Wall clock time and date at job start Tue Mar 31 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48499 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47078 * 300.00698 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00456 * 3 2 1 7 7 C 1.38815 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00580 * 163.07536 * 7 2 1 9 9 N 1.36940 * 119.99740 * 343.07461 * 7 2 1 10 10 C 1.46926 * 120.62965 * 151.83076 * 9 7 2 11 11 C 1.53197 * 108.77163 * 126.37346 * 10 9 7 12 12 C 1.53038 * 109.31425 * 54.63943 * 11 10 9 13 13 H 1.09004 * 109.46137 * 58.63640 * 12 11 10 14 14 N 1.46497 * 109.46065 * 178.61341 * 12 11 10 15 15 C 1.34773 * 120.00139 * 275.02532 * 14 12 11 16 16 O 1.21284 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00227 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.38662 * 120.79539 * 264.97784 * 18 17 15 20 20 C 1.38183 * 119.17609 * 180.02562 * 19 18 17 21 21 N 1.31876 * 120.79630 * 359.97438 * 20 19 18 22 22 C 1.31845 * 121.74010 * 359.97438 * 21 20 19 23 23 C 1.38343 * 120.74384 * 0.02788 * 22 21 20 24 24 Cl 1.73601 * 120.43204 * 179.69841 * 23 22 21 25 25 C 1.53045 * 109.52399 * 298.62644 * 12 11 10 26 26 H 1.09001 * 109.49606 * 301.41841 * 25 12 11 27 27 O 1.42895 * 109.49574 * 181.32701 * 25 12 11 28 28 C 1.46926 * 120.63329 * 331.81543 * 9 7 2 29 29 H 0.97000 * 120.00356 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58948 * 6.58891 * 10 9 7 31 31 H 1.08995 * 109.58814 * 246.15691 * 10 9 7 32 32 H 1.09002 * 109.49710 * 294.68133 * 11 10 9 33 33 H 1.09000 * 109.49412 * 174.58827 * 11 10 9 34 34 H 0.97005 * 120.00155 * 95.01926 * 14 12 11 35 35 H 1.09001 * 109.47184 * 60.00240 * 17 15 14 36 36 H 1.08996 * 109.47314 * 300.00314 * 17 15 14 37 37 H 1.08003 * 120.40736 * 0.04408 * 19 18 17 38 38 H 1.07999 * 119.60210 * 179.97438 * 20 19 18 39 39 H 1.08009 * 119.63086 * 180.02562 * 22 21 20 40 40 H 0.96704 * 114.00024 * 180.02562 * 27 25 12 41 41 H 1.09004 * 109.58353 * 353.41687 * 28 9 7 42 42 H 1.09001 * 109.58966 * 113.83541 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3700 -2.3625 0.3442 10 6 1.8139 -3.6528 -0.2008 11 6 2.0683 -4.6177 0.9616 12 6 0.8133 -4.7020 1.8333 13 1 -0.0272 -5.0419 1.2281 14 7 1.0417 -5.6492 2.9273 15 6 0.8378 -6.9670 2.7313 16 8 0.4648 -7.3686 1.6493 17 6 1.0733 -7.9415 3.8564 18 6 0.7760 -9.3400 3.3802 19 6 -0.4686 -9.9129 3.5931 20 6 -0.7047 -11.1977 3.1427 21 7 0.2363 -11.8774 2.5169 22 6 1.4310 -11.3654 2.2955 23 6 1.7408 -10.0848 2.7174 24 17 3.3188 -9.4215 2.4286 25 6 0.4989 -3.3206 2.4123 26 1 1.3490 -2.9693 2.9972 27 8 -0.6549 -3.4063 3.2508 28 6 0.2264 -2.3411 1.2664 29 1 -0.4851 0.8400 0.0004 30 1 2.7343 -3.5128 -0.7676 31 1 1.0401 -4.0603 -0.8513 32 1 2.9034 -4.2540 1.5602 33 1 2.3052 -5.6063 0.5684 34 1 1.3397 -5.3281 3.7927 35 1 0.4193 -7.6955 4.6930 36 1 2.1129 -7.8808 4.1780 37 1 -1.2440 -9.3616 4.1043 38 1 -1.6715 -11.6508 3.3052 39 1 2.1762 -11.9523 1.7791 40 1 -0.9127 -2.5651 3.6523 41 1 0.0994 -1.3356 1.6676 42 1 -0.6769 -2.6416 0.7355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090568303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:58 Heat of formation + Delta-G solvation = -36.853975 kcal Electronic energy + Delta-G solvation = -27139.660233 eV Core-core repulsion = 23146.028409 eV Total energy + Delta-G solvation = -3993.631824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.73207 -39.62141 -37.92909 -36.85914 -35.31218 -34.44527 -34.03657 -32.21491 -31.31477 -29.92715 -28.99411 -28.33085 -25.15737 -23.83622 -23.15421 -22.36570 -21.71543 -20.27684 -19.48854 -17.47810 -17.17664 -17.06526 -16.70034 -16.63101 -16.30684 -15.75362 -14.97199 -14.83322 -14.54454 -14.25729 -13.95367 -13.78545 -13.56582 -13.36922 -13.11908 -12.92675 -12.57764 -12.24828 -12.22818 -12.09511 -11.79847 -11.70635 -11.44958 -11.25458 -10.88200 -10.80637 -10.44367 -10.22480 -10.13655 -10.05360 -9.86598 -9.79948 -9.53869 -9.36384 -9.19212 -8.79826 -8.57149 -6.81087 -5.90385 -3.34371 0.66844 0.81246 1.80077 2.73034 3.18641 3.29611 3.38376 3.40365 3.52476 4.13312 4.14123 4.32581 4.37844 4.53658 4.62512 4.83317 4.95280 5.02309 5.21623 5.26627 5.30385 5.36014 5.42319 5.52384 5.56278 5.79137 5.87691 5.97120 6.05233 6.18520 6.20801 6.40955 6.43849 6.67819 6.79759 6.87864 7.08042 7.41216 7.55264 7.65408 7.70242 8.04350 8.32445 8.35588 9.08051 9.70665 10.27008 11.18071 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.002582 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.900442 B =10843.171133 C =11411.713816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.164 3.836 13 H 0.087 0.913 14 N -0.714 5.714 15 C 0.518 3.482 16 O -0.534 6.534 17 C -0.113 4.113 18 C -0.008 4.008 19 C -0.148 4.148 20 C 0.102 3.898 21 N -0.473 5.473 22 C 0.113 3.887 23 C -0.075 4.075 24 Cl -0.050 7.050 25 C 0.072 3.928 26 H 0.052 0.948 27 O -0.573 6.573 28 C 0.149 3.851 29 H 0.255 0.745 30 H 0.060 0.940 31 H 0.024 0.976 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.397 0.603 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.376 0.624 41 H 0.094 0.906 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -17.983 12.109 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.179 4.179 12 C 0.060 3.940 13 H 0.105 0.895 14 N -0.363 5.363 15 C 0.302 3.698 16 O -0.410 6.410 17 C -0.153 4.153 18 C -0.017 4.017 19 C -0.168 4.168 20 C -0.055 4.055 21 N -0.182 5.182 22 C -0.044 4.044 23 C -0.104 4.104 24 Cl -0.021 7.021 25 C 0.011 3.989 26 H 0.070 0.930 27 O -0.378 6.378 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.223 0.777 41 H 0.112 0.888 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.607 -19.534 10.808 22.382 hybrid contribution 0.806 2.665 0.843 2.909 sum 2.413 -16.869 11.651 20.643 Atomic orbital electron populations 1.70032 1.05272 1.25607 1.53663 1.25094 0.95327 0.98573 1.00629 0.86208 0.79398 0.83733 0.77357 1.20175 1.21599 1.21513 1.19247 0.92716 0.84534 1.41981 0.91325 1.44019 1.35693 1.01961 1.49639 1.20941 0.98253 0.86306 0.92699 1.22410 0.96635 1.00235 0.98636 1.20991 0.98664 0.86808 0.87545 0.89459 1.46059 1.68413 1.06098 1.15740 1.20078 0.77753 0.82965 0.88956 1.90740 1.45870 1.78197 1.26197 1.20783 1.05443 0.90196 0.98843 1.19626 0.92800 0.94609 0.94670 1.22062 0.96289 0.96809 1.01671 1.22833 0.98341 0.91337 0.92958 1.67797 1.00760 1.36647 1.12967 1.22744 0.94323 0.91135 0.96243 1.21967 0.89071 0.96115 1.03275 1.98388 1.23431 1.85672 1.94609 1.22982 0.87047 0.95486 0.93356 0.93028 1.86402 1.48436 1.36855 1.66124 1.21410 0.89847 0.98086 0.88510 0.93518 0.92106 0.95855 0.92036 0.91807 0.76942 0.87105 0.87219 0.83846 0.81957 0.81864 0.77719 0.88837 0.95258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 11.20 55.49 0.62 -24.62 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.89 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16 10 C 0.14 3.03 6.52 -3.71 -0.02 3.01 16 11 C -0.14 -2.47 5.65 -26.61 -0.15 -2.62 16 12 C 0.16 2.86 2.12 -67.89 -0.14 2.71 16 13 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 14 N -0.71 -9.93 4.92 -53.77 -0.26 -10.19 16 15 C 0.52 7.29 7.79 -10.99 -0.09 7.20 16 16 O -0.53 -9.72 15.70 5.55 0.09 -9.64 16 17 C -0.11 -1.10 5.42 -29.04 -0.16 -1.26 16 18 C -0.01 -0.09 4.41 -104.28 -0.46 -0.55 16 19 C -0.15 -1.41 9.80 -39.45 -0.39 -1.79 16 20 C 0.10 0.96 11.18 -17.55 -0.20 0.77 16 21 N -0.47 -5.31 10.36 -13.23 -0.14 -5.45 16 22 C 0.11 1.22 10.99 -17.51 -0.19 1.03 16 23 C -0.08 -0.85 6.34 -39.36 -0.25 -1.10 16 24 Cl -0.05 -0.54 27.58 -51.86 -1.43 -1.97 16 25 C 0.07 1.29 3.14 -26.61 -0.08 1.21 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 O -0.57 -9.30 13.16 -35.23 -0.46 -9.76 16 28 C 0.15 3.36 4.93 -3.71 -0.02 3.35 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.40 4.47 8.60 -40.82 -0.35 4.12 16 35 H 0.11 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.11 0.91 7.24 -51.93 -0.38 0.54 16 37 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 40 H 0.38 4.86 9.08 45.56 0.41 5.27 16 41 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -32.89 365.24 -8.79 -41.68 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.78 Total: 8.29 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.38 Total: 5.05 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.30 Total: -55.01 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.38 Total: -19.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.97 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.89 -8.79 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090568303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.822 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds