Wall clock time and date at job start Tue Mar 31 2020 22:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48505 * 109.46980 * 264.99557 * 3 2 1 5 5 H 1.48492 * 109.46977 * 24.99292 * 3 2 1 6 6 H 1.48496 * 109.46855 * 144.99297 * 3 2 1 7 7 C 1.38815 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00180 * 188.80778 * 7 2 1 9 9 N 1.36935 * 119.99739 * 8.80231 * 7 2 1 10 10 C 1.46741 * 125.25268 * 9.41090 * 9 7 2 11 11 C 1.54255 * 106.45501 * 161.16626 * 10 9 7 12 12 C 1.53872 * 103.65590 * 28.38111 * 11 10 9 13 13 C 1.52996 * 111.25877 * 93.76470 * 12 11 10 14 14 N 1.46499 * 109.47415 * 63.55555 * 13 12 11 15 15 C 1.34775 * 119.99984 * 179.97438 * 14 13 12 16 16 O 1.21582 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.47524 * 119.99662 * 180.02562 * 15 14 13 18 18 C 1.36783 * 126.92552 * 179.71779 * 17 15 14 19 19 C 1.41412 * 103.83866 * 179.87544 * 18 17 15 20 20 Cl 1.73598 * 126.72882 * 180.13800 * 19 18 17 21 21 N 1.30236 * 106.54344 * 0.38694 * 19 18 17 22 22 O 1.20873 * 111.96056 * 359.74845 * 21 19 18 23 23 C 1.53359 * 110.28165 * 218.28193 * 12 11 10 24 24 C 1.54264 * 106.46849 * 118.17055 * 23 12 11 25 25 C 1.55961 * 104.66843 * 334.53823 * 24 23 12 26 26 C 1.46896 * 125.24927 * 189.71681 * 9 7 2 27 27 H 1.09000 * 111.83842 * 58.46861 * 26 9 7 28 28 H 0.96993 * 120.00213 * 359.97438 * 1 2 3 29 29 H 1.08993 * 110.04544 * 280.54761 * 10 9 7 30 30 H 1.09000 * 110.03775 * 42.00969 * 10 9 7 31 31 H 1.09001 * 110.76443 * 269.76809 * 11 10 9 32 32 H 1.09001 * 110.57566 * 146.90142 * 11 10 9 33 33 H 1.08997 * 109.46900 * 183.56077 * 13 12 11 34 34 H 1.09003 * 109.47202 * 303.55770 * 13 12 11 35 35 H 0.97002 * 119.99596 * 0.02562 * 14 13 12 36 36 H 1.08004 * 128.08085 * 359.97389 * 18 17 15 37 37 H 1.09008 * 110.05014 * 237.41970 * 23 12 11 38 38 H 1.08994 * 110.05926 * 358.91623 * 23 12 11 39 39 H 1.09000 * 110.50510 * 92.61533 * 24 23 12 40 40 H 1.08995 * 110.50479 * 215.17271 * 24 23 12 41 41 H 1.09003 * 110.30725 * 278.17489 * 25 24 23 42 42 H 1.08993 * 111.48134 * 154.79752 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6034 1.9854 -1.3948 5 1 1.3987 2.6809 0.5915 6 1 3.4907 1.4731 0.8032 7 6 2.0103 -1.2021 -0.0005 8 1 3.0807 -1.2077 0.1427 9 7 1.3377 -2.3810 -0.1825 10 6 -0.0701 -2.5004 -0.5789 11 6 -0.2523 -3.9345 -1.1171 12 6 0.8098 -4.7462 -0.3551 13 6 0.2220 -5.3834 0.9056 14 7 -0.8163 -6.3455 0.5279 15 6 -1.4767 -7.0329 1.4807 16 8 -1.2111 -6.8543 2.6536 17 6 -2.5218 -8.0021 1.1003 18 6 -3.2717 -8.7752 1.9434 19 6 -4.1103 -9.5094 1.0731 20 17 -5.3106 -10.6780 1.5286 21 7 -3.8018 -9.1411 -0.1374 22 8 -2.9258 -8.3083 -0.1471 23 6 1.4411 -5.7950 -1.2788 24 6 2.9415 -5.4489 -1.3724 25 6 3.0130 -3.9191 -1.0775 26 6 1.9125 -3.7211 -0.0049 27 1 2.2977 -3.8666 1.0043 28 1 -0.4850 0.8400 0.0004 29 1 -0.7162 -2.3376 0.2837 30 1 -0.3006 -1.7768 -1.3608 31 1 -0.0653 -3.9711 -2.1904 32 1 -1.2523 -4.3044 -0.8908 33 1 1.0110 -5.8971 1.4547 34 1 -0.2134 -4.6077 1.5356 35 1 -1.0279 -6.4882 -0.4079 36 1 -3.2335 -8.8144 3.0221 37 1 1.3130 -6.7914 -0.8556 38 1 0.9840 -5.7465 -2.2671 39 1 3.5073 -5.9960 -0.6183 40 1 3.3228 -5.6697 -2.3693 41 1 2.7794 -3.3491 -1.9768 42 1 3.9884 -3.6337 -0.6837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094563245.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:14 Heat of formation + Delta-G solvation = 28.114254 kcal Electronic energy + Delta-G solvation = -27329.484260 eV Core-core repulsion = 23338.669671 eV Total energy + Delta-G solvation = -3990.814590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.38481 -41.42488 -40.27561 -38.26833 -36.43368 -35.51732 -34.87087 -33.60045 -33.28326 -31.94564 -29.38195 -28.33141 -26.43444 -25.68319 -24.84133 -24.59403 -22.39815 -21.72828 -21.24124 -20.43351 -19.38574 -19.17928 -18.72445 -17.54717 -17.08772 -16.83351 -16.62869 -16.47334 -15.94077 -15.78957 -15.13876 -15.01431 -14.89168 -14.53136 -14.38316 -14.11449 -13.88063 -13.62679 -13.42599 -13.35551 -12.89086 -12.82528 -12.55937 -12.38610 -12.24724 -11.99721 -11.86528 -11.74608 -11.60369 -11.44860 -11.34975 -11.30250 -11.25254 -11.06986 -11.02833 -10.61055 -10.23936 -8.76903 -7.82617 -5.16066 -0.50029 0.26192 0.58903 1.27737 1.46483 1.47689 1.55563 1.77151 2.03365 2.52140 2.99358 3.34781 3.48760 3.50864 3.67535 3.71385 3.74482 3.77896 3.99897 4.28950 4.42335 4.45815 4.54314 4.55395 4.63110 4.71344 4.76929 4.89355 4.98288 5.03937 5.16166 5.20371 5.23760 5.36364 5.42716 5.49991 5.57156 5.66166 5.73475 5.83235 6.16942 6.27486 6.64365 6.84716 7.16109 7.86902 8.49485 9.28076 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.002475 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.284671 B =11311.353484 C =11989.011030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.299 1.299 6 H -0.271 1.271 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.613 5.613 10 C 0.183 3.817 11 C -0.119 4.119 12 C -0.066 4.066 13 C 0.149 3.851 14 N -0.690 5.690 15 C 0.608 3.392 16 O -0.540 6.540 17 C -0.067 4.067 18 C -0.129 4.129 19 C 0.047 3.953 20 Cl 0.046 6.954 21 N -0.341 5.341 22 O 0.144 5.856 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.127 4.127 26 C 0.157 3.843 27 H 0.037 0.963 28 H 0.244 0.756 29 H -0.010 1.010 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.421 0.579 36 H 0.212 0.788 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.048 0.952 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.634 -22.714 -1.134 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.213 1.213 5 H -0.225 1.225 6 H -0.196 1.196 7 C -0.359 4.359 8 H 0.095 0.905 9 N -0.337 5.337 10 C 0.058 3.942 11 C -0.157 4.157 12 C -0.067 4.067 13 C 0.026 3.974 14 N -0.341 5.341 15 C 0.391 3.609 16 O -0.418 6.418 17 C -0.133 4.133 18 C -0.152 4.152 19 C -0.136 4.136 20 Cl 0.074 6.926 21 N -0.041 5.041 22 O 0.066 5.934 23 C -0.141 4.141 24 C -0.149 4.149 25 C -0.166 4.166 26 C 0.050 3.950 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.008 0.992 30 H 0.038 0.962 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.229 0.771 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.052 -22.834 -1.435 23.430 hybrid contribution -0.010 1.578 0.689 1.722 sum -5.062 -21.256 -0.747 21.863 Atomic orbital electron populations 1.70172 1.06252 1.25095 1.58319 1.25584 0.96399 1.00881 1.03105 0.85211 0.77632 0.79661 0.77569 1.21318 1.22546 1.19564 1.19312 0.91359 0.84075 1.41167 0.90467 1.44604 1.08799 1.00824 1.79486 1.20848 0.84874 0.93139 0.95329 1.22691 0.98392 0.94869 0.99778 1.21725 0.95342 0.95171 0.94506 1.21249 0.89582 0.90374 0.96223 1.45776 1.37615 1.40320 1.10425 1.16462 0.79654 0.79366 0.85374 1.90908 1.66023 1.66305 1.18580 1.23986 1.01948 1.02692 0.84715 1.23008 0.93922 0.94675 1.03550 1.24223 0.99223 1.00102 0.90016 1.98438 1.50822 1.52938 1.90418 1.73851 1.04045 1.04691 1.21467 1.85057 1.38368 1.41887 1.28088 1.22149 0.95408 0.97394 0.99168 1.22467 0.96304 0.94015 1.02161 1.23058 0.98108 0.96900 0.98574 1.21835 0.92934 0.84069 0.96173 0.94513 0.94632 0.99234 0.96208 0.90461 0.90236 0.89909 0.93357 0.74136 0.77147 0.89454 0.89899 0.90891 0.90420 0.93339 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.15 10.57 21.65 0.23 -56.93 16 2 C -0.07 -3.77 5.41 84.86 0.46 -3.32 16 3 Si 0.97 45.90 29.56 68.60 2.03 47.93 16 4 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.23 -12.58 9.90 84.03 0.83 -11.74 16 8 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16 9 N -0.61 -29.92 2.99 -667.44 -2.00 -31.92 16 10 C 0.18 8.68 5.36 86.76 0.47 9.14 16 11 C -0.12 -3.81 5.82 31.31 0.18 -3.63 16 12 C -0.07 -1.86 0.54 -51.23 -0.03 -1.88 16 13 C 0.15 3.98 4.45 86.38 0.38 4.37 16 14 N -0.69 -14.35 4.63 -466.30 -2.16 -16.51 16 15 C 0.61 13.93 7.82 86.69 0.68 14.61 16 16 O -0.54 -16.20 16.91 -3.97 -0.07 -16.27 16 17 C -0.07 -1.27 7.29 24.38 0.18 -1.09 16 18 C -0.13 -2.17 10.96 22.71 0.25 -1.92 16 19 C 0.05 0.83 7.97 85.71 0.68 1.52 16 20 Cl 0.05 0.67 29.33 -2.72 -0.08 0.59 16 21 N -0.34 -6.82 12.05 -51.02 -0.61 -7.43 16 22 O 0.14 2.64 11.04 65.84 0.73 3.37 16 23 C -0.10 -2.08 5.60 31.14 0.17 -1.90 16 24 C -0.11 -2.45 6.86 32.05 0.22 -2.23 16 25 C -0.13 -4.09 6.33 32.29 0.20 -3.88 16 26 C 0.16 5.83 3.55 46.12 0.16 5.99 16 27 H 0.04 1.44 7.93 -2.39 -0.02 1.42 16 28 H 0.24 14.44 8.31 -92.71 -0.77 13.67 16 29 H -0.01 -0.56 7.84 -2.39 -0.02 -0.58 16 30 H 0.02 1.06 7.14 -2.39 -0.02 1.05 16 31 H 0.08 2.29 7.41 -2.39 -0.02 2.28 16 32 H 0.08 2.21 7.21 -2.39 -0.02 2.19 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.42 6.65 7.49 -92.71 -0.69 5.95 16 36 H 0.21 2.72 8.06 -2.91 -0.02 2.70 16 37 H 0.09 1.36 7.48 -2.38 -0.02 1.34 16 38 H 0.08 1.48 7.27 -2.39 -0.02 1.47 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.05 1.78 8.06 -2.39 -0.02 1.76 16 42 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -68.56 359.01 3.28 -65.28 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.37 Total: 7.87 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 4.85 Total: 4.02 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -4.54 Total: -112.79 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: 0.66 Total: -12.90 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -68.56 3.28 -65.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094563245.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.395 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds