Wall clock time and date at job start Tue Mar 31 2020 22:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38512 * 120.86211 * 2 1 4 4 Cl 1.73598 * 120.35989 * 359.97438 * 3 2 1 5 5 C 1.38421 * 119.27503 * 179.71955 * 3 2 1 6 6 N 1.31952 * 121.06456 * 0.28022 * 5 3 2 7 7 C 1.31663 * 121.89436 * 359.97438 * 6 5 3 8 8 C 1.39557 * 120.59196 * 359.97438 * 7 6 5 9 9 C 1.47844 * 120.55059 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99851 * 186.00170 * 9 8 7 11 11 N 1.34779 * 120.00331 * 6.00171 * 9 8 7 12 12 C 1.46499 * 120.00097 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.45991 * 325.00010 * 12 11 9 14 14 C 1.53045 * 109.45634 * 84.97580 * 12 11 9 15 15 C 1.53188 * 109.30988 * 181.39865 * 14 12 11 16 16 N 1.46927 * 108.76451 * 305.34207 * 15 14 12 17 17 C 1.36937 * 120.63490 * 233.63955 * 16 15 14 18 18 H 1.08001 * 119.99606 * 27.47908 * 17 16 15 19 19 C 1.38813 * 120.00664 * 207.48611 * 17 16 15 20 20 N 1.31615 * 119.99397 * 17.31231 * 19 17 16 21 21 Si 1.86793 * 120.00057 * 197.32045 * 19 17 16 22 22 H 1.48498 * 109.47418 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47123 * 119.99886 * 21 19 17 24 24 H 1.48503 * 109.46766 * 239.99358 * 21 19 17 25 25 C 1.46927 * 118.73902 * 53.61793 * 16 15 14 26 26 C 1.53044 * 109.45541 * 205.02712 * 12 11 9 27 27 H 1.08996 * 109.49673 * 58.63456 * 26 12 11 28 28 O 1.42898 * 109.49605 * 298.56607 * 26 12 11 29 29 H 1.08995 * 109.47308 * 95.55417 * 1 2 3 30 30 H 1.09001 * 109.47006 * 215.56290 * 1 2 3 31 31 H 1.09000 * 109.47109 * 335.55845 * 1 2 3 32 32 H 1.08004 * 119.47218 * 180.25460 * 5 3 2 33 33 H 1.07993 * 119.70095 * 179.97438 * 7 6 5 34 34 H 0.97001 * 119.99649 * 0.02562 * 11 9 8 35 35 H 1.09004 * 109.49767 * 301.33092 * 14 12 11 36 36 H 1.08998 * 109.49876 * 61.42961 * 14 12 11 37 37 H 1.08996 * 109.58794 * 185.56448 * 15 14 12 38 38 H 1.08997 * 109.71771 * 65.19657 * 15 14 12 39 39 H 0.97004 * 119.99917 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.58567 * 186.60433 * 25 16 15 41 41 H 1.09004 * 109.70351 * 66.24800 * 25 16 15 42 42 H 0.96700 * 113.99261 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2176 1.1890 0.0000 4 17 1.3818 2.7106 -0.0007 5 6 3.6012 1.1507 0.0059 6 7 4.2506 0.0020 0.0060 7 6 3.6197 -1.1537 0.0010 8 6 2.2250 -1.2015 -0.0041 9 6 1.5176 -2.4998 -0.0091 10 8 0.3079 -2.5323 -0.1235 11 7 2.2140 -3.6472 0.1132 12 6 1.5129 -4.9336 0.1088 13 1 0.5483 -4.8231 0.6041 14 6 1.2952 -5.3905 -1.3355 15 6 0.5312 -6.7183 -1.3370 16 7 1.2595 -7.6835 -0.5023 17 6 1.6140 -8.9089 -1.0003 18 1 1.7777 -9.0341 -2.0604 19 6 1.7626 -9.9902 -0.1426 20 7 1.2476 -9.9456 1.0678 21 14 2.6938 -11.5082 -0.7062 22 1 3.1698 -11.3085 -2.0986 23 1 3.8578 -11.7352 0.1876 24 1 1.7935 -12.6882 -0.6558 25 6 1.6007 -7.3088 0.8768 26 6 2.3524 -5.9742 0.8536 27 1 2.5275 -5.6368 1.8751 28 8 3.6044 -6.1434 0.1859 29 1 -0.3633 -0.0995 -1.0228 30 1 -0.3633 -0.8360 0.5977 31 1 -0.3633 0.9356 0.4252 32 1 4.1584 2.0759 0.0101 33 1 4.1868 -2.0728 0.0008 34 1 3.1793 -3.6212 0.2049 35 1 0.7172 -4.6379 -1.8720 36 1 2.2603 -5.5252 -1.8239 37 1 0.4598 -7.0976 -2.3564 38 1 -0.4695 -6.5673 -0.9324 39 1 1.3518 -10.7011 1.6673 40 1 2.2349 -8.0777 1.3181 41 1 0.6892 -7.2047 1.4655 42 1 4.1887 -6.7905 0.6042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090337610.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:04 Heat of formation + Delta-G solvation = -30.258622 kcal Electronic energy + Delta-G solvation = -27353.081112 eV Core-core repulsion = 23359.735284 eV Total energy + Delta-G solvation = -3993.345828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.11053 -39.48231 -37.97071 -37.07547 -34.87011 -34.74073 -33.87627 -32.49406 -31.45348 -29.47005 -29.13535 -28.13548 -25.49197 -24.50576 -22.83378 -22.43331 -21.81335 -20.59810 -19.54412 -18.03540 -17.42465 -17.17986 -16.66607 -15.99541 -15.65111 -15.51570 -15.41436 -14.97090 -14.35519 -14.16726 -13.89408 -13.77092 -13.36615 -13.29590 -13.12052 -12.99798 -12.82820 -12.39297 -12.32204 -12.16132 -12.05679 -11.59593 -11.32080 -11.18260 -10.84981 -10.62600 -10.54333 -10.34907 -10.17478 -10.09078 -9.91111 -9.76757 -9.58901 -9.39292 -9.23920 -8.80779 -8.54815 -6.73861 -5.85966 -3.26354 0.18740 0.60948 1.57650 2.63677 3.09454 3.32704 3.40787 3.41795 3.44361 3.88296 4.17031 4.25098 4.43662 4.44506 4.67052 4.74766 4.93676 5.17068 5.24381 5.33004 5.35605 5.39589 5.49953 5.50669 5.73150 5.86513 5.88824 5.97393 6.07255 6.15619 6.23607 6.39319 6.48108 6.72849 6.75425 6.91764 7.11135 7.31845 7.37837 7.54262 7.74559 8.14437 8.20090 8.37952 9.13421 9.76483 10.32742 11.22914 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031008 B = 0.002417 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.772241 B =11580.258189 C =12047.358154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.028 3.972 3 C -0.106 4.106 4 Cl -0.047 7.047 5 C 0.136 3.864 6 N -0.476 5.476 7 C 0.143 3.857 8 C -0.177 4.177 9 C 0.559 3.441 10 O -0.528 6.528 11 N -0.709 5.709 12 C 0.163 3.837 13 H 0.093 0.907 14 C -0.136 4.136 15 C 0.148 3.852 16 N -0.583 5.583 17 C -0.242 4.242 18 H 0.066 0.934 19 C -0.002 4.002 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.145 3.855 26 C 0.072 3.928 27 H 0.044 0.956 28 O -0.560 6.560 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.401 0.599 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.057 0.943 38 H 0.020 0.980 39 H 0.253 0.747 40 H 0.097 0.903 41 H 0.028 0.972 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.810 21.780 0.626 22.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.019 3.981 3 C -0.135 4.135 4 Cl -0.018 7.018 5 C -0.021 4.021 6 N -0.185 5.185 7 C -0.016 4.016 8 C -0.182 4.182 9 C 0.344 3.656 10 O -0.406 6.406 11 N -0.359 5.359 12 C 0.060 3.940 13 H 0.111 0.889 14 C -0.177 4.177 15 C 0.021 3.979 16 N -0.305 5.305 17 C -0.372 4.372 18 H 0.084 0.916 19 C -0.199 4.199 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.018 3.982 26 C 0.011 3.989 27 H 0.062 0.938 28 O -0.366 6.366 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.088 0.912 32 H 0.186 0.814 33 H 0.185 0.815 34 H 0.236 0.764 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.046 0.954 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.510 22.170 0.256 22.448 hybrid contribution 0.297 -1.065 0.241 1.131 sum 3.807 21.106 0.497 21.452 Atomic orbital electron populations 1.21200 0.88033 1.04452 1.04749 1.20396 0.98336 0.89739 0.89604 1.21935 0.93983 0.88064 1.09494 1.98377 1.78139 1.28403 1.96882 1.22989 0.89373 0.97375 0.92375 1.67872 1.39489 0.97784 1.13332 1.23177 0.90612 0.96798 0.90980 1.20987 0.94901 0.94423 1.07897 1.17880 0.87062 0.83277 0.77360 1.90747 1.13334 1.86947 1.49594 1.46162 1.11129 1.05797 1.72829 1.21092 0.95286 0.79608 0.98046 0.88877 1.22311 1.01775 0.98589 0.94981 1.20889 0.92917 0.88367 0.95716 1.43893 1.63308 1.13465 1.09838 1.19226 1.39618 0.85160 0.93148 0.91579 1.25013 1.00459 0.97347 0.97123 1.70024 1.46011 1.31215 1.07987 0.86213 0.79476 0.82918 0.78131 1.20265 1.21614 1.21807 1.21446 0.97613 0.91910 0.87258 1.22848 0.85481 0.97748 0.92808 0.93783 1.86334 1.28027 1.64753 1.57477 0.89319 0.87550 0.91161 0.81382 0.81479 0.76352 0.92807 0.91089 0.92401 0.96188 0.93673 0.88480 0.95416 0.77657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.58 36.01 0.31 -1.06 16 2 C 0.03 0.31 5.96 -103.87 -0.62 -0.31 16 3 C -0.11 -1.01 6.33 -39.41 -0.25 -1.26 16 4 Cl -0.05 -0.39 27.37 -51.86 -1.42 -1.81 16 5 C 0.14 1.23 10.97 -17.43 -0.19 1.04 16 6 N -0.48 -4.97 10.34 -12.88 -0.13 -5.11 16 7 C 0.14 1.47 10.70 -17.13 -0.18 1.28 16 8 C -0.18 -2.06 5.89 -104.83 -0.62 -2.67 16 9 C 0.56 7.74 7.69 -12.33 -0.09 7.65 16 10 O -0.53 -8.66 13.16 5.32 0.07 -8.59 16 11 N -0.71 -9.60 5.00 -54.71 -0.27 -9.88 16 12 C 0.16 2.69 2.20 -67.88 -0.15 2.54 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 C -0.14 -2.44 5.51 -26.61 -0.15 -2.59 16 15 C 0.15 3.08 6.52 -3.71 -0.02 3.06 16 16 N -0.58 -13.88 2.94 -172.32 -0.51 -14.38 16 17 C -0.24 -6.38 9.59 -15.06 -0.14 -6.52 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 -0.04 4.91 -17.43 -0.09 -0.13 16 20 N -0.91 -25.15 11.17 55.49 0.62 -24.53 16 21 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.14 3.16 4.95 -3.71 -0.02 3.14 16 26 C 0.07 1.23 3.38 -26.61 -0.09 1.14 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 O -0.56 -9.23 12.08 -35.23 -0.43 -9.65 16 29 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.11 1.32 5.92 -51.93 -0.31 1.01 16 31 H 0.07 0.64 6.81 -51.93 -0.35 0.28 16 32 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.17 1.39 6.47 -52.49 -0.34 1.05 16 34 H 0.40 4.66 6.36 -40.82 -0.26 4.40 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.35 7.61 -51.93 -0.40 0.95 16 37 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.10 2.34 6.02 -51.93 -0.31 2.03 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.38 5.38 9.08 45.56 0.41 5.80 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -30.10 354.88 -8.50 -38.60 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.44 Total: 8.72 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -2.30 Total: 5.30 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.29 Total: -53.90 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.36 Total: -18.24 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.42 Total: -1.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.10 -8.50 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337610.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.341 kcal (2) G-P(sol) polarization free energy of solvation -30.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds