Wall clock time and date at job start Tue Mar 31 2020 22:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00048 * 2 1 4 4 H 1.08995 * 110.91603 * 26.09719 * 3 2 1 5 5 C 1.54911 * 111.00469 * 262.19343 * 3 2 1 6 6 N 1.47422 * 104.82991 * 204.91656 * 5 3 2 7 7 C 1.36941 * 125.64493 * 204.09002 * 6 5 3 8 8 H 1.08001 * 119.99634 * 180.02562 * 7 6 5 9 9 C 1.38811 * 119.99989 * 0.04638 * 7 6 5 10 10 N 1.31617 * 120.00140 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99872 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47137 * 90.00019 * 11 9 7 13 13 H 1.48500 * 109.47293 * 210.00167 * 11 9 7 14 14 H 1.48501 * 109.47129 * 329.99868 * 11 9 7 15 15 C 1.47019 * 108.70734 * 24.13033 * 6 5 3 16 16 C 1.54328 * 107.26943 * 358.94217 * 15 6 5 17 17 H 1.08994 * 110.72558 * 96.34409 * 16 15 6 18 18 N 1.46508 * 110.71760 * 219.44481 * 16 15 6 19 19 C 1.34770 * 119.99642 * 273.54294 * 18 16 15 20 20 O 1.21545 * 120.00341 * 359.97438 * 19 18 16 21 21 C 1.47841 * 119.99647 * 180.02562 * 19 18 16 22 22 C 1.39563 * 120.55687 * 353.93558 * 21 19 18 23 23 N 1.31662 * 120.59880 * 180.23171 * 22 21 19 24 24 C 1.31948 * 121.89221 * 359.48212 * 23 22 21 25 25 C 1.38431 * 121.06249 * 0.52543 * 24 23 22 26 26 Cl 1.73595 * 120.36376 * 179.76844 * 25 24 23 27 27 C 1.38510 * 119.27593 * 359.74255 * 25 24 23 28 28 C 1.50704 * 120.86270 * 179.97438 * 27 25 24 29 29 H 1.09003 * 109.47759 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47331 * 300.00396 * 1 2 3 31 31 H 1.09003 * 109.47063 * 59.99742 * 1 2 3 32 32 H 1.08997 * 110.36560 * 86.08135 * 5 3 2 33 33 H 1.09004 * 110.36574 * 323.75962 * 5 3 2 34 34 H 0.96999 * 119.99666 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.88371 * 239.52390 * 15 6 5 36 36 H 1.09002 * 109.88530 * 118.35435 * 15 6 5 37 37 H 0.97002 * 119.99862 * 93.54347 * 18 16 15 38 38 H 1.08000 * 119.69962 * 359.96421 * 22 21 19 39 39 H 1.07999 * 119.46951 * 180.26694 * 24 23 22 40 40 H 1.09007 * 109.47102 * 263.70342 * 28 27 25 41 41 H 1.09004 * 109.47254 * 23.69453 * 28 27 25 42 42 H 1.08995 * 109.47479 * 143.69986 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3332 2.0328 0.4479 5 6 2.4155 1.7328 -1.4328 6 7 3.4909 2.7228 -1.2412 7 6 3.8431 3.7010 -2.1325 8 1 4.6494 4.3802 -1.8980 9 6 3.1636 3.8198 -3.3370 10 7 2.1804 2.9926 -3.6224 11 14 3.6436 5.1546 -4.5525 12 1 4.6832 4.6330 -5.4756 13 1 2.4493 5.5657 -5.3335 14 1 4.1797 6.3265 -3.8145 15 6 4.1233 2.4854 0.0646 16 6 3.3824 1.3032 0.7243 17 1 3.9135 0.3680 0.5471 18 7 3.2108 1.5356 2.1606 19 6 4.1855 1.1821 3.0215 20 8 5.2067 0.6700 2.6065 21 6 4.0120 1.4161 4.4710 22 6 2.9024 2.1145 4.9491 23 7 2.7494 2.3273 6.2394 24 6 3.6211 1.8871 7.1267 25 6 4.7483 1.1862 6.7337 26 17 5.8865 0.6205 7.9161 27 6 4.9578 0.9406 5.3867 28 6 6.1730 0.1817 4.9191 29 1 -0.3635 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.5687 2.1873 -1.9469 33 1 2.7852 0.8748 -1.9943 34 1 1.7059 3.0754 -4.4643 35 1 4.0315 3.3747 0.6881 36 1 5.1748 2.2335 -0.0730 37 1 2.3956 1.9439 2.4918 38 1 2.1646 2.4875 4.2541 39 1 3.4547 2.0803 8.1762 40 1 6.9488 0.8866 4.6202 41 1 6.5444 -0.4448 5.7301 42 1 5.9048 -0.4455 4.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081818553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:08 Heat of formation + Delta-G solvation = -33.738614 kcal Electronic energy + Delta-G solvation = -27148.151366 eV Core-core repulsion = 23154.654634 eV Total energy + Delta-G solvation = -3993.496732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.02332 -40.65935 -39.47495 -37.77232 -37.53073 -35.89745 -34.79724 -33.89404 -32.40179 -30.56608 -29.32811 -28.58448 -27.49480 -26.31511 -25.40008 -23.56305 -22.61758 -22.10236 -21.50581 -19.41904 -18.82152 -18.24956 -17.80210 -17.45178 -17.15469 -16.58742 -16.45289 -16.38090 -15.85502 -15.70600 -15.40567 -15.22839 -14.93168 -14.52221 -14.09515 -13.97832 -13.93327 -13.85432 -13.72705 -13.25270 -13.14947 -13.06019 -12.92869 -12.74073 -12.54621 -12.33598 -12.26851 -12.04645 -11.89734 -11.58249 -11.27505 -10.80659 -10.79470 -10.64326 -10.53333 -10.16636 -10.09678 -8.96724 -7.80719 -5.27658 -0.62340 -0.18365 0.86017 1.47888 1.49692 1.58218 1.64440 1.87030 2.44938 2.53923 2.74164 3.12485 3.30360 3.41461 3.45552 3.50181 3.58505 3.81882 3.85998 3.95611 4.04519 4.15554 4.36785 4.41932 4.47894 4.53882 4.61726 4.64706 4.67624 4.83918 4.88436 4.90327 4.94041 5.11575 5.26932 5.32288 5.40946 5.45487 5.69480 6.19659 6.31309 6.36377 6.56435 7.03657 7.06036 7.69773 8.31603 9.20637 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.002658 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.753593 B =10530.432176 C =11215.523289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.395 6.395 3 C 0.077 3.923 4 H 0.093 0.907 5 C 0.146 3.854 6 N -0.619 5.619 7 C -0.242 4.242 8 H 0.082 0.918 9 C -0.061 4.061 10 N -0.947 5.947 11 Si 0.982 3.018 12 H -0.290 1.290 13 H -0.290 1.290 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.155 3.845 17 H 0.085 0.915 18 N -0.695 5.695 19 C 0.565 3.435 20 O -0.555 6.555 21 C -0.189 4.189 22 C 0.150 3.850 23 N -0.486 5.486 24 C 0.146 3.854 25 C -0.107 4.107 26 Cl -0.034 7.034 27 C 0.019 3.981 28 C -0.124 4.124 29 H 0.102 0.898 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.088 0.912 33 H -0.011 1.011 34 H 0.250 0.750 35 H 0.042 0.958 36 H 0.018 0.982 37 H 0.413 0.587 38 H 0.189 0.811 39 H 0.199 0.801 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.326 -4.200 23.515 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.313 6.313 3 C 0.018 3.982 4 H 0.111 0.889 5 C 0.020 3.980 6 N -0.346 5.346 7 C -0.371 4.371 8 H 0.100 0.900 9 C -0.254 4.254 10 N -0.596 5.596 11 Si 0.810 3.190 12 H -0.217 1.217 13 H -0.216 1.216 14 H -0.193 1.193 15 C 0.005 3.995 16 C 0.049 3.951 17 H 0.103 0.897 18 N -0.347 5.347 19 C 0.352 3.648 20 O -0.434 6.434 21 C -0.194 4.194 22 C -0.008 4.008 23 N -0.195 5.195 24 C -0.010 4.010 25 C -0.136 4.136 26 Cl -0.005 7.005 27 C 0.010 3.990 28 C -0.180 4.180 29 H 0.120 0.880 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.007 0.993 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.036 0.964 37 H 0.252 0.748 38 H 0.206 0.794 39 H 0.216 0.784 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.190 -4.245 23.429 23.840 hybrid contribution 0.707 0.340 -1.290 1.510 sum -0.483 -3.905 22.139 22.486 Atomic orbital electron populations 1.23000 0.79249 1.03924 1.00822 1.87845 1.21761 1.26793 1.94950 1.23617 0.93130 0.85002 0.96478 0.88917 1.22061 0.93283 0.90254 0.92427 1.44541 1.38114 1.35188 1.16785 1.19438 1.14027 1.06735 0.96858 0.89985 1.25625 0.98660 1.01555 0.99555 1.69982 1.25327 1.40092 1.24190 0.85029 0.76742 0.78669 0.78564 1.21676 1.21610 1.19291 1.21677 0.95185 0.95597 0.87041 1.21704 0.96139 0.98074 0.79147 0.89703 1.45654 1.20650 1.62753 1.05667 1.18185 0.83052 0.77733 0.85799 1.90757 1.28973 1.44292 1.79412 1.20710 0.99070 1.06509 0.93136 1.23443 0.93918 0.90539 0.92865 1.67972 1.28932 1.20123 1.02459 1.23489 0.86659 0.89277 1.01615 1.21950 0.96256 1.05082 0.90315 1.98386 1.59261 1.87674 1.55195 1.20495 0.95388 0.91954 0.91118 1.21109 0.93714 1.00259 1.02903 0.87966 0.91869 0.94572 0.89467 0.99286 0.94044 0.94017 0.96375 0.74824 0.79404 0.78445 0.89768 0.89640 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.40 -13.40 10.51 -148.98 -1.57 -14.97 16 3 C 0.08 2.78 3.15 31.99 0.10 2.88 16 4 H 0.09 2.89 7.69 -2.39 -0.02 2.87 16 5 C 0.15 7.10 5.62 86.86 0.49 7.58 16 6 N -0.62 -31.65 3.39 -691.98 -2.35 -34.00 16 7 C -0.24 -13.42 10.27 84.03 0.86 -12.56 16 8 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 9 C -0.06 -3.40 5.49 84.86 0.47 -2.93 16 10 N -0.95 -55.01 10.09 21.65 0.22 -54.79 16 11 Si 0.98 44.86 29.55 68.60 2.03 46.89 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.13 5.56 6.99 86.73 0.61 6.17 16 16 C 0.16 5.50 2.97 46.18 0.14 5.64 16 17 H 0.08 3.39 7.69 -2.39 -0.02 3.37 16 18 N -0.70 -18.42 5.08 -439.78 -2.24 -20.65 16 19 C 0.56 15.75 7.72 86.79 0.67 16.42 16 20 O -0.56 -19.28 13.23 -3.86 -0.05 -19.33 16 21 C -0.19 -4.16 5.89 -20.00 -0.12 -4.27 16 22 C 0.15 2.66 10.70 85.04 0.91 3.57 16 23 N -0.49 -8.59 10.34 -194.67 -2.01 -10.61 16 24 C 0.15 2.19 10.97 84.72 0.93 3.12 16 25 C -0.11 -1.83 6.33 22.38 0.14 -1.68 16 26 Cl -0.03 -0.50 27.35 -2.72 -0.07 -0.57 16 27 C 0.02 0.41 5.96 -19.38 -0.12 0.29 16 28 C -0.12 -2.68 8.57 71.24 0.61 -2.07 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 1.23 8.12 -2.39 -0.02 1.21 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 4.71 5.87 -2.39 -0.01 4.70 16 33 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 34 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 35 H 0.04 1.67 8.03 -2.39 -0.02 1.65 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.41 8.01 6.62 -92.71 -0.61 7.40 16 38 H 0.19 2.29 6.47 -2.91 -0.02 2.27 16 39 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 1.51 6.78 -2.38 -0.02 1.50 16 42 H 0.09 2.24 5.95 -2.39 -0.01 2.23 16 Total: -1.00 -69.58 360.50 1.33 -68.25 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.45 Total: 15.74 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.92 Total: 24.04 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.38 Total: -120.04 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -1.62 Total: -34.30 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.07 Total: -0.57 kcal Total: -69.58 1.33 -68.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081818553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.515 kcal (2) G-P(sol) polarization free energy of solvation -69.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds