Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48505 * 109.46980 * 264.99557 * 3 2 1 5 5 H 1.48492 * 109.46977 * 24.99292 * 3 2 1 6 6 H 1.48496 * 109.46855 * 144.99297 * 3 2 1 7 7 C 1.38815 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 188.80778 * 7 2 1 9 9 N 1.36935 * 119.99739 * 8.80231 * 7 2 1 10 10 C 1.46741 * 125.25268 * 9.41090 * 9 7 2 11 11 C 1.54255 * 106.45501 * 161.16626 * 10 9 7 12 12 C 1.53872 * 103.65590 * 28.38111 * 11 10 9 13 13 C 1.52996 * 111.25877 * 93.76470 * 12 11 10 14 14 N 1.46499 * 109.47415 * 63.55555 * 13 12 11 15 15 C 1.34775 * 119.99984 * 179.97438 * 14 13 12 16 16 O 1.21582 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.47524 * 119.99662 * 180.02562 * 15 14 13 18 18 C 1.36783 * 126.92552 * 179.71779 * 17 15 14 19 19 C 1.41412 * 103.83866 * 179.87544 * 18 17 15 20 20 Cl 1.73598 * 126.72882 * 180.13800 * 19 18 17 21 21 N 1.30236 * 106.54344 * 0.38694 * 19 18 17 22 22 O 1.20873 * 111.96056 * 359.74845 * 21 19 18 23 23 C 1.53359 * 110.28165 * 218.28193 * 12 11 10 24 24 C 1.54264 * 106.46849 * 118.17055 * 23 12 11 25 25 C 1.55961 * 104.66843 * 334.53823 * 24 23 12 26 26 C 1.46896 * 125.24927 * 189.71681 * 9 7 2 27 27 H 1.09000 * 111.83842 * 58.46861 * 26 9 7 28 28 H 0.96993 * 120.00213 * 359.97438 * 1 2 3 29 29 H 1.08993 * 110.04544 * 280.54761 * 10 9 7 30 30 H 1.09000 * 110.03775 * 42.00969 * 10 9 7 31 31 H 1.09001 * 110.76443 * 269.76809 * 11 10 9 32 32 H 1.09001 * 110.57566 * 146.90142 * 11 10 9 33 33 H 1.08997 * 109.46900 * 183.56077 * 13 12 11 34 34 H 1.09003 * 109.47202 * 303.55770 * 13 12 11 35 35 H 0.97002 * 119.99596 * 0.02562 * 14 13 12 36 36 H 1.08004 * 128.08085 * 359.97389 * 18 17 15 37 37 H 1.09008 * 110.05014 * 237.41970 * 23 12 11 38 38 H 1.08994 * 110.05926 * 358.91623 * 23 12 11 39 39 H 1.09000 * 110.50510 * 92.61533 * 24 23 12 40 40 H 1.08995 * 110.50479 * 215.17271 * 24 23 12 41 41 H 1.09003 * 110.30725 * 278.17489 * 25 24 23 42 42 H 1.08993 * 111.48134 * 154.79752 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6034 1.9854 -1.3948 5 1 1.3987 2.6809 0.5915 6 1 3.4907 1.4731 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0807 -1.2077 0.1427 9 7 1.3377 -2.3810 -0.1825 10 6 -0.0701 -2.5004 -0.5789 11 6 -0.2523 -3.9345 -1.1171 12 6 0.8098 -4.7462 -0.3551 13 6 0.2220 -5.3834 0.9056 14 7 -0.8163 -6.3455 0.5279 15 6 -1.4767 -7.0329 1.4807 16 8 -1.2111 -6.8543 2.6536 17 6 -2.5218 -8.0021 1.1003 18 6 -3.2717 -8.7752 1.9434 19 6 -4.1103 -9.5094 1.0731 20 17 -5.3106 -10.6780 1.5286 21 7 -3.8018 -9.1411 -0.1374 22 8 -2.9258 -8.3083 -0.1471 23 6 1.4411 -5.7950 -1.2788 24 6 2.9415 -5.4489 -1.3724 25 6 3.0130 -3.9191 -1.0775 26 6 1.9125 -3.7211 -0.0049 27 1 2.2977 -3.8666 1.0043 28 1 -0.4850 0.8400 0.0004 29 1 -0.7162 -2.3376 0.2837 30 1 -0.3006 -1.7768 -1.3608 31 1 -0.0653 -3.9711 -2.1904 32 1 -1.2523 -4.3044 -0.8908 33 1 1.0110 -5.8971 1.4547 34 1 -0.2134 -4.6077 1.5356 35 1 -1.0279 -6.4882 -0.4079 36 1 -3.2335 -8.8144 3.0221 37 1 1.3130 -6.7914 -0.8556 38 1 0.9840 -5.7465 -2.2671 39 1 3.5073 -5.9960 -0.6183 40 1 3.3228 -5.6697 -2.3693 41 1 2.7794 -3.3491 -1.9768 42 1 3.9884 -3.6337 -0.6837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094563245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = 46.251885 kcal Electronic energy + Delta-G solvation = -27328.697754 eV Core-core repulsion = 23338.669671 eV Total energy + Delta-G solvation = -3990.028083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -45.58698 -40.23262 -39.04396 -37.57215 -35.09708 -34.18219 -33.96144 -32.59521 -31.72976 -30.37725 -28.06541 -26.75594 -25.29712 -24.04621 -23.90030 -23.55656 -21.33703 -20.15994 -19.99752 -19.44582 -18.37016 -18.07549 -16.98597 -16.63249 -16.01420 -15.61966 -15.43322 -14.90425 -14.78474 -14.31039 -14.17509 -13.92185 -13.56617 -13.24428 -13.17420 -12.98577 -12.84155 -12.55202 -11.91062 -11.68950 -11.53207 -11.34659 -11.21351 -10.81012 -10.76140 -10.72512 -10.60376 -10.51250 -10.32884 -10.23720 -10.14525 -9.99889 -9.86439 -9.68783 -9.60624 -9.15477 -8.56810 -6.80334 -5.74254 -3.07414 0.33064 0.98284 1.36146 2.16054 2.71698 2.95935 3.39551 3.45056 3.46520 3.79637 4.25279 4.48360 4.50674 4.59341 4.83671 4.90022 4.94983 5.22925 5.43929 5.47943 5.49575 5.69790 5.75923 5.79354 5.91102 5.98995 6.04524 6.09565 6.18203 6.22849 6.35887 6.41411 6.48701 6.62374 6.70049 6.80578 7.05646 7.11354 7.44714 7.52491 7.61254 7.78780 7.79987 8.27136 9.21205 9.82920 10.47966 11.37848 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.002475 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.284671 B =11311.353484 C =11989.011030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.227 4.227 8 H 0.076 0.924 9 N -0.594 5.594 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.081 4.081 13 C 0.138 3.862 14 N -0.701 5.701 15 C 0.601 3.399 16 O -0.506 6.506 17 C -0.062 4.062 18 C -0.140 4.140 19 C 0.051 3.949 20 Cl 0.032 6.968 21 N -0.327 5.327 22 O 0.138 5.862 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.131 4.131 26 C 0.172 3.828 27 H 0.047 0.953 28 H 0.252 0.748 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.195 0.805 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.070 0.930 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 -19.911 -0.349 20.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.094 0.906 9 N -0.318 5.318 10 C 0.052 3.948 11 C -0.174 4.174 12 C -0.082 4.082 13 C 0.016 3.984 14 N -0.352 5.352 15 C 0.382 3.618 16 O -0.382 6.382 17 C -0.128 4.128 18 C -0.163 4.163 19 C -0.132 4.132 20 Cl 0.060 6.940 21 N -0.027 5.027 22 O 0.061 5.939 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.170 4.170 26 C 0.064 3.936 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.243 0.757 36 H 0.212 0.788 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.608 -19.980 -0.620 20.761 hybrid contribution 0.172 0.737 0.399 0.855 sum -5.436 -19.243 -0.222 19.998 Atomic orbital electron populations 1.69960 1.04919 1.25162 1.56440 1.24816 0.95595 0.97763 1.02130 0.86189 0.78659 0.83593 0.77628 1.21615 1.21799 1.20731 1.18970 0.90993 0.82642 1.42913 0.90634 1.44328 1.08366 0.99551 1.79584 1.21094 0.85717 0.90028 0.97962 1.22839 0.96494 0.98933 0.99097 1.21850 0.97129 0.95378 0.93845 1.21544 0.89039 0.90693 0.97108 1.45990 1.38287 1.41167 1.09755 1.16414 0.79807 0.79594 0.85950 1.90917 1.64911 1.65147 1.17185 1.24379 1.01770 1.02404 0.84234 1.22748 0.94970 0.95791 1.02789 1.24071 0.98962 0.99902 0.90288 1.98429 1.51444 1.53552 1.90585 1.73871 1.03709 1.04332 1.20814 1.85066 1.38502 1.42004 1.28376 1.22151 0.96291 0.97413 0.99080 1.22508 0.95479 0.97625 1.00482 1.23219 0.99498 0.93689 1.00636 1.21519 0.90859 0.85367 0.95849 0.93577 0.93745 0.95250 0.92253 0.91895 0.92344 0.90812 0.89938 0.75665 0.78805 0.92265 0.91523 0.92412 0.92430 0.91082 0.92490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.28 10.57 55.49 0.59 -25.69 16 2 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16 3 Si 0.91 21.69 29.56 -169.99 -5.03 16.66 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.23 -6.02 9.90 -15.06 -0.15 -6.16 16 8 H 0.08 1.96 7.84 -52.49 -0.41 1.54 16 9 N -0.59 -14.03 2.99 -162.31 -0.49 -14.51 16 10 C 0.18 4.00 5.36 -3.25 -0.02 3.98 16 11 C -0.14 -2.22 5.82 -25.62 -0.15 -2.37 16 12 C -0.08 -1.20 0.54 -153.04 -0.08 -1.28 16 13 C 0.14 1.94 4.45 -4.04 -0.02 1.92 16 14 N -0.70 -8.07 4.63 -61.36 -0.28 -8.35 16 15 C 0.60 7.39 7.82 -12.48 -0.10 7.29 16 16 O -0.51 -7.83 16.91 5.29 0.09 -7.74 16 17 C -0.06 -0.65 7.29 -36.32 -0.26 -0.91 16 18 C -0.14 -1.33 10.96 -38.90 -0.43 -1.75 16 19 C 0.05 0.50 7.97 -17.02 -0.14 0.37 16 20 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.26 16 21 N -0.33 -3.63 12.05 32.82 0.40 -3.23 16 22 O 0.14 1.43 11.04 15.55 0.17 1.60 16 23 C -0.11 -1.35 5.60 -25.88 -0.14 -1.50 16 24 C -0.12 -1.58 6.86 -24.49 -0.17 -1.75 16 25 C -0.13 -2.18 6.33 -24.12 -0.15 -2.34 16 26 C 0.17 3.22 3.55 -65.86 -0.23 2.98 16 27 H 0.05 0.90 7.93 -51.93 -0.41 0.48 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.03 0.74 7.84 -51.93 -0.41 0.34 16 30 H 0.06 1.52 7.14 -51.93 -0.37 1.15 16 31 H 0.06 1.00 7.41 -51.93 -0.38 0.61 16 32 H 0.06 0.85 7.21 -51.93 -0.37 0.48 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 35 H 0.41 3.90 7.49 -40.82 -0.31 3.59 16 36 H 0.19 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.06 0.62 7.48 -51.92 -0.39 0.23 16 38 H 0.07 0.77 7.27 -51.93 -0.38 0.39 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -29.80 359.01 -8.32 -38.11 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.52 Total: 0.79 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.13 Total: -1.79 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.21 Total: -51.79 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.26 Total: -6.14 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.80 -8.32 -38.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094563245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.366 kcal (2) G-P(sol) polarization free energy of solvation -29.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds