Wall clock time and date at job start Tue Mar 31 2020 22:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 119.99879 * 2 1 4 4 H 1.48498 * 109.47459 * 272.90465 * 3 2 1 5 5 H 1.48506 * 109.47229 * 32.90546 * 3 2 1 6 6 H 1.48505 * 109.47027 * 152.90426 * 3 2 1 7 7 C 1.38814 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00084 * 339.36624 * 7 2 1 9 9 N 1.36940 * 119.99983 * 159.35608 * 7 2 1 10 10 C 1.46924 * 120.63097 * 332.60834 * 9 7 2 11 11 C 1.53160 * 108.76946 * 233.62506 * 10 9 7 12 12 C 1.53038 * 109.32657 * 305.35892 * 11 10 9 13 13 H 1.09004 * 109.45613 * 181.38554 * 12 11 10 14 14 N 1.46499 * 109.45880 * 301.34891 * 12 11 10 15 15 C 1.34769 * 120.00701 * 275.03421 * 14 12 11 16 16 O 1.21288 * 119.99817 * 359.97438 * 15 14 12 17 17 C 1.50697 * 120.00109 * 180.02562 * 15 14 12 18 18 C 1.50710 * 109.46932 * 179.97438 * 17 15 14 19 19 C 1.38647 * 120.79417 * 100.00059 * 18 17 15 20 20 C 1.38188 * 119.17695 * 179.74804 * 19 18 17 21 21 N 1.31882 * 120.79473 * 0.24874 * 20 19 18 22 22 C 1.31851 * 121.73633 * 0.02562 * 21 20 19 23 23 C 1.38350 * 120.74581 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.43314 * 180.02562 * 23 22 21 25 25 C 1.53037 * 109.52989 * 61.36963 * 12 11 10 26 26 H 1.08995 * 109.49838 * 58.62431 * 25 12 11 27 27 O 1.42900 * 109.49791 * 178.69002 * 25 12 11 28 28 C 1.46920 * 120.63104 * 152.62292 * 9 7 2 29 29 H 0.96997 * 120.00434 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58924 * 353.41598 * 10 9 7 31 31 H 1.08996 * 109.58986 * 113.69342 * 10 9 7 32 32 H 1.09002 * 109.48131 * 185.40455 * 11 10 9 33 33 H 1.09007 * 109.50076 * 65.31746 * 11 10 9 34 34 H 0.97003 * 119.99461 * 95.02921 * 14 12 11 35 35 H 1.08998 * 109.47220 * 59.99768 * 17 15 14 36 36 H 1.08997 * 109.47248 * 299.99004 * 17 15 14 37 37 H 1.07995 * 120.41212 * 0.02562 * 19 18 17 38 38 H 1.08000 * 119.60541 * 180.27068 * 20 19 18 39 39 H 1.07997 * 119.62664 * 180.02562 * 22 21 20 40 40 H 0.96699 * 113.99775 * 179.97438 * 27 25 12 41 41 H 1.08997 * 109.58501 * 6.58901 * 28 9 7 42 42 H 1.09003 * 109.70659 * 246.23470 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4362 2.0820 -1.3982 5 1 1.4796 2.6342 0.7606 6 1 3.5771 1.4232 0.6377 7 6 2.0102 -1.2022 -0.0005 8 1 1.5222 -2.1076 0.3286 9 7 3.3137 -1.2400 -0.4187 10 6 3.8174 -0.2585 -1.3890 11 6 4.4615 -1.0080 -2.5590 12 6 5.5282 -1.9649 -2.0218 13 1 6.0052 -2.4815 -2.8547 14 7 6.5357 -1.2047 -1.2779 15 6 7.5644 -0.6295 -1.9316 16 8 7.6564 -0.7416 -3.1357 17 6 8.6009 0.1520 -1.1662 18 6 9.6349 0.6867 -2.1234 19 6 9.5886 2.0034 -2.5554 20 6 10.5568 2.4601 -3.4293 21 7 11.5135 1.6588 -3.8558 22 6 11.5865 0.3998 -3.4712 23 6 10.6526 -0.1283 -2.5977 24 17 10.7569 -1.7869 -2.0961 25 6 4.8745 -2.9903 -1.0928 26 1 4.1081 -3.5398 -1.6393 27 8 5.8661 -3.9020 -0.6156 28 6 4.2349 -2.2632 0.0942 29 1 -0.4850 0.8400 0.0004 30 1 2.9909 0.3503 -1.7555 31 1 4.5583 0.3817 -0.9101 32 1 4.9239 -0.2923 -3.2388 33 1 3.6985 -1.5758 -3.0916 34 1 6.4623 -1.1152 -0.3148 35 1 9.0832 -0.5002 -0.4381 36 1 8.1209 0.9823 -0.6484 37 1 8.8083 2.6651 -2.2097 38 1 10.5299 3.4857 -3.7667 39 1 12.3849 -0.2262 -3.8415 40 1 5.5217 -4.5810 -0.0195 41 1 3.6839 -2.9772 0.7062 42 1 5.0119 -1.7903 0.6949 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090568304.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:01 Heat of formation + Delta-G solvation = -27.660909 kcal Electronic energy + Delta-G solvation = -27714.707919 eV Core-core repulsion = 23721.474736 eV Total energy + Delta-G solvation = -3993.233183 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75517 -39.86576 -38.16152 -36.82527 -35.71662 -34.31439 -34.01624 -32.01099 -31.30632 -30.66185 -29.46070 -28.40399 -25.38686 -23.82556 -23.17299 -22.77528 -21.98034 -20.75920 -19.12213 -17.56234 -17.21273 -17.12133 -17.01282 -16.63321 -16.25343 -15.62036 -15.23874 -15.08621 -14.55133 -14.51385 -14.26517 -14.01791 -13.80720 -13.67587 -13.04911 -12.86699 -12.62047 -12.56626 -12.37796 -12.20517 -11.92879 -11.86324 -11.59252 -11.42874 -11.31116 -11.23743 -10.38899 -10.17062 -10.13225 -10.01684 -9.85548 -9.79337 -9.61062 -9.59083 -9.17895 -8.88954 -8.69111 -7.14369 -6.07917 -3.46242 0.67858 0.81830 1.82960 2.71537 3.17903 3.22226 3.36646 3.39549 3.51518 4.14281 4.14829 4.24013 4.34293 4.40394 4.63643 4.81305 4.83158 4.95104 5.04301 5.13126 5.20038 5.24859 5.31338 5.38966 5.48927 5.52919 5.63338 5.70896 5.80560 5.93857 6.12681 6.21263 6.26563 6.29223 6.39139 6.52691 6.61285 6.76107 7.55614 7.62509 7.71161 7.84602 8.18534 8.31979 8.77497 9.56904 9.91570 11.07577 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015990 B = 0.003477 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.726620 B = 8051.288828 C = 9306.316151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.027 3.973 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.267 4.267 8 H 0.087 0.913 9 N -0.600 5.600 10 C 0.127 3.873 11 C -0.145 4.145 12 C 0.166 3.834 13 H 0.085 0.915 14 N -0.707 5.707 15 C 0.520 3.480 16 O -0.536 6.536 17 C -0.114 4.114 18 C -0.008 4.008 19 C -0.150 4.150 20 C 0.101 3.899 21 N -0.473 5.473 22 C 0.112 3.888 23 C -0.072 4.072 24 Cl -0.048 7.048 25 C 0.076 3.924 26 H 0.071 0.929 27 O -0.569 6.569 28 C 0.121 3.879 29 H 0.264 0.736 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.402 0.598 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.376 0.624 41 H 0.069 0.931 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.444 -0.239 -1.746 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.172 4.172 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.395 4.395 8 H 0.104 0.896 9 N -0.325 5.325 10 C 0.001 3.999 11 C -0.185 4.185 12 C 0.062 3.938 13 H 0.103 0.897 14 N -0.359 5.359 15 C 0.305 3.695 16 O -0.413 6.413 17 C -0.153 4.153 18 C -0.017 4.017 19 C -0.170 4.170 20 C -0.055 4.055 21 N -0.182 5.182 22 C -0.046 4.046 23 C -0.101 4.101 24 Cl -0.020 7.020 25 C 0.015 3.985 26 H 0.089 0.911 27 O -0.373 6.373 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.237 0.763 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.181 0.819 40 H 0.223 0.777 41 H 0.087 0.913 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 21.345 0.303 -3.493 21.632 hybrid contribution -0.807 0.237 1.492 1.713 sum 20.538 0.540 -2.001 20.642 Atomic orbital electron populations 1.69823 1.05750 1.26765 1.52262 1.25266 0.95205 0.97629 0.99130 0.86947 0.79923 0.84663 0.77050 1.21560 1.23024 1.19669 1.18882 0.84707 0.94879 1.41039 0.89584 1.44276 1.08541 1.33016 1.46707 1.21333 0.97265 0.92012 0.89253 1.22405 0.97591 0.99211 0.99330 1.20820 0.88171 0.90817 0.93995 0.89702 1.45921 1.25191 1.53313 1.11451 1.20050 0.81806 0.79540 0.88075 1.90717 1.76028 1.60463 1.14124 1.20775 0.94871 1.01870 0.97824 1.19628 0.93321 0.93194 0.95589 1.22086 1.00660 0.95184 0.99051 1.22832 0.89699 0.99810 0.93192 1.67799 1.23503 1.03924 1.22939 1.22738 0.96959 0.91954 0.92918 1.21958 0.99081 0.87556 1.01554 1.98390 1.97776 1.15987 1.89798 1.22696 0.89549 0.89813 0.96422 0.91091 1.86481 1.37559 1.45130 1.68162 1.21557 0.92963 0.92463 0.93562 0.92577 0.90687 0.95575 0.91423 0.90407 0.76267 0.87029 0.87081 0.83804 0.81956 0.81907 0.77725 0.91271 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.97 55.49 0.78 -25.89 16 2 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 3 Si 0.88 21.32 24.34 -169.99 -4.14 17.18 16 4 H -0.29 -6.79 6.62 56.52 0.37 -6.42 16 5 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 6 H -0.27 -6.30 6.64 56.52 0.38 -5.92 16 7 C -0.27 -6.99 10.04 -15.06 -0.15 -7.14 16 8 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 9 N -0.60 -12.97 2.77 -172.35 -0.48 -13.45 16 10 C 0.13 2.58 3.95 -3.73 -0.01 2.57 16 11 C -0.15 -2.55 5.77 -26.63 -0.15 -2.70 16 12 C 0.17 2.66 2.47 -67.89 -0.17 2.49 16 13 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 14 N -0.71 -10.18 4.16 -53.77 -0.22 -10.40 16 15 C 0.52 7.46 7.65 -10.99 -0.08 7.38 16 16 O -0.54 -9.46 15.62 5.55 0.09 -9.38 16 17 C -0.11 -1.21 5.35 -29.03 -0.16 -1.37 16 18 C -0.01 -0.09 4.46 -104.28 -0.46 -0.56 16 19 C -0.15 -1.49 9.78 -39.45 -0.39 -1.87 16 20 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 21 N -0.47 -5.41 10.36 -13.22 -0.14 -5.54 16 22 C 0.11 1.23 10.99 -17.50 -0.19 1.04 16 23 C -0.07 -0.84 6.24 -39.36 -0.25 -1.09 16 24 Cl -0.05 -0.55 27.58 -51.86 -1.43 -1.98 16 25 C 0.08 1.15 3.36 -26.61 -0.09 1.06 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 O -0.57 -7.56 13.21 -35.23 -0.47 -8.02 16 28 C 0.12 2.08 5.84 -3.71 -0.02 2.06 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 1.72 4.49 -51.93 -0.23 1.48 16 31 H 0.03 0.52 6.67 -51.93 -0.35 0.18 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.38 8.14 -51.92 -0.42 0.95 16 34 H 0.40 5.32 6.87 -40.82 -0.28 5.04 16 35 H 0.11 1.04 7.47 -51.93 -0.39 0.65 16 36 H 0.11 0.94 8.04 -51.93 -0.42 0.53 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.38 3.48 9.08 45.56 0.41 3.90 16 41 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.03 0.43 6.65 -51.93 -0.35 0.09 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -33.13 354.42 -7.63 -40.76 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.55 Total: 8.06 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.41 Total: 3.32 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.06 Total: -55.28 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.38 Total: -17.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.14 Total: 17.18 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.43 Total: -1.98 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.13 -7.63 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090568304.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.100 kcal (2) G-P(sol) polarization free energy of solvation -33.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds