Wall clock time and date at job start Tue Mar 31 2020 22:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38647 * 120.79611 * 2 1 4 4 C 1.38182 * 119.17772 * 179.97438 * 3 2 1 5 5 C 1.50710 * 119.60229 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46948 * 124.99794 * 5 4 3 7 7 O 1.21281 * 120.00085 * 0.02562 * 6 5 4 8 8 N 1.34767 * 119.99763 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00174 * 180.02562 * 8 6 5 10 10 H 1.09006 * 110.88099 * 34.29833 * 9 8 6 11 11 C 1.54911 * 111.00532 * 270.42103 * 9 8 6 12 12 N 1.47463 * 104.81008 * 204.94815 * 11 9 8 13 13 C 1.36939 * 125.62395 * 204.05068 * 12 11 9 14 14 H 1.07994 * 120.00485 * 354.80579 * 13 12 11 15 15 C 1.38819 * 119.99696 * 174.80598 * 13 12 11 16 16 N 1.31619 * 120.00105 * 7.05072 * 15 13 12 17 17 Si 1.86800 * 120.00016 * 187.05015 * 15 13 12 18 18 H 1.48500 * 109.47077 * 94.98704 * 17 15 13 19 19 H 1.48497 * 109.47352 * 214.98677 * 17 15 13 20 20 H 1.48507 * 109.46961 * 334.98914 * 17 15 13 21 21 C 1.47015 * 108.72421 * 24.06544 * 12 11 9 22 22 C 1.54316 * 107.27384 * 358.97936 * 21 12 11 23 23 H 1.09002 * 110.87304 * 219.36980 * 22 21 12 24 24 O 1.42902 * 110.72106 * 96.16667 * 22 21 12 25 25 N 1.31880 * 120.79706 * 359.97438 * 4 3 2 26 26 C 1.31850 * 121.73712 * 359.97438 * 25 4 3 27 27 C 1.38352 * 120.74132 * 0.02562 * 26 25 4 28 28 Cl 1.73598 * 120.42695 * 179.97438 * 27 26 25 29 29 H 1.08998 * 109.47338 * 270.02591 * 1 2 3 30 30 H 1.09004 * 109.46695 * 30.02707 * 1 2 3 31 31 H 1.09002 * 109.46819 * 150.02024 * 1 2 3 32 32 H 1.07998 * 120.41048 * 359.97438 * 3 2 1 33 33 H 1.08994 * 109.47169 * 245.00105 * 5 4 3 34 34 H 1.08998 * 109.46645 * 5.00135 * 5 4 3 35 35 H 0.97007 * 120.00284 * 0.02562 * 8 6 5 36 36 H 1.08997 * 110.36499 * 323.75615 * 11 9 8 37 37 H 1.09001 * 110.36680 * 86.07066 * 11 9 8 38 38 H 0.96997 * 120.00005 * 180.02562 * 16 15 13 39 39 H 1.08996 * 109.88844 * 239.55556 * 21 12 11 40 40 H 1.09004 * 109.87776 * 118.39359 * 21 12 11 41 41 H 0.96696 * 114.00372 * 66.48387 * 24 22 21 42 42 H 1.07994 * 119.62286 * 180.27559 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1910 0.0000 4 6 3.5982 1.1519 0.0005 5 6 4.3794 2.4408 0.0011 6 6 5.3362 2.4477 1.1655 7 8 5.3798 1.4993 1.9201 8 7 6.1440 3.5073 1.3674 9 6 7.0746 3.5139 2.4989 10 1 7.4496 2.5102 2.6994 11 6 6.4109 4.1209 3.7602 12 7 7.5342 4.6266 4.5709 13 6 7.5165 4.8184 5.9266 14 1 6.6008 4.6739 6.4806 15 6 8.6757 5.1986 6.5890 16 7 9.7545 5.5093 5.9019 17 14 8.7047 5.2693 8.4554 18 1 9.2403 3.9920 8.9909 19 1 9.5711 6.3923 8.8949 20 1 7.3254 5.4797 8.9642 21 6 8.6756 4.8909 3.6828 22 6 8.2427 4.5051 2.2528 23 1 9.0575 4.0160 1.7190 24 8 7.7880 5.6539 1.5349 25 7 4.2412 0.0005 0.0016 26 6 3.6002 -1.1517 0.0026 27 6 2.2173 -1.1918 0.0021 28 17 1.3818 -2.7134 0.0028 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6968 2.1374 -0.0004 33 1 4.9394 2.5266 -0.9300 34 1 3.6921 3.2820 0.0906 35 1 6.1094 4.2657 0.7636 36 1 5.7456 4.9384 3.4826 37 1 5.8627 3.3536 4.3069 38 1 10.5646 5.7746 6.3647 39 1 9.5300 4.2865 3.9873 40 1 8.9358 5.9488 3.7186 41 1 8.4801 6.3049 1.3552 42 1 4.1612 -2.0746 0.0079 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083565818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:49 Heat of formation + Delta-G solvation = -55.199465 kcal Electronic energy + Delta-G solvation = -26513.053616 eV Core-core repulsion = 22518.626272 eV Total energy + Delta-G solvation = -3994.427344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.63632 -40.71760 -39.31602 -37.67897 -36.44249 -35.37262 -34.93710 -33.91614 -33.41337 -30.50377 -29.45282 -28.83955 -28.25417 -26.31819 -24.34274 -23.11516 -22.28439 -21.62777 -21.11831 -19.23343 -18.36283 -18.22910 -17.70981 -17.58229 -17.03224 -16.82023 -16.23728 -16.06211 -15.81567 -15.56055 -15.12644 -14.81699 -14.49220 -14.47309 -14.36430 -13.99116 -13.83628 -13.70110 -13.59629 -13.23728 -13.17073 -12.83763 -12.77001 -12.75288 -12.53041 -12.26883 -12.18390 -12.09518 -11.90986 -11.89361 -10.95142 -10.83342 -10.75678 -10.50793 -10.41536 -10.01868 -9.81191 -8.95103 -7.91064 -5.25398 -0.13028 0.16961 1.00680 1.43792 1.46417 1.54787 1.73625 2.10676 2.47348 2.68522 3.20319 3.22281 3.29001 3.53561 3.60365 3.64494 3.82537 3.92166 3.97015 4.01669 4.22199 4.28879 4.40828 4.49362 4.52302 4.62730 4.65821 4.68575 4.73431 4.83788 4.88816 5.07275 5.13023 5.16558 5.36705 5.45286 5.53509 5.55123 5.64176 6.13910 6.69571 6.89932 6.92956 7.05662 7.39288 7.70100 8.34130 9.19394 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.002268 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.300205 B =12343.318002 C =13179.271321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.038 4.038 3 C -0.152 4.152 4 C 0.131 3.869 5 C -0.083 4.083 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.697 5.697 9 C 0.154 3.846 10 H 0.083 0.917 11 C 0.134 3.866 12 N -0.623 5.623 13 C -0.247 4.247 14 H 0.076 0.924 15 C -0.060 4.060 16 N -0.946 5.946 17 Si 0.978 3.022 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.270 1.270 21 C 0.159 3.841 22 C 0.094 3.906 23 H 0.089 0.911 24 O -0.561 6.561 25 N -0.481 5.481 26 C 0.105 3.895 27 C -0.105 4.105 28 Cl -0.050 7.050 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.179 0.821 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.421 0.579 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.250 0.750 39 H 0.023 0.977 40 H 0.026 0.974 41 H 0.398 0.602 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.877 -7.288 -20.217 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.047 4.047 3 C -0.172 4.172 4 C -0.006 4.006 5 C -0.122 4.122 6 C 0.298 3.702 7 O -0.454 6.454 8 N -0.350 5.350 9 C 0.047 3.953 10 H 0.101 0.899 11 C 0.007 3.993 12 N -0.350 5.350 13 C -0.376 4.376 14 H 0.093 0.907 15 C -0.253 4.253 16 N -0.595 5.595 17 Si 0.806 3.194 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.195 1.195 21 C 0.033 3.967 22 C 0.034 3.966 23 H 0.107 0.893 24 O -0.370 6.370 25 N -0.190 5.190 26 C -0.054 4.054 27 C -0.134 4.134 28 Cl -0.022 7.022 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.196 0.804 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.259 0.741 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.249 0.751 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -16.445 -8.322 -19.510 26.839 hybrid contribution 0.239 0.306 1.256 1.315 sum -16.207 -8.016 -18.253 25.693 Atomic orbital electron populations 1.20969 0.87201 1.05114 1.04148 1.20583 0.98904 0.90808 0.94385 1.22191 0.93448 0.99969 1.01555 1.21078 0.91875 0.93231 0.94447 1.20730 0.97970 0.95308 0.98217 1.21039 0.81105 0.81494 0.86535 1.90741 1.69407 1.36315 1.48970 1.45563 1.38882 1.21072 1.29496 1.21826 0.89378 0.97730 0.86387 0.89924 1.21879 0.90779 0.95182 0.91452 1.44581 1.10806 1.76288 1.03287 1.19397 0.95735 1.39879 0.82583 0.90650 1.25621 0.95548 1.01586 1.02565 1.70118 1.02476 1.52067 1.34801 0.85076 0.77644 0.76957 0.79762 1.21483 1.21533 1.19516 1.21725 0.89578 0.98274 0.87111 1.23084 0.95010 0.86705 0.91835 0.89311 1.86195 1.41754 1.32626 1.76419 1.67565 1.41139 0.98471 1.11874 1.22914 0.90163 0.97010 0.95265 1.22115 0.93883 0.88565 1.08818 1.98358 1.77866 1.29073 1.96856 0.89487 0.88231 0.90278 0.80404 0.84210 0.83100 0.74078 0.95376 0.95840 0.94084 0.95842 0.95609 0.75076 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.69 71.24 0.69 -0.52 16 2 C -0.04 -0.64 5.92 -19.65 -0.12 -0.76 16 3 C -0.15 -2.46 9.42 22.35 0.21 -2.25 16 4 C 0.13 2.86 5.76 42.54 0.25 3.10 16 5 C -0.08 -1.42 6.10 29.11 0.18 -1.24 16 6 C 0.51 14.60 7.76 87.66 0.68 15.28 16 7 O -0.58 -22.73 15.02 -3.03 -0.05 -22.77 16 8 N -0.70 -19.32 5.18 -435.95 -2.26 -21.58 16 9 C 0.15 5.66 3.25 46.38 0.15 5.81 16 10 H 0.08 3.42 7.63 -2.38 -0.02 3.40 16 11 C 0.13 5.99 6.92 86.85 0.60 6.59 16 12 N -0.62 -33.08 3.40 -691.92 -2.35 -35.43 16 13 C -0.25 -14.36 10.27 84.03 0.86 -13.50 16 14 H 0.08 4.29 7.84 -2.91 -0.02 4.27 16 15 C -0.06 -3.45 5.48 84.86 0.46 -2.98 16 16 N -0.95 -56.26 10.36 21.65 0.22 -56.04 16 17 Si 0.98 46.48 29.56 68.60 2.03 48.50 16 18 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 21 C 0.16 7.59 5.15 86.73 0.45 8.04 16 22 C 0.09 3.24 4.20 31.78 0.13 3.38 16 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 24 O -0.56 -15.83 12.13 -148.98 -1.81 -17.64 16 25 N -0.48 -13.12 9.22 -183.79 -1.69 -14.82 16 26 C 0.10 2.49 10.99 84.72 0.93 3.42 16 27 C -0.10 -2.10 6.34 22.42 0.14 -1.95 16 28 Cl -0.05 -0.86 27.48 -2.72 -0.07 -0.93 16 29 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.58 8.10 -2.39 -0.02 0.56 16 31 H 0.08 0.80 7.03 -2.39 -0.02 0.78 16 32 H 0.18 1.50 7.95 -2.91 -0.02 1.48 16 33 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.15 1.37 7.87 -2.39 -0.02 1.35 16 35 H 0.42 9.16 7.57 -92.70 -0.70 8.46 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.59 16 39 H 0.02 1.26 7.30 -2.39 -0.02 1.24 16 40 H 0.03 1.34 7.54 -2.38 -0.02 1.33 16 41 H 0.40 8.32 9.12 -74.06 -0.68 7.64 16 42 H 0.17 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -79.91 365.93 -0.66 -80.57 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -0.30 Total: 17.72 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: 5.62 Total: 22.42 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -6.08 Total: -127.86 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -1.85 Total: -40.41 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.07 Total: -0.93 kcal Total: -79.91 -0.66 -80.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083565818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.370 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds