 7.046 27 C 0.029 3.971 28 C -0.129 4.129 29 H 0.079 0.921 30 H 0.034 0.966 31 H 0.047 0.953 32 H 0.113 0.887 33 H 0.027 0.973 34 H 0.254 0.746 35 H 0.030 0.970 36 H 0.035 0.965 37 H 0.396 0.604 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.432 -4.945 20.978 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.298 6.298 3 C -0.005 4.005 4 H 0.086 0.914 5 C 0.016 3.984 6 N -0.328 5.328 7 C -0.351 4.351 8 H 0.098 0.902 9 C -0.205 4.205 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.032 3.968 17 H 0.122 0.878 18 N -0.357 5.357 19 C 0.349 3.651 20 O -0.399 6.399 21 C -0.181 4.181 22 C -0.016 4.016 23 N -0.185 5.185 24 C -0.021 4.021 25 C -0.134 4.134 26 Cl -0.018 7.018 27 C 0.020 3.980 28 C -0.185 4.185 29 H 0.098 0.902 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.045 0.955 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.231 0.769 38 H 0.184 0.816 39 H 0.186 0.814 40 H 0.108 0.892 41 H 0.089 0.911 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.278 -4.992 20.841 21.433 hybrid contribution 0.401 0.629 -0.583 0.947 sum 0.123 -4.363 20.258 20.723 Atomic orbital electron populations 1.22719 0.81518 1.02028 0.99967 1.87852 1.19271 1.27637 1.95082 1.24047 0.92452 0.83848 1.00145 0.91392 1.22305 0.94701 0.92069 0.89325 1.44302 1.37301 1.35486 1.15722 1.19090 1.13922 1.06147 0.95980 0.90178 1.24804 0.98472 0.99358 0.97879 1.69742 1.24527 1.38737 1.24115 0.86030 0.77347 0.80897 0.80969 1.21496 1.21608 1.20625 1.21603 0.95915 0.93909 0.88204 1.22255 0.97115 1.00386 0.77077 0.87759 1.45938 1.19726 1.62540 1.07537 1.17815 0.83812 0.78763 0.84751 1.90759 1.27620 1.42886 1.78629 1.20949 0.97600 1.04516 0.95005 1.23133 0.94377 0.91719 0.92382 1.67861 1.28508 1.19689 1.02411 1.22983 0.87676 0.90975 1.00429 1.21932 0.95706 1.05011 0.90764 1.98378 1.59637 1.87814 1.55927 1.20394 0.95494 0.91814 0.90266 1.21207 0.93630 1.00458 1.03177 0.90250 0.94771 0.93461 0.86901 0.95452 0.93555 0.95211 0.94689 0.76880 0.81631 0.81365 0.89223 0.91135 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.61 10.51 -35.23 -0.37 -6.98 16 3 C 0.05 0.99 3.15 -24.58 -0.08 0.91 16 4 H 0.07 1.13 7.69 -51.93 -0.40 0.73 16 5 C 0.14 3.33 5.62 -2.53 -0.01 3.32 16 6 N -0.60 -14.97 3.39 -170.07 -0.58 -15.55 16 7 C -0.22 -6.08 10.27 -15.06 -0.15 -6.23 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 10 N -0.92 -26.08 10.09 55.49 0.56 -25.52 16 11 Si 0.92 21.62 29.55 -169.99 -5.02 16.59 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.13 2.73 6.99 -3.06 -0.02 2.70 16 16 C 0.14 2.41 2.97 -66.09 -0.20 2.21 16 17 H 0.10 2.03 7.69 -51.93 -0.40 1.63 16 18 N -0.71 -9.83 5.08 -52.97 -0.27 -10.10 16 19 C 0.56 8.04 7.72 -12.33 -0.10 7.95 16 20 O -0.52 -8.91 13.23 5.33 0.07 -8.84 16 21 C -0.18 -2.06 5.89 -104.82 -0.62 -2.68 16 22 C 0.14 1.45 10.70 -17.13 -0.18 1.27 16 23 N -0.48 -4.95 10.34 -12.88 -0.13 -5.08 16 24 C 0.14 1.23 10.97 -17.43 -0.19 1.04 16 25 C -0.11 -1.02 6.33 -39.41 -0.25 -1.27 16 26 Cl -0.05 -0.39 27.35 -51.86 -1.42 -1.81 16 27 C 0.03 0.33 5.96 -103.87 -0.62 -0.29 16 28 C -0.13 -1.41 8.57 36.01 0.31 -1.10 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.40 4.37 6.62 -40.82 -0.27 4.10 16 38 H 0.17 1.30 6.47 -52.49 -0.34 0.96 16 39 H 0.17 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 41 H 0.07 0.65 6.78 -51.93 -0.35 0.30 16 42 H 0.11 1.35 5.95 -51.93 -0.31 1.05 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -31.18 360.50 -8.14 -39.31 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.30 Total: 3.50 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.11 Total: 9.03 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.42 Total: -56.25 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.30 Total: -15.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.42 Total: -1.81 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.18 -8.14 -39.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081818553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.813 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds