Wall clock time and date at job start Tue Mar 31 2020 22:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48499 * 109.47314 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47078 * 300.00698 * 3 2 1 6 6 H 1.48500 * 109.46879 * 60.00456 * 3 2 1 7 7 C 1.38815 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00580 * 163.07536 * 7 2 1 9 9 N 1.36940 * 119.99740 * 343.07461 * 7 2 1 10 10 C 1.46926 * 120.62965 * 151.83076 * 9 7 2 11 11 C 1.53197 * 108.77163 * 126.37346 * 10 9 7 12 12 C 1.53038 * 109.31425 * 54.63943 * 11 10 9 13 13 H 1.09004 * 109.46137 * 58.63640 * 12 11 10 14 14 N 1.46497 * 109.46065 * 178.61341 * 12 11 10 15 15 C 1.34773 * 120.00139 * 275.02532 * 14 12 11 16 16 O 1.21284 * 120.00042 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00227 * 179.97438 * 15 14 12 18 18 C 1.50697 * 109.47152 * 180.02562 * 17 15 14 19 19 C 1.38662 * 120.79539 * 264.97784 * 18 17 15 20 20 C 1.38183 * 119.17609 * 180.02562 * 19 18 17 21 21 N 1.31876 * 120.79630 * 359.97438 * 20 19 18 22 22 C 1.31845 * 121.74010 * 359.97438 * 21 20 19 23 23 C 1.38343 * 120.74384 * 0.02788 * 22 21 20 24 24 Cl 1.73601 * 120.43204 * 179.69841 * 23 22 21 25 25 C 1.53045 * 109.52399 * 298.62644 * 12 11 10 26 26 H 1.09001 * 109.49606 * 301.41841 * 25 12 11 27 27 O 1.42895 * 109.49574 * 181.32701 * 25 12 11 28 28 C 1.46926 * 120.63329 * 331.81543 * 9 7 2 29 29 H 0.97000 * 120.00356 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.58948 * 6.58891 * 10 9 7 31 31 H 1.08995 * 109.58814 * 246.15691 * 10 9 7 32 32 H 1.09002 * 109.49710 * 294.68133 * 11 10 9 33 33 H 1.09000 * 109.49412 * 174.58827 * 11 10 9 34 34 H 0.97005 * 120.00155 * 95.01926 * 14 12 11 35 35 H 1.09001 * 109.47184 * 60.00240 * 17 15 14 36 36 H 1.08996 * 109.47314 * 300.00314 * 17 15 14 37 37 H 1.08003 * 120.40736 * 0.04408 * 19 18 17 38 38 H 1.07999 * 119.60210 * 179.97438 * 20 19 18 39 39 H 1.08009 * 119.63086 * 180.02562 * 22 21 20 40 40 H 0.96704 * 114.00024 * 180.02562 * 27 25 12 41 41 H 1.09004 * 109.58353 * 353.41687 * 28 9 7 42 42 H 1.09001 * 109.58966 * 113.83541 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3700 -2.3625 0.3442 10 6 1.8139 -3.6528 -0.2008 11 6 2.0683 -4.6177 0.9616 12 6 0.8133 -4.7020 1.8333 13 1 -0.0272 -5.0419 1.2281 14 7 1.0417 -5.6492 2.9273 15 6 0.8378 -6.9670 2.7313 16 8 0.4648 -7.3686 1.6493 17 6 1.0733 -7.9415 3.8564 18 6 0.7760 -9.3400 3.3802 19 6 -0.4686 -9.9129 3.5931 20 6 -0.7047 -11.1977 3.1427 21 7 0.2363 -11.8774 2.5169 22 6 1.4310 -11.3654 2.2955 23 6 1.7408 -10.0848 2.7174 24 17 3.3188 -9.4215 2.4286 25 6 0.4989 -3.3206 2.4123 26 1 1.3490 -2.9693 2.9972 27 8 -0.6549 -3.4063 3.2508 28 6 0.2264 -2.3411 1.2664 29 1 -0.4851 0.8400 0.0004 30 1 2.7343 -3.5128 -0.7676 31 1 1.0401 -4.0603 -0.8513 32 1 2.9034 -4.2540 1.5602 33 1 2.3052 -5.6063 0.5684 34 1 1.3397 -5.3281 3.7927 35 1 0.4193 -7.6955 4.6930 36 1 2.1129 -7.8808 4.1780 37 1 -1.2440 -9.3616 4.1043 38 1 -1.6715 -11.6508 3.3052 39 1 2.1762 -11.9523 1.7791 40 1 -0.9127 -2.5651 3.6523 41 1 0.0994 -1.3356 1.6676 42 1 -0.6769 -2.6416 0.7355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090568303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:58 Heat of formation + Delta-G solvation = -61.253225 kcal Electronic energy + Delta-G solvation = -27140.718264 eV Core-core repulsion = 23146.028409 eV Total energy + Delta-G solvation = -3994.689855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.59253 -40.78015 -39.36447 -37.66482 -36.88873 -35.83196 -34.90843 -33.94647 -32.04505 -31.47368 -30.57701 -29.43450 -26.92391 -24.58142 -24.42488 -23.77552 -23.16020 -21.47119 -21.04609 -19.01358 -18.12566 -18.10693 -17.94259 -17.87992 -17.31842 -16.91214 -16.56212 -16.02568 -15.69005 -15.56702 -15.23094 -15.07061 -14.93668 -14.69478 -14.42613 -13.93984 -13.84176 -13.67564 -13.41161 -13.34535 -13.06429 -13.02482 -12.69888 -12.62405 -12.53190 -12.26179 -12.09297 -12.00014 -11.89323 -11.41099 -11.12207 -10.93783 -10.62462 -10.62015 -10.52056 -10.03813 -9.95384 -8.77324 -7.92110 -5.39833 -0.08075 0.05011 1.00525 1.46594 1.49573 1.59836 1.65313 2.15059 2.48516 2.69460 3.11220 3.25971 3.35997 3.46308 3.62443 3.64451 3.83402 3.91798 3.97191 4.06214 4.21628 4.30189 4.39540 4.41107 4.45196 4.53020 4.63566 4.70022 4.78715 4.88915 4.94198 5.02879 5.07162 5.15009 5.31600 5.48996 5.51611 5.55652 5.62961 6.32253 6.58327 6.81362 6.82712 7.09064 7.28292 7.76020 8.29130 9.14642 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.002582 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.900442 B =10843.171133 C =11411.713816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.296 1.296 6 H -0.286 1.286 7 C -0.265 4.265 8 H 0.072 0.928 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.122 4.122 12 C 0.173 3.827 13 H 0.053 0.947 14 N -0.703 5.703 15 C 0.517 3.483 16 O -0.578 6.578 17 C -0.102 4.102 18 C -0.025 4.025 19 C -0.149 4.149 20 C 0.096 3.904 21 N -0.494 5.494 22 C 0.102 3.898 23 C -0.089 4.089 24 Cl -0.054 7.054 25 C 0.094 3.906 26 H 0.068 0.932 27 O -0.572 6.572 28 C 0.157 3.843 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.006 0.994 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.414 0.586 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.169 0.831 38 H 0.191 0.809 39 H 0.176 0.824 40 H 0.392 0.608 41 H 0.071 0.929 42 H -0.007 1.007 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -18.479 14.304 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.223 1.223 6 H -0.212 1.212 7 C -0.395 4.395 8 H 0.089 0.911 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.162 4.162 12 C 0.068 3.932 13 H 0.072 0.928 14 N -0.354 5.354 15 C 0.304 3.696 16 O -0.458 6.458 17 C -0.141 4.141 18 C -0.034 4.034 19 C -0.169 4.169 20 C -0.060 4.060 21 N -0.203 5.203 22 C -0.055 4.055 23 C -0.118 4.118 24 Cl -0.025 7.025 25 C 0.033 3.967 26 H 0.085 0.915 27 O -0.379 6.379 28 C 0.030 3.970 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.024 0.976 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.251 0.749 35 H 0.164 0.836 36 H 0.145 0.855 37 H 0.187 0.813 38 H 0.208 0.792 39 H 0.193 0.807 40 H 0.241 0.759 41 H 0.089 0.911 42 H 0.011 0.989 Dipole moment (debyes) X Y Z Total from point charges 2.406 -20.044 13.052 24.040 hybrid contribution 0.486 2.762 0.110 2.806 sum 2.892 -17.283 13.162 21.915 Atomic orbital electron populations 1.70187 1.06710 1.26049 1.55068 1.25844 0.96038 1.01605 1.00825 0.85181 0.78664 0.79597 0.76819 1.18988 1.22293 1.21215 1.19571 0.93020 0.85508 1.41412 0.91068 1.44264 1.35764 1.02467 1.50425 1.21029 0.97685 0.85814 0.93926 1.22184 0.97196 0.99312 0.97513 1.20580 0.97220 0.87221 0.88225 0.92846 1.45827 1.68325 1.05753 1.15506 1.20793 0.76300 0.83106 0.89404 1.90731 1.47780 1.78848 1.28402 1.20795 1.07398 0.88203 0.97752 1.19887 0.93305 0.95137 0.95029 1.22404 0.96333 0.96918 1.01215 1.23371 0.99053 0.91541 0.92032 1.67832 1.01256 1.37432 1.13771 1.22994 0.94699 0.91399 0.96450 1.22114 0.89236 0.96527 1.03906 1.98379 1.23697 1.85709 1.94712 1.22524 0.88039 0.94410 0.91769 0.91459 1.86380 1.47807 1.38159 1.65507 1.21230 0.88233 0.98115 0.89465 0.93893 0.91700 0.97601 0.90659 0.91410 0.74910 0.83626 0.85475 0.81335 0.79180 0.80685 0.75850 0.91107 0.98881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.48 11.20 21.65 0.24 -53.24 16 2 C -0.05 -2.55 4.92 84.86 0.42 -2.13 16 3 Si 0.97 43.01 29.59 68.60 2.03 45.04 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 6 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.27 -14.06 9.58 84.03 0.81 -13.25 16 8 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 9 N -0.60 -29.58 2.99 -699.10 -2.09 -31.68 16 10 C 0.14 5.99 6.52 86.36 0.56 6.55 16 11 C -0.12 -4.22 5.65 30.67 0.17 -4.05 16 12 C 0.17 5.88 2.12 45.02 0.10 5.98 16 13 H 0.05 2.22 7.58 -2.38 -0.02 2.20 16 14 N -0.70 -17.92 4.92 -442.41 -2.18 -20.10 16 15 C 0.52 13.49 7.79 87.66 0.68 14.17 16 16 O -0.58 -20.65 15.70 -3.04 -0.05 -20.70 16 17 C -0.10 -1.68 5.42 29.10 0.16 -1.52 16 18 C -0.02 -0.48 4.41 -19.65 -0.09 -0.57 16 19 C -0.15 -2.45 9.80 22.36 0.22 -2.23 16 20 C 0.10 1.63 11.18 84.67 0.95 2.58 16 21 N -0.49 -10.55 10.36 -195.76 -2.03 -12.58 16 22 C 0.10 2.11 10.99 84.72 0.93 3.04 16 23 C -0.09 -1.89 6.34 22.41 0.14 -1.75 16 24 Cl -0.05 -1.11 27.58 -2.72 -0.08 -1.19 16 25 C 0.09 3.26 3.14 30.67 0.10 3.36 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 27 O -0.57 -17.59 13.16 -148.98 -1.96 -19.55 16 28 C 0.16 7.23 4.93 86.36 0.43 7.66 16 29 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 30 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 31 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.41 7.85 8.60 -92.70 -0.80 7.06 16 35 H 0.15 1.39 8.07 -2.39 -0.02 1.37 16 36 H 0.13 1.68 7.24 -2.39 -0.02 1.66 16 37 H 0.17 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.19 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 40 H 0.39 9.44 9.08 -74.05 -0.67 8.77 16 41 H 0.07 3.58 6.06 -2.39 -0.01 3.57 16 42 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 Total: -1.00 -72.72 365.24 -0.94 -73.66 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -0.40 Total: 22.49 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 5.57 Total: 17.84 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -6.05 Total: -117.59 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -2.01 Total: -40.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -0.08 Total: -1.19 kcal Total: -72.72 -0.94 -73.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090568303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.402 kcal (2) G-P(sol) polarization free energy of solvation -72.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds