Wall clock time and date at job start Tue Mar 31 2020 22:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38514 * 120.86214 * 2 1 4 4 Cl 1.73600 * 120.36052 * 0.02562 * 3 2 1 5 5 C 1.38430 * 119.28013 * 180.02562 * 3 2 1 6 6 N 1.31945 * 121.05863 * 0.02562 * 5 3 2 7 7 C 1.31665 * 121.89867 * 359.69881 * 6 5 3 8 8 C 1.39562 * 120.59013 * 0.59009 * 7 6 5 9 9 C 1.47841 * 120.55068 * 179.70376 * 8 7 6 10 10 O 1.21559 * 120.00153 * 174.15755 * 9 8 7 11 11 N 1.34779 * 120.00328 * 354.15590 * 9 8 7 12 12 C 1.46495 * 120.00452 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.45583 * 35.02673 * 12 11 9 14 14 C 1.53042 * 109.46122 * 275.07154 * 12 11 9 15 15 C 1.53624 * 109.24142 * 178.48795 * 14 12 11 16 16 N 1.46927 * 108.54255 * 54.85614 * 15 14 12 17 17 C 1.36932 * 120.63018 * 126.36854 * 16 15 14 18 18 H 1.07999 * 120.00086 * 332.74562 * 17 16 15 19 19 C 1.38812 * 120.00147 * 152.74558 * 17 16 15 20 20 N 1.31620 * 119.99968 * 344.25485 * 19 17 16 21 21 Si 1.86802 * 120.00215 * 164.25494 * 19 17 16 22 22 H 1.48509 * 109.47130 * 270.00118 * 21 19 17 23 23 H 1.48494 * 109.47047 * 30.00111 * 21 19 17 24 24 H 1.48495 * 109.47109 * 150.00406 * 21 19 17 25 25 C 1.46925 * 118.73994 * 306.08996 * 16 15 14 26 26 C 1.53036 * 109.46409 * 154.99957 * 12 11 9 27 27 H 1.09003 * 109.49611 * 61.43530 * 26 12 11 28 28 O 1.42903 * 109.49619 * 301.34189 * 26 12 11 29 29 H 1.09006 * 109.46877 * 263.59527 * 1 2 3 30 30 H 1.08996 * 109.47282 * 23.59543 * 1 2 3 31 31 H 1.09001 * 109.47013 * 143.60136 * 1 2 3 32 32 H 1.07993 * 119.46564 * 179.97438 * 5 3 2 33 33 H 1.07996 * 119.70664 * 180.31597 * 7 6 5 34 34 H 0.97003 * 119.99625 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.49507 * 298.56135 * 14 12 11 36 36 H 1.09001 * 109.49721 * 58.62834 * 14 12 11 37 37 H 1.08999 * 109.73783 * 295.11806 * 15 14 12 38 38 H 1.09001 * 109.66467 * 174.54918 * 15 14 12 39 39 H 0.96999 * 119.99919 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.58949 * 173.64473 * 25 16 15 41 41 H 1.09000 * 109.58940 * 293.93612 * 25 16 15 42 42 H 0.96704 * 113.99693 * 180.15648 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3817 2.7106 0.0007 5 6 3.6012 1.1508 -0.0005 6 7 4.2505 0.0021 -0.0016 7 6 3.6197 -1.1536 0.0038 8 6 2.2250 -1.2015 -0.0016 9 6 1.5176 -2.4997 -0.0022 10 8 0.3068 -2.5322 0.1003 11 7 2.2152 -3.6473 -0.1164 12 6 1.5143 -4.9336 -0.1175 13 1 0.5548 -4.8239 -0.6230 14 6 1.2813 -5.3886 1.3250 15 6 0.5128 -6.7188 1.3184 16 7 1.2547 -7.6829 0.4944 17 6 1.6031 -8.9079 0.9973 18 1 1.7477 -9.0341 2.0601 19 6 1.7706 -9.9876 0.1411 20 7 1.3050 -9.9308 -1.0886 21 14 2.6569 -11.5213 0.7342 22 1 4.1098 -11.3927 0.4549 23 1 2.4460 -11.6810 2.1954 24 1 2.1196 -12.7094 0.0237 25 6 1.6101 -7.3100 -0.8816 26 6 2.3613 -5.9752 -0.8522 27 1 3.3111 -6.1037 -0.3329 28 8 2.6042 -5.5350 -2.1899 29 1 -0.3633 -0.1146 1.0213 30 1 -0.3633 0.9417 -0.4113 31 1 -0.3633 -0.8272 -0.6098 32 1 4.1582 2.0760 -0.0010 33 1 4.1867 -2.0727 0.0079 34 1 3.1815 -3.6213 -0.1978 35 1 2.2412 -5.5226 1.8237 36 1 0.6982 -4.6351 1.8544 37 1 -0.4814 -6.5676 0.8979 38 1 0.4274 -7.0981 2.3367 39 1 1.4223 -10.6851 -1.6870 40 1 2.2489 -8.0793 -1.3153 41 1 0.7037 -7.2084 -1.4784 42 1 3.1346 -6.1491 -2.7159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090337608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:59 Heat of formation + Delta-G solvation = -32.147583 kcal Electronic energy + Delta-G solvation = -27254.493727 eV Core-core repulsion = 23261.065987 eV Total energy + Delta-G solvation = -3993.427739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.09114 -39.45778 -37.90967 -37.06176 -35.31983 -34.76680 -33.86794 -32.55808 -31.45980 -29.52025 -28.92157 -28.11978 -25.51455 -24.52534 -22.85035 -22.45348 -21.77447 -20.63928 -19.61697 -18.04830 -17.40177 -16.94042 -16.65936 -16.57844 -15.83111 -15.61983 -15.40831 -14.89081 -14.32533 -14.20007 -13.84064 -13.63223 -13.39894 -13.30742 -13.10150 -12.99695 -12.72853 -12.40512 -12.30637 -12.24734 -11.97815 -11.71750 -11.56861 -11.25082 -10.88567 -10.83299 -10.48344 -10.32596 -10.23249 -10.05688 -9.90256 -9.75539 -9.56506 -9.40426 -9.36112 -8.86160 -8.58521 -6.84233 -5.90766 -3.35303 0.20561 0.62561 1.59050 2.66630 3.10413 3.30246 3.37849 3.39024 3.43742 3.88731 4.18609 4.26468 4.36402 4.43490 4.55451 4.68945 4.94443 5.18322 5.25946 5.32306 5.35854 5.39679 5.52139 5.52935 5.74926 5.85151 5.88580 5.92909 6.03683 6.08172 6.21220 6.36571 6.39593 6.64028 6.72132 6.84609 7.08341 7.32825 7.42658 7.54290 7.67694 8.03990 8.19433 8.31530 9.07059 9.69408 10.24608 11.17179 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.002403 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.400736 B =11647.842217 C =11941.428598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 C -0.105 4.105 4 Cl -0.047 7.047 5 C 0.136 3.864 6 N -0.476 5.476 7 C 0.142 3.858 8 C -0.175 4.175 9 C 0.561 3.439 10 O -0.528 6.528 11 N -0.706 5.706 12 C 0.163 3.837 13 H 0.091 0.909 14 C -0.140 4.140 15 C 0.145 3.855 16 N -0.590 5.590 17 C -0.254 4.254 18 H 0.070 0.930 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.278 1.278 24 H -0.290 1.290 25 C 0.146 3.854 26 C 0.072 3.928 27 H 0.053 0.947 28 O -0.573 6.573 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.396 0.604 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.061 0.939 39 H 0.256 0.744 40 H 0.099 0.901 41 H 0.029 0.971 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.277 21.102 0.991 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.019 3.981 3 C -0.134 4.134 4 Cl -0.018 7.018 5 C -0.021 4.021 6 N -0.185 5.185 7 C -0.016 4.016 8 C -0.180 4.180 9 C 0.347 3.653 10 O -0.406 6.406 11 N -0.355 5.355 12 C 0.059 3.941 13 H 0.109 0.891 14 C -0.180 4.180 15 C 0.018 3.982 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.736 3.264 22 H -0.214 1.214 23 H -0.203 1.203 24 H -0.217 1.217 25 C 0.019 3.981 26 C 0.011 3.989 27 H 0.070 0.930 28 O -0.378 6.378 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.125 0.875 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 3.878 21.555 1.139 21.931 hybrid contribution 0.414 -1.146 -0.001 1.219 sum 4.292 20.409 1.138 20.886 Atomic orbital electron populations 1.21199 0.88036 1.04433 1.04767 1.20393 0.98348 0.89737 0.89592 1.21936 0.93979 0.88053 1.09470 1.98377 1.78146 1.28405 1.96884 1.22976 0.89367 0.97352 0.92454 1.67856 1.39506 0.97789 1.13360 1.23135 0.90595 0.96737 0.91120 1.20985 0.94888 0.94444 1.07720 1.17824 0.87053 0.83194 0.77255 1.90746 1.13242 1.86898 1.49688 1.46049 1.10582 1.05934 1.72949 1.21075 0.96559 0.79946 0.96494 0.89124 1.22504 1.01546 0.99331 0.94632 1.21027 0.93131 0.88050 0.95989 1.44042 1.62720 1.13947 1.10645 1.19240 1.40855 0.85355 0.92920 0.91249 1.25082 1.00273 0.97525 0.96844 1.69997 1.46797 1.31351 1.06695 0.86234 0.79480 0.82502 0.78228 1.21393 1.20350 1.21670 1.21474 0.98002 0.91608 0.87006 1.22990 0.98053 0.95969 0.81928 0.92954 1.86407 1.76550 1.49927 1.24936 0.89334 0.91163 0.87522 0.81389 0.81623 0.76923 0.91896 0.91751 0.95732 0.92031 0.93434 0.88310 0.95244 0.77596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.58 36.00 0.31 -1.11 16 2 C 0.03 0.32 5.96 -103.88 -0.62 -0.30 16 3 C -0.11 -1.03 6.33 -39.41 -0.25 -1.28 16 4 Cl -0.05 -0.40 27.35 -51.86 -1.42 -1.81 16 5 C 0.14 1.24 10.97 -17.43 -0.19 1.05 16 6 N -0.48 -5.02 10.34 -12.88 -0.13 -5.15 16 7 C 0.14 1.48 10.70 -17.13 -0.18 1.29 16 8 C -0.17 -2.09 5.89 -104.83 -0.62 -2.70 16 9 C 0.56 8.02 7.69 -12.33 -0.09 7.93 16 10 O -0.53 -8.93 13.16 5.31 0.07 -8.86 16 11 N -0.71 -9.75 4.87 -54.71 -0.27 -10.02 16 12 C 0.16 2.74 2.11 -67.89 -0.14 2.60 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 14 C -0.14 -2.37 5.67 -26.39 -0.15 -2.52 16 15 C 0.14 2.92 6.54 -3.49 -0.02 2.90 16 16 N -0.59 -13.93 2.99 -172.06 -0.52 -14.44 16 17 C -0.25 -6.61 9.60 -15.06 -0.14 -6.75 16 18 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 19 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 20 N -0.90 -24.99 11.03 55.49 0.61 -24.38 16 21 Si 0.91 20.75 29.58 -169.99 -5.03 15.72 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 C 0.15 3.25 4.93 -3.71 -0.02 3.23 16 26 C 0.07 1.26 3.14 -26.61 -0.08 1.17 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -9.24 13.16 -35.23 -0.46 -9.71 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.66 6.78 -51.93 -0.35 0.31 16 31 H 0.11 1.39 5.94 -51.93 -0.31 1.08 16 32 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.17 1.34 6.46 -52.49 -0.34 1.00 16 34 H 0.40 4.51 6.70 -40.82 -0.27 4.24 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 39 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.10 2.42 5.92 -51.93 -0.31 2.11 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.38 4.87 9.08 45.56 0.41 5.28 16 LS Contribution 356.39 15.07 5.37 5.37 Total: -1.00 -30.30 356.39 -8.55 -38.85 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.48 Total: 8.98 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -2.30 Total: 5.46 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.30 Total: -53.99 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.39 Total: -18.57 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.42 Total: -1.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.30 -8.55 -38.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.697 kcal (2) G-P(sol) polarization free energy of solvation -30.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds