Wall clock time and date at job start Tue Mar 31 2020 22:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38647 * 120.79611 * 2 1 4 4 C 1.38182 * 119.17772 * 179.97438 * 3 2 1 5 5 C 1.50710 * 119.60229 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46948 * 124.99794 * 5 4 3 7 7 O 1.21281 * 120.00085 * 0.02562 * 6 5 4 8 8 N 1.34767 * 119.99763 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00174 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.88099 * 34.29833 * 9 8 6 11 11 C 1.54911 * 111.00532 * 270.42103 * 9 8 6 12 12 N 1.47463 * 104.81008 * 204.94815 * 11 9 8 13 13 C 1.36939 * 125.62395 * 204.05068 * 12 11 9 14 14 H 1.07994 * 120.00485 * 354.80579 * 13 12 11 15 15 C 1.38819 * 119.99696 * 174.80598 * 13 12 11 16 16 N 1.31619 * 120.00105 * 7.05072 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 187.05015 * 15 13 12 18 18 H 1.48500 * 109.47077 * 94.98704 * 17 15 13 19 19 H 1.48497 * 109.47352 * 214.98677 * 17 15 13 20 20 H 1.48507 * 109.46961 * 334.98914 * 17 15 13 21 21 C 1.47015 * 108.72421 * 24.06544 * 12 11 9 22 22 C 1.54316 * 107.27384 * 358.97936 * 21 12 11 23 23 H 1.09002 * 110.87304 * 219.36980 * 22 21 12 24 24 O 1.42902 * 110.72106 * 96.16667 * 22 21 12 25 25 N 1.31880 * 120.79706 * 359.97438 * 4 3 2 26 26 C 1.31850 * 121.73712 * 359.97438 * 25 4 3 27 27 C 1.38352 * 120.74132 * 0.02562 * 26 25 4 28 28 Cl 1.73598 * 120.42695 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47338 * 270.02591 * 1 2 3 30 30 H 1.09004 * 109.46695 * 30.02707 * 1 2 3 31 31 H 1.09002 * 109.46819 * 150.02024 * 1 2 3 32 32 H 1.07998 * 120.41048 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47169 * 245.00105 * 5 4 3 34 34 H 1.08998 * 109.46645 * 5.00135 * 5 4 3 35 35 H 0.97007 * 120.00284 * 0.02562 * 8 6 5 36 36 H 1.08997 * 110.36499 * 323.75615 * 11 9 8 37 37 H 1.09001 * 110.36680 * 86.07066 * 11 9 8 38 38 H 0.96997 * 120.00005 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.88844 * 239.55556 * 21 12 11 40 40 H 1.09004 * 109.87776 * 118.39359 * 21 12 11 41 41 H 0.96696 * 114.00372 * 66.48387 * 24 22 21 42 42 H 1.07994 * 119.62286 * 180.27559 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5982 1.1519 0.0005 5 6 4.3794 2.4408 0.0011 6 6 5.3362 2.4477 1.1655 7 8 5.3798 1.4993 1.9201 8 7 6.1440 3.5073 1.3674 9 6 7.0746 3.5139 2.4989 10 1 7.4496 2.5102 2.6994 11 6 6.4109 4.1209 3.7602 12 7 7.5342 4.6266 4.5709 13 6 7.5165 4.8184 5.9266 14 1 6.6008 4.6739 6.4806 15 6 8.6757 5.1986 6.5890 16 7 9.7545 5.5093 5.9019 17 14 8.7047 5.2693 8.4554 18 1 9.2403 3.9920 8.9909 19 1 9.5711 6.3923 8.8949 20 1 7.3254 5.4797 8.9642 21 6 8.6756 4.8909 3.6828 22 6 8.2427 4.5051 2.2528 23 1 9.0575 4.0160 1.7190 24 8 7.7880 5.6539 1.5349 25 7 4.2412 0.0005 0.0016 26 6 3.6002 -1.1517 0.0026 27 6 2.2173 -1.1918 0.0021 28 17 1.3818 -2.7134 0.0028 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6968 2.1374 -0.0004 33 1 4.9394 2.5266 -0.9300 34 1 3.6921 3.2820 0.0906 35 1 6.1094 4.2657 0.7636 36 1 5.7456 4.9384 3.4826 37 1 5.8627 3.3536 4.3069 38 1 10.5646 5.7746 6.3647 39 1 9.5300 4.2865 3.9873 40 1 8.9358 5.9488 3.7186 41 1 8.4801 6.3049 1.3552 42 1 4.1612 -2.0746 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083565818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:50 Heat of formation + Delta-G solvation = -28.434154 kcal Electronic energy + Delta-G solvation = -26511.892985 eV Core-core repulsion = 22518.626272 eV Total energy + Delta-G solvation = -3993.266713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.79088 -39.44072 -37.85167 -36.92728 -34.83770 -34.27097 -33.86335 -32.95314 -31.62173 -29.01350 -28.23650 -28.02734 -26.73861 -24.42911 -23.56636 -22.08171 -20.60073 -20.23485 -19.80749 -17.60180 -17.21593 -16.96154 -16.77439 -16.56004 -15.92784 -15.14739 -15.05036 -14.75826 -14.69043 -14.02897 -13.95785 -13.73635 -13.26865 -13.15715 -13.09293 -12.93954 -12.75948 -12.67916 -12.38180 -12.19323 -12.00504 -11.83768 -11.47496 -11.28809 -10.92943 -10.85278 -10.50525 -10.42892 -10.11522 -9.83058 -9.79462 -9.75591 -9.55831 -9.30828 -9.03047 -8.65817 -8.59498 -6.86569 -5.75855 -3.07382 0.64744 0.90532 1.75098 2.88270 3.20181 3.40552 3.46071 3.47487 3.57837 3.99259 4.22914 4.27875 4.49080 4.57151 4.63395 4.81024 4.99938 5.06846 5.14888 5.17555 5.28250 5.31413 5.33458 5.39857 5.52137 5.55435 5.69264 5.74248 5.78951 5.89756 6.10624 6.24269 6.24703 6.63930 6.68788 6.96385 7.33882 7.44779 7.71144 7.73573 7.85991 8.07504 8.20364 8.53225 9.18125 9.78487 10.43503 11.36863 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.002268 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.300205 B =12343.318002 C =13179.271321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.033 4.033 3 C -0.157 4.157 4 C 0.155 3.845 5 C -0.094 4.094 6 C 0.514 3.486 7 O -0.525 6.525 8 N -0.710 5.710 9 C 0.141 3.859 10 H 0.103 0.897 11 C 0.132 3.868 12 N -0.601 5.601 13 C -0.224 4.224 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.925 5.925 17 Si 0.913 3.087 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.154 3.846 22 C 0.068 3.932 23 H 0.061 0.939 24 O -0.568 6.568 25 N -0.443 5.443 26 C 0.126 3.874 27 C -0.099 4.099 28 Cl -0.059 7.059 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.406 0.594 36 H 0.025 0.975 37 H 0.043 0.957 38 H 0.252 0.748 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.379 0.621 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -8.196 -18.650 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.042 4.042 3 C -0.178 4.178 4 C 0.018 3.982 5 C -0.134 4.134 6 C 0.299 3.701 7 O -0.400 6.400 8 N -0.362 5.362 9 C 0.035 3.965 10 H 0.121 0.879 11 C 0.005 3.995 12 N -0.328 5.328 13 C -0.353 4.353 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.572 5.572 17 Si 0.743 3.257 18 H -0.215 1.215 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.028 3.972 22 C 0.008 3.992 23 H 0.079 0.921 24 O -0.374 6.374 25 N -0.152 5.152 26 C -0.033 4.033 27 C -0.127 4.127 28 Cl -0.030 7.030 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.241 0.759 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.227 0.773 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.610 -9.257 -17.886 24.880 hybrid contribution -0.269 0.604 0.779 1.022 sum -14.878 -8.653 -17.106 24.266 Atomic orbital electron populations 1.20893 0.89338 1.03852 1.03569 1.20166 0.97352 0.91213 0.95440 1.21831 0.94224 0.98509 1.03187 1.20693 0.90581 0.93279 0.93675 1.20637 0.98378 0.94552 0.99854 1.20130 0.81280 0.82749 0.85971 1.90753 1.67987 1.34492 1.46795 1.45728 1.39612 1.20229 1.30640 1.22312 0.88788 0.98923 0.86446 0.87929 1.21839 0.91546 0.95728 0.90432 1.44292 1.09121 1.76092 1.03273 1.19090 0.95543 1.39727 0.80906 0.90294 1.24811 0.95806 1.01611 0.98221 1.69926 1.02248 1.51619 1.33454 0.86079 0.77338 0.77251 0.85023 1.21547 1.21771 1.20598 1.21861 0.90919 1.00437 0.83964 1.23507 0.94813 0.86031 0.94831 0.92133 1.86237 1.40813 1.32839 1.77519 1.67626 1.39650 0.97360 1.10532 1.22778 0.89227 0.97036 0.94291 1.22021 0.94111 0.87605 1.09009 1.98361 1.78229 1.29511 1.96906 0.89913 0.90505 0.90445 0.83833 0.86792 0.87094 0.75892 0.95766 0.93836 0.93723 0.92537 0.93108 0.77318 0.81909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 9.69 36.01 0.35 -0.43 16 2 C -0.03 -0.31 5.92 -104.28 -0.62 -0.93 16 3 C -0.16 -1.49 9.42 -39.45 -0.37 -1.86 16 4 C 0.16 1.83 5.76 -82.59 -0.48 1.36 16 5 C -0.09 -0.95 6.10 -29.03 -0.18 -1.13 16 6 C 0.51 7.73 7.76 -10.99 -0.09 7.64 16 7 O -0.52 -10.28 15.02 5.56 0.08 -10.20 16 8 N -0.71 -10.53 5.18 -51.72 -0.27 -10.80 16 9 C 0.14 2.63 3.25 -65.78 -0.21 2.41 16 10 H 0.10 2.09 7.63 -51.93 -0.40 1.69 16 11 C 0.13 2.92 6.92 -2.51 -0.02 2.90 16 12 N -0.60 -15.58 3.40 -170.05 -0.58 -16.16 16 13 C -0.22 -6.37 10.27 -15.06 -0.15 -6.53 16 14 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 15 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 16 N -0.92 -26.88 10.36 55.49 0.57 -26.30 16 17 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.15 3.61 5.15 -3.07 -0.02 3.59 16 22 C 0.07 1.22 4.20 -24.90 -0.10 1.11 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 O -0.57 -8.77 12.13 -35.23 -0.43 -9.20 16 25 N -0.44 -6.08 9.22 -9.44 -0.09 -6.16 16 26 C 0.13 1.47 10.99 -17.50 -0.19 1.28 16 27 C -0.10 -1.02 6.34 -39.36 -0.25 -1.27 16 28 Cl -0.06 -0.52 27.48 -51.86 -1.42 -1.95 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.08 0.48 7.03 -51.93 -0.37 0.11 16 32 H 0.14 0.93 7.95 -52.49 -0.42 0.52 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.11 0.77 7.87 -51.93 -0.41 0.37 16 35 H 0.41 5.10 7.57 -40.82 -0.31 4.79 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.47 7.30 -51.93 -0.38 1.09 16 40 H 0.05 1.30 7.54 -51.93 -0.39 0.90 16 41 H 0.38 4.51 9.12 45.56 0.42 4.93 16 42 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -35.13 365.93 -8.81 -43.94 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.75 Total: 6.21 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: -2.42 Total: 7.81 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.36 Total: -59.43 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.34 Total: -19.40 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.13 -8.81 -43.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083565818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.510 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds