Wall clock time and date at job start Tue Mar 31 2020 22:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30213 * 126.79124 * 2 1 4 4 O 1.20913 * 111.65002 * 179.97438 * 3 2 1 5 5 C 1.34073 * 111.54886 * 359.97438 * 4 3 2 6 6 Cl 1.73594 * 126.79418 * 180.02562 * 5 4 3 7 7 C 1.35673 * 106.40370 * 359.73435 * 5 4 3 8 8 C 1.50705 * 128.01149 * 180.27377 * 7 5 4 9 9 C 1.50698 * 109.47408 * 270.15023 * 8 7 5 10 10 O 1.21278 * 119.99847 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00375 * 179.97438 * 9 8 7 12 12 C 1.47295 * 136.54016 * 0.02562 * 11 9 8 13 13 C 1.54083 * 87.60539 * 151.35843 * 12 11 9 14 14 H 1.09003 * 115.03853 * 142.49736 * 13 12 11 15 15 C 1.53059 * 111.39143 * 273.97090 * 13 12 11 16 16 C 1.53146 * 109.21192 * 142.40066 * 15 13 12 17 17 N 1.46539 * 108.25102 * 301.58791 * 16 15 13 18 18 C 1.36943 * 119.73512 * 236.39909 * 17 16 15 19 19 H 1.07997 * 119.99490 * 150.86978 * 18 17 16 20 20 C 1.38806 * 120.00305 * 330.86716 * 18 17 16 21 21 N 1.31622 * 120.00018 * 158.23268 * 20 18 17 22 22 Si 1.86805 * 120.00158 * 338.23678 * 20 18 17 23 23 H 1.48494 * 109.47110 * 94.78899 * 22 20 18 24 24 H 1.48497 * 109.46965 * 214.79015 * 22 20 18 25 25 H 1.48501 * 109.46660 * 334.78821 * 22 20 18 26 26 C 1.45693 * 120.52286 * 56.42371 * 17 16 15 27 27 C 1.46462 * 136.54805 * 179.62632 * 11 9 8 28 28 H 1.08996 * 111.44503 * 96.38401 * 27 11 9 29 29 H 1.09006 * 109.46424 * 90.03060 * 1 2 3 30 30 H 1.09000 * 109.47074 * 330.03351 * 1 2 3 31 31 H 1.08997 * 109.47516 * 210.02821 * 1 2 3 32 32 H 1.09000 * 109.46906 * 30.15175 * 8 7 5 33 33 H 1.08995 * 109.47275 * 150.14528 * 8 7 5 34 34 H 1.08998 * 113.52450 * 266.04441 * 12 11 9 35 35 H 1.09000 * 113.53149 * 36.60594 * 12 11 9 36 36 H 1.09000 * 109.51477 * 262.31914 * 15 13 12 37 37 H 1.08990 * 109.51747 * 22.42471 * 15 13 12 38 38 H 1.09007 * 109.71099 * 61.27965 * 16 15 13 39 39 H 1.09003 * 109.70979 * 181.85484 * 16 15 13 40 40 H 0.97003 * 119.99681 * 180.02562 * 21 20 18 41 41 H 1.09000 * 108.78990 * 80.90014 * 26 17 16 42 42 H 1.09001 * 108.78857 * 199.22617 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7269 0.0005 5 6 3.6037 -0.6054 0.0015 6 17 5.1011 -1.4835 0.0031 7 6 2.3531 -1.1314 0.0076 8 6 1.9580 -2.5857 0.0167 9 6 1.8263 -3.0795 -1.4009 10 8 2.0333 -2.3249 -2.3276 11 7 1.4794 -4.3598 -1.6392 12 6 1.1554 -5.5479 -0.8309 13 6 0.2654 -6.0188 -1.9973 14 1 0.2759 -7.0932 -2.1809 15 6 -1.1403 -5.4206 -1.9036 16 6 -1.6391 -5.0829 -3.3117 17 7 -0.6943 -4.1423 -3.9199 18 6 -1.1419 -2.9336 -4.3826 19 1 -0.4808 -2.0797 -4.3894 20 6 -2.4453 -2.8061 -4.8427 21 7 -3.0165 -1.6209 -4.8813 22 14 -3.3887 -4.3164 -5.4070 23 1 -4.2078 -4.8369 -4.2830 24 1 -4.2772 -3.9506 -6.5391 25 1 -2.4308 -5.3623 -5.8473 26 6 0.7174 -4.4831 -4.0368 27 6 1.2474 -5.1968 -2.8185 28 1 2.1343 -5.7750 -3.0775 29 1 -0.3632 -0.0005 -1.0278 30 1 -0.3633 0.8903 0.5133 31 1 -0.3634 -0.8897 0.5142 32 1 2.7215 -3.1664 0.5343 33 1 1.0039 -2.6998 0.5313 34 1 2.0122 -6.1964 -0.6479 35 1 0.5986 -5.3176 0.0774 36 1 -1.8136 -6.1432 -1.4425 37 1 -1.1107 -4.5138 -1.2998 38 1 -1.6905 -5.9918 -3.9113 39 1 -2.6268 -4.6258 -3.2520 40 1 -3.9275 -1.5318 -5.2025 41 1 0.8529 -5.1239 -4.9081 42 1 1.2888 -3.5666 -4.1836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084719302.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:31 Heat of formation + Delta-G solvation = 75.844667 kcal Electronic energy + Delta-G solvation = -28452.959034 eV Core-core repulsion = 24464.214190 eV Total energy + Delta-G solvation = -3988.744844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.21937 -41.97743 -39.46378 -38.31669 -37.28228 -36.40852 -33.96065 -33.56040 -32.67543 -31.34191 -29.94004 -29.30049 -28.49013 -25.36071 -25.02058 -23.35641 -22.70618 -22.62374 -21.32726 -19.36416 -19.06130 -18.87667 -18.55579 -17.68576 -17.21619 -17.07247 -16.90106 -16.32358 -15.57009 -15.45477 -15.27572 -14.75500 -14.68919 -14.40595 -14.31467 -14.22105 -14.02495 -13.86651 -13.74509 -13.51085 -13.41541 -13.16972 -12.90793 -12.78874 -12.60559 -12.54223 -12.19618 -12.07466 -12.02227 -11.53637 -11.38009 -11.26309 -11.09949 -10.70162 -10.65625 -10.26531 -9.53159 -8.84565 -8.15499 -5.47428 -0.11375 0.09350 0.88216 1.28994 1.42222 1.52515 1.77055 2.00175 2.42003 2.47190 2.91654 3.06515 3.35542 3.43057 3.46092 3.57908 3.69092 3.83031 3.94029 4.17292 4.31761 4.36744 4.42199 4.48420 4.49979 4.55013 4.60064 4.64795 4.67359 4.69753 4.80982 4.89311 4.94136 5.05266 5.06323 5.11814 5.24686 5.29823 5.60626 5.92137 6.14349 6.92272 6.94405 6.99976 7.30926 7.69295 8.01289 9.05510 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014002 B = 0.004175 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.191927 B = 6705.295967 C = 7843.215247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.037 3.963 3 N -0.374 5.374 4 O 0.101 5.899 5 C 0.007 3.993 6 Cl 0.070 6.930 7 C -0.154 4.154 8 C -0.049 4.049 9 C 0.536 3.464 10 O -0.583 6.583 11 N -0.642 5.642 12 C 0.110 3.890 13 C -0.103 4.103 14 H 0.140 0.860 15 C -0.109 4.109 16 C 0.119 3.881 17 N -0.607 5.607 18 C -0.243 4.243 19 H 0.020 0.980 20 C -0.038 4.038 21 N -0.961 5.961 22 Si 0.958 3.042 23 H -0.265 1.265 24 H -0.315 1.315 25 H -0.258 1.258 26 C 0.141 3.859 27 C 0.118 3.882 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.142 0.858 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.261 0.739 41 H 0.028 0.972 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.071 -12.992 17.927 25.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.121 4.121 3 N -0.082 5.082 4 O 0.036 5.964 5 C -0.083 4.083 6 Cl 0.098 6.902 7 C -0.159 4.159 8 C -0.089 4.089 9 C 0.326 3.674 10 O -0.463 6.463 11 N -0.378 5.378 12 C -0.011 4.011 13 C -0.122 4.122 14 H 0.158 0.842 15 C -0.148 4.148 16 C -0.005 4.005 17 N -0.331 5.331 18 C -0.373 4.373 19 H 0.037 0.963 20 C -0.232 4.232 21 N -0.608 5.608 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.244 1.244 25 H -0.182 1.182 26 C 0.015 3.985 27 C 0.013 3.987 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.092 -11.058 17.461 23.946 hybrid contribution -0.393 -0.131 -1.241 1.309 sum 11.699 -11.190 16.220 22.916 Atomic orbital electron populations 1.20268 0.84299 1.05597 1.03130 1.23658 0.99945 0.88089 1.00425 1.73882 0.88936 1.23709 1.21659 1.84842 1.21912 1.21289 1.68348 1.24690 0.91708 0.84744 1.07150 1.98435 1.26806 1.68368 1.96584 1.20388 0.89913 0.97710 1.07912 1.19966 1.06851 0.88167 0.93896 1.20323 0.75688 0.80082 0.91273 1.90755 1.51992 1.55751 1.47790 1.49586 1.67779 1.08111 1.12302 1.23613 0.98668 0.83187 0.95634 1.22743 0.92928 1.00698 0.95817 0.84249 1.21745 0.96343 1.00464 0.96262 1.21323 0.92632 0.92213 0.94368 1.43826 1.03950 1.16477 1.68886 1.18627 0.96577 0.86542 1.35519 0.96259 1.25995 0.98190 0.99278 0.99701 1.70037 1.14031 1.25511 1.51183 0.85711 0.77959 0.80275 0.77443 1.19116 1.24384 1.18228 1.20312 0.84504 0.97783 0.95901 1.22363 0.98760 0.89776 0.87772 0.87022 0.92304 0.88738 0.87485 0.84063 0.84924 0.85714 0.88211 0.88329 0.93498 0.94008 0.93675 0.93066 0.95439 0.95053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.22 10.39 71.24 0.74 -1.48 16 2 C 0.04 1.19 7.32 43.55 0.32 1.51 16 3 N -0.37 -12.83 12.07 -49.43 -0.60 -13.42 16 4 O 0.10 3.19 11.20 71.34 0.80 3.99 16 5 C 0.01 0.21 8.12 67.23 0.55 0.75 16 6 Cl 0.07 1.46 29.23 -2.72 -0.08 1.38 16 7 C -0.15 -4.41 4.82 -19.71 -0.10 -4.50 16 8 C -0.05 -1.11 5.96 29.10 0.17 -0.94 16 9 C 0.54 17.45 8.01 87.66 0.70 18.15 16 10 O -0.58 -26.71 15.28 -3.02 -0.05 -26.75 16 11 N -0.64 -17.04 3.34 -867.30 -2.90 -19.93 16 12 C 0.11 1.51 7.78 81.09 0.63 2.14 16 13 C -0.10 -1.99 4.57 -10.69 -0.05 -2.04 16 14 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 15 C -0.11 -2.94 5.69 30.66 0.17 -2.77 16 16 C 0.12 4.66 4.17 86.42 0.36 5.03 16 17 N -0.61 -29.13 2.76 -707.79 -1.95 -31.09 16 18 C -0.24 -14.77 9.93 84.03 0.83 -13.93 16 19 H 0.02 1.40 8.01 -2.91 -0.02 1.38 16 20 C -0.04 -2.28 5.17 84.86 0.44 -1.84 16 21 N -0.96 -63.15 13.97 21.65 0.30 -62.84 16 22 Si 0.96 47.01 24.42 68.60 1.67 48.69 16 23 H -0.27 -11.84 6.70 99.48 0.67 -11.17 16 24 H -0.31 -15.87 7.11 99.48 0.71 -15.17 16 25 H -0.26 -11.96 6.74 99.48 0.67 -11.29 16 26 C 0.14 5.82 6.16 85.82 0.53 6.35 16 27 C 0.12 3.23 3.98 38.50 0.15 3.38 16 28 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.11 2.49 7.65 -2.39 -0.02 2.47 16 32 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.13 2.35 7.65 -2.39 -0.02 2.33 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.00 8.05 -2.39 -0.02 0.98 16 36 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.46 7.68 -2.39 -0.02 1.44 16 38 H 0.04 1.52 7.25 -2.38 -0.02 1.50 16 39 H 0.05 2.02 4.53 -2.39 -0.01 2.01 16 40 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.03 1.57 6.46 -2.39 -0.02 1.56 16 Total: -1.00 -88.06 355.58 3.64 -84.42 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.98 Total: 5.73 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 5.46 Total: 9.83 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.14 Total: -127.29 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.75 Total: -22.76 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.69 kcal Atomic # 17 Polarization: 1.46 SS G_CDS: -0.08 Total: 1.38 kcal Total: -88.06 3.64 -84.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084719302.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.264 kcal (2) G-P(sol) polarization free energy of solvation -88.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds