Wall clock time and date at job start Tue Mar 31 2020 22:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38514 * 120.86214 * 2 1 4 4 Cl 1.73600 * 120.36052 * 0.02562 * 3 2 1 5 5 C 1.38430 * 119.28013 * 180.02562 * 3 2 1 6 6 N 1.31945 * 121.05863 * 0.02562 * 5 3 2 7 7 C 1.31665 * 121.89867 * 359.69881 * 6 5 3 8 8 C 1.39562 * 120.59013 * 0.59009 * 7 6 5 9 9 C 1.47841 * 120.55068 * 179.70376 * 8 7 6 10 10 O 1.21559 * 120.00153 * 174.15755 * 9 8 7 11 11 N 1.34779 * 120.00328 * 354.15590 * 9 8 7 12 12 C 1.46495 * 120.00452 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.45583 * 35.02673 * 12 11 9 14 14 C 1.53042 * 109.46122 * 275.07154 * 12 11 9 15 15 C 1.53624 * 109.24142 * 178.48795 * 14 12 11 16 16 N 1.46927 * 108.54255 * 54.85614 * 15 14 12 17 17 C 1.36932 * 120.63018 * 126.36854 * 16 15 14 18 18 H 1.07999 * 120.00086 * 332.74562 * 17 16 15 19 19 C 1.38812 * 120.00147 * 152.74558 * 17 16 15 20 20 N 1.31620 * 119.99968 * 344.25485 * 19 17 16 21 21 Si 1.86802 * 120.00215 * 164.25494 * 19 17 16 22 22 H 1.48509 * 109.47130 * 270.00118 * 21 19 17 23 23 H 1.48494 * 109.47047 * 30.00111 * 21 19 17 24 24 H 1.48495 * 109.47109 * 150.00406 * 21 19 17 25 25 C 1.46925 * 118.73994 * 306.08996 * 16 15 14 26 26 C 1.53036 * 109.46409 * 154.99957 * 12 11 9 27 27 H 1.09003 * 109.49611 * 61.43530 * 26 12 11 28 28 O 1.42903 * 109.49619 * 301.34189 * 26 12 11 29 29 H 1.09006 * 109.46877 * 263.59527 * 1 2 3 30 30 H 1.08996 * 109.47282 * 23.59543 * 1 2 3 31 31 H 1.09001 * 109.47013 * 143.60136 * 1 2 3 32 32 H 1.07993 * 119.46564 * 179.97438 * 5 3 2 33 33 H 1.07996 * 119.70664 * 180.31597 * 7 6 5 34 34 H 0.97003 * 119.99625 * 0.02562 * 11 9 8 35 35 H 1.09003 * 109.49507 * 298.56135 * 14 12 11 36 36 H 1.09001 * 109.49721 * 58.62834 * 14 12 11 37 37 H 1.08999 * 109.73783 * 295.11806 * 15 14 12 38 38 H 1.09001 * 109.66467 * 174.54918 * 15 14 12 39 39 H 0.96999 * 119.99919 * 179.97438 * 20 19 17 40 40 H 1.08996 * 109.58949 * 173.64473 * 25 16 15 41 41 H 1.09000 * 109.58940 * 293.93612 * 25 16 15 42 42 H 0.96704 * 113.99693 * 180.15648 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3817 2.7106 0.0007 5 6 3.6012 1.1508 -0.0005 6 7 4.2505 0.0021 -0.0016 7 6 3.6197 -1.1536 0.0038 8 6 2.2250 -1.2015 -0.0016 9 6 1.5176 -2.4997 -0.0022 10 8 0.3068 -2.5322 0.1003 11 7 2.2152 -3.6473 -0.1164 12 6 1.5143 -4.9336 -0.1175 13 1 0.5548 -4.8239 -0.6230 14 6 1.2813 -5.3886 1.3250 15 6 0.5128 -6.7188 1.3184 16 7 1.2547 -7.6829 0.4944 17 6 1.6031 -8.9079 0.9973 18 1 1.7477 -9.0341 2.0601 19 6 1.7706 -9.9876 0.1411 20 7 1.3050 -9.9308 -1.0886 21 14 2.6569 -11.5213 0.7342 22 1 4.1098 -11.3927 0.4549 23 1 2.4460 -11.6810 2.1954 24 1 2.1196 -12.7094 0.0237 25 6 1.6101 -7.3100 -0.8816 26 6 2.3613 -5.9752 -0.8522 27 1 3.3111 -6.1037 -0.3329 28 8 2.6042 -5.5350 -2.1899 29 1 -0.3633 -0.1146 1.0213 30 1 -0.3633 0.9417 -0.4113 31 1 -0.3633 -0.8272 -0.6098 32 1 4.1582 2.0760 -0.0010 33 1 4.1867 -2.0727 0.0079 34 1 3.1815 -3.6213 -0.1978 35 1 2.2412 -5.5226 1.8237 36 1 0.6982 -4.6351 1.8544 37 1 -0.4814 -6.5676 0.8979 38 1 0.4274 -7.0981 2.3367 39 1 1.4223 -10.6851 -1.6870 40 1 2.2489 -8.0793 -1.3153 41 1 0.7037 -7.2084 -1.4784 42 1 3.1346 -6.1491 -2.7159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090337608.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:58 Heat of formation + Delta-G solvation = -53.812750 kcal Electronic energy + Delta-G solvation = -27255.433199 eV Core-core repulsion = 23261.065987 eV Total energy + Delta-G solvation = -3994.367211 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01074 -40.62310 -39.29647 -37.77530 -36.88074 -36.04803 -34.79460 -34.12838 -32.59471 -31.03788 -30.47203 -29.06901 -27.10892 -25.62793 -24.16251 -23.72802 -23.13169 -21.80362 -21.15638 -19.26592 -18.63795 -18.21670 -18.06546 -17.43966 -17.14586 -16.66503 -16.51049 -16.37145 -15.64370 -15.50508 -15.37507 -14.96466 -14.92616 -14.41105 -14.08038 -13.94971 -13.89730 -13.81508 -13.54604 -13.36253 -13.12074 -13.04726 -13.02015 -12.66778 -12.51938 -12.28311 -12.09416 -11.99462 -11.86415 -11.41189 -11.18380 -10.95248 -10.77649 -10.60182 -10.55117 -10.15030 -10.03931 -8.76579 -7.89545 -5.37246 -0.61364 -0.18408 0.85763 1.49307 1.50826 1.59520 1.67835 1.97912 2.50035 2.55197 3.08686 3.17109 3.28245 3.41685 3.46201 3.56361 3.64067 3.86288 3.90914 4.06769 4.16057 4.32553 4.40845 4.43043 4.46880 4.54091 4.63702 4.69434 4.87571 4.91808 4.96082 5.05331 5.11446 5.17888 5.29107 5.35699 5.44146 5.59979 5.64741 6.33949 6.43412 6.56686 6.82945 7.10179 7.11156 7.78596 8.30332 9.16454 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028699 B = 0.002403 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.400736 B =11647.842217 C =11941.428598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.018 3.982 3 C -0.107 4.107 4 Cl -0.034 7.034 5 C 0.145 3.855 6 N -0.487 5.487 7 C 0.150 3.850 8 C -0.189 4.189 9 C 0.562 3.438 10 O -0.559 6.559 11 N -0.696 5.696 12 C 0.172 3.828 13 H 0.061 0.939 14 C -0.123 4.123 15 C 0.141 3.859 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.073 0.927 19 C -0.049 4.049 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.281 1.281 23 H -0.270 1.270 24 H -0.299 1.299 25 C 0.154 3.846 26 C 0.092 3.908 27 H 0.068 0.932 28 O -0.574 6.574 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.199 0.801 33 H 0.188 0.812 34 H 0.411 0.589 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.011 0.989 38 H 0.067 0.933 39 H 0.251 0.749 40 H 0.075 0.925 41 H -0.005 1.005 42 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.351 22.894 1.867 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.136 4.136 4 Cl -0.005 7.005 5 C -0.012 4.012 6 N -0.196 5.196 7 C -0.008 4.008 8 C -0.195 4.195 9 C 0.349 3.651 10 O -0.439 6.439 11 N -0.347 5.347 12 C 0.067 3.933 13 H 0.079 0.921 14 C -0.163 4.163 15 C 0.015 3.985 16 N -0.330 5.330 17 C -0.392 4.392 18 H 0.091 0.909 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.798 3.202 22 H -0.208 1.208 23 H -0.194 1.194 24 H -0.225 1.225 25 C 0.027 3.973 26 C 0.031 3.969 27 H 0.086 0.914 28 O -0.381 6.381 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.215 0.785 33 H 0.204 0.796 34 H 0.248 0.752 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.093 0.907 41 H 0.013 0.987 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 5.985 23.381 2.021 24.219 hybrid contribution -0.293 -1.602 -0.297 1.655 sum 5.692 21.779 1.724 22.577 Atomic orbital electron populations 1.21098 0.88334 1.04186 1.04275 1.20500 0.98397 0.90360 0.89831 1.21956 0.94316 0.88053 1.09296 1.98384 1.77993 1.27345 1.96804 1.23479 0.89270 0.98075 0.90365 1.67961 1.39592 0.98122 1.13891 1.23421 0.89910 0.97688 0.89814 1.20774 0.95537 0.93163 1.10000 1.18163 0.86735 0.83916 0.76272 1.90742 1.14752 1.87401 1.51047 1.45774 1.11198 1.04715 1.72967 1.20706 0.95399 0.81239 0.95941 0.92100 1.22291 1.01706 0.97417 0.94922 1.21132 0.92726 0.89085 0.95529 1.44289 1.63427 1.14077 1.11189 1.19571 1.40084 0.86324 0.93221 0.90884 1.25814 1.01300 1.00314 0.97050 1.70162 1.48323 1.31943 1.07788 0.85231 0.78340 0.78729 0.77915 1.20761 1.19440 1.22547 1.21278 0.96490 0.93520 0.85991 1.22565 0.97832 0.93551 0.82988 0.91421 1.86390 1.76968 1.50244 1.24449 0.89542 0.89766 0.89764 0.78473 0.79561 0.75173 0.90557 0.90862 0.97148 0.91496 0.93947 0.90684 0.98735 0.75819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.58 71.23 0.61 -2.05 16 2 C 0.02 0.39 5.96 -19.38 -0.12 0.27 16 3 C -0.11 -1.86 6.33 22.38 0.14 -1.71 16 4 Cl -0.03 -0.50 27.35 -2.72 -0.07 -0.58 16 5 C 0.14 2.22 10.97 84.72 0.93 3.15 16 6 N -0.49 -8.83 10.34 -194.68 -2.01 -10.85 16 7 C 0.15 2.73 10.70 85.04 0.91 3.64 16 8 C -0.19 -4.23 5.89 -20.00 -0.12 -4.35 16 9 C 0.56 15.62 7.69 86.78 0.67 16.29 16 10 O -0.56 -19.11 13.16 -3.90 -0.05 -19.17 16 11 N -0.70 -18.24 4.87 -445.28 -2.17 -20.41 16 12 C 0.17 5.71 2.11 45.02 0.10 5.81 16 13 H 0.06 2.42 7.58 -2.38 -0.02 2.41 16 14 C -0.12 -4.07 5.67 30.82 0.17 -3.89 16 15 C 0.14 5.74 6.54 86.51 0.57 6.30 16 16 N -0.61 -28.96 2.99 -698.27 -2.09 -31.05 16 17 C -0.26 -13.66 9.60 84.03 0.81 -12.86 16 18 H 0.07 3.68 7.87 -2.91 -0.02 3.66 16 19 C -0.05 -2.63 4.96 84.86 0.42 -2.21 16 20 N -0.94 -53.09 11.03 21.65 0.24 -52.85 16 21 Si 0.97 42.77 29.58 68.60 2.03 44.80 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.30 -13.47 7.11 99.48 0.71 -12.77 16 25 C 0.15 7.03 4.93 86.36 0.43 7.46 16 26 C 0.09 3.17 3.14 30.67 0.10 3.27 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 O -0.57 -17.93 13.16 -148.98 -1.96 -19.90 16 29 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.08 1.51 6.78 -2.39 -0.02 1.50 16 31 H 0.08 2.24 5.94 -2.39 -0.01 2.23 16 32 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.19 2.43 6.46 -2.91 -0.02 2.41 16 34 H 0.41 8.31 6.70 -92.71 -0.62 7.69 16 35 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 39 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.07 3.78 5.92 -2.39 -0.01 3.76 16 41 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 42 H 0.39 9.69 9.08 -74.05 -0.67 9.02 16 Total: -1.00 -66.16 356.39 -0.69 -66.84 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.21 Total: 24.04 kcal Atomic # 6 Polarization: 13.49 SS G_CDS: 5.61 Total: 19.10 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -6.03 Total: -115.16 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -2.01 Total: -39.06 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -0.07 Total: -0.58 kcal Total: -66.16 -0.69 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337608.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.030 kcal (2) G-P(sol) polarization free energy of solvation -66.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds