Wall clock time and date at job start Tue Mar 31 2020 22:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30205 * 126.78678 * 2 1 4 4 O 1.20921 * 111.64768 * 180.02562 * 3 2 1 5 5 C 1.34065 * 111.54674 * 359.76916 * 4 3 2 6 6 Cl 1.73610 * 126.79473 * 180.25310 * 5 4 3 7 7 C 1.35676 * 106.41017 * 0.37607 * 5 4 3 8 8 C 1.50695 * 128.01471 * 179.91587 * 7 5 4 9 9 C 1.50701 * 109.46911 * 269.67632 * 8 7 5 10 10 O 1.21275 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99730 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.56378 * 33.06157 * 12 11 9 14 14 C 1.54852 * 110.62699 * 155.96084 * 12 11 9 15 15 C 1.55843 * 103.44589 * 118.48666 * 14 12 11 16 16 H 1.08999 * 115.56144 * 159.56991 * 15 14 12 17 17 C 1.55848 * 105.06346 * 288.17283 * 15 14 12 18 18 C 1.54853 * 103.43932 * 71.82882 * 17 15 14 19 19 C 1.55848 * 110.62681 * 270.15730 * 12 11 9 20 20 H 1.09003 * 115.56145 * 81.94516 * 19 12 11 21 21 N 1.50238 * 101.05159 * 32.93864 * 15 14 12 22 22 C 1.36940 * 130.83648 * 126.02893 * 21 15 14 23 23 H 1.08001 * 119.99294 * 180.02562 * 22 21 15 24 24 C 1.38806 * 120.00067 * 0.02562 * 22 21 15 25 25 N 1.31619 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47126 * 90.00215 * 26 24 22 28 28 H 1.48503 * 109.47217 * 210.00164 * 26 24 22 29 29 H 1.48500 * 109.47155 * 329.99843 * 26 24 22 30 30 H 1.09000 * 109.47187 * 269.97065 * 1 2 3 31 31 H 1.09005 * 109.47167 * 29.97310 * 1 2 3 32 32 H 1.08998 * 109.47451 * 149.97221 * 1 2 3 33 33 H 1.08999 * 109.47354 * 149.68044 * 8 7 5 34 34 H 1.08997 * 109.47523 * 29.67702 * 8 7 5 35 35 H 0.97001 * 120.00047 * 359.97438 * 11 9 8 36 36 H 1.08997 * 110.62754 * 236.97476 * 14 12 11 37 37 H 1.08999 * 110.62560 * 359.83619 * 14 12 11 38 38 H 1.08999 * 110.62427 * 190.31181 * 17 15 14 39 39 H 1.08996 * 110.62854 * 313.33711 * 17 15 14 40 40 H 1.09003 * 110.63068 * 118.49345 * 18 17 15 41 41 H 1.09009 * 110.62430 * 241.50393 * 18 17 15 42 42 H 0.96998 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6036 -0.6053 0.0041 6 17 5.1012 -1.4835 0.0113 7 6 2.3530 -1.1315 -0.0008 8 6 1.9580 -2.5857 -0.0003 9 6 1.8251 -3.0705 -1.4210 10 8 2.0313 -2.3102 -2.3430 11 7 1.4770 -4.3492 -1.6669 12 6 1.3483 -4.8206 -3.0480 13 1 2.0636 -4.3120 -3.6944 14 6 1.5425 -6.3552 -3.1209 15 6 0.1777 -6.8673 -3.6720 16 1 0.1957 -7.8582 -4.1259 17 6 -0.8283 -6.6849 -2.4957 18 6 -1.0224 -5.1504 -2.4229 19 6 -0.1063 -4.6106 -3.5665 20 1 -0.3372 -3.6079 -3.9262 21 7 -0.2171 -5.7278 -4.5679 22 6 -0.5685 -5.7094 -5.8913 23 1 -0.8240 -4.7752 -6.3692 24 6 -0.5964 -6.8914 -6.6185 25 7 -0.2845 -8.0298 -6.0362 26 14 -1.0765 -6.8664 -8.4236 27 1 0.1379 -6.6735 -9.2562 28 1 -1.7228 -8.1546 -8.7818 29 1 -2.0264 -5.7514 -8.6678 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.0044 -2.7031 0.5143 34 1 2.7220 -3.1697 0.5128 35 1 1.3124 -4.9575 -0.9294 36 1 2.3521 -6.6077 -3.8056 37 1 1.7374 -6.7651 -2.1299 38 1 -1.7729 -7.1814 -2.7179 39 1 -0.4040 -7.0629 -1.5656 40 1 -2.0634 -4.8857 -2.6088 41 1 -0.6946 -4.7673 -1.4565 42 1 -0.3036 -8.8558 -6.5445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096165821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:46 Heat of formation + Delta-G solvation = 72.130516 kcal Electronic energy + Delta-G solvation = -27608.420758 eV Core-core repulsion = 23619.514856 eV Total energy + Delta-G solvation = -3988.905902 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -45.25116 -40.07948 -38.48964 -37.44397 -35.52085 -33.96181 -32.66997 -32.31213 -29.76518 -29.19558 -29.03071 -28.68970 -27.21781 -24.24252 -22.67729 -21.71257 -21.34497 -20.49287 -19.55520 -18.61083 -18.11031 -17.92298 -17.17792 -16.73234 -15.93597 -15.48003 -14.99442 -14.89008 -14.45823 -13.96427 -13.84145 -13.63988 -13.52699 -13.31325 -12.91048 -12.66167 -12.56152 -12.36760 -12.18449 -12.02996 -11.77913 -11.52027 -11.13213 -11.07864 -10.94957 -10.92287 -10.85874 -10.26826 -10.24793 -10.11619 -9.90381 -9.77955 -9.43068 -9.37928 -9.23828 -8.95731 -8.55270 -6.94029 -5.75215 -3.13079 0.81529 1.01765 1.83316 2.76434 3.28810 3.38643 3.43762 3.44966 3.50328 3.80632 4.28461 4.43459 4.57855 4.62137 4.94683 5.11578 5.16329 5.24203 5.30116 5.35911 5.39644 5.45218 5.54670 5.76638 5.80839 5.84020 5.92981 6.02802 6.07370 6.26383 6.29044 6.49761 6.54913 6.63960 6.77273 6.92043 6.95498 7.23798 7.49977 7.69446 7.79535 7.85358 8.12860 8.42511 9.08208 9.70655 10.50364 11.34577 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.002793 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.172688 B =10020.954983 C =10168.111570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.046 3.954 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.012 3.988 6 Cl 0.047 6.953 7 C -0.146 4.146 8 C -0.070 4.070 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.710 5.710 12 C 0.127 3.873 13 H 0.083 0.917 14 C -0.141 4.141 15 C 0.156 3.844 16 H 0.153 0.847 17 C -0.137 4.137 18 C -0.130 4.130 19 C 0.128 3.872 20 H 0.085 0.915 21 N -0.589 5.589 22 C -0.211 4.211 23 H 0.079 0.921 24 C -0.011 4.011 25 N -0.923 5.923 26 Si 0.916 3.084 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.347 8.814 18.269 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 N -0.056 5.056 4 O 0.042 5.958 5 C -0.078 4.078 6 Cl 0.076 6.924 7 C -0.151 4.151 8 C -0.110 4.110 9 C 0.294 3.706 10 O -0.409 6.409 11 N -0.362 5.362 12 C 0.022 3.978 13 H 0.101 0.899 14 C -0.181 4.181 15 C 0.050 3.950 16 H 0.170 0.830 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.103 0.897 21 N -0.310 5.310 22 C -0.339 4.339 23 H 0.097 0.903 24 C -0.207 4.207 25 N -0.572 5.572 26 Si 0.747 3.253 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.131 0.869 34 H 0.126 0.874 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.348 10.451 17.255 20.870 hybrid contribution -0.051 -1.114 -0.539 1.239 sum 5.297 9.336 16.717 19.866 Atomic orbital electron populations 1.20241 0.85169 1.04689 1.03467 1.23250 0.99111 0.87682 1.01273 1.73911 0.88473 1.22897 1.20274 1.84898 1.22167 1.20538 1.68163 1.24467 0.90815 0.84990 1.07577 1.98454 1.28301 1.68991 1.96676 1.20099 0.90035 0.96871 1.08087 1.20024 1.04841 0.89583 0.96592 1.20237 0.77410 0.82610 0.90348 1.90739 1.49547 1.54674 1.45907 1.46216 1.69373 1.10888 1.09681 1.22666 0.99574 0.95403 0.80201 0.89882 1.23302 1.01959 0.93267 0.99594 1.23695 0.87854 0.96426 0.87056 0.83038 1.23053 1.01043 0.95042 0.98540 1.22968 0.99445 0.96801 0.97776 1.23274 0.92344 0.92935 0.89529 0.89703 1.46502 1.77435 1.01229 1.05798 1.19063 1.37656 0.93842 0.83350 0.90336 1.24688 1.02394 0.95177 0.98395 1.69459 1.55125 0.97688 1.34894 0.86043 0.78036 0.76838 0.84421 1.21628 1.21669 1.20748 0.89767 0.90014 0.89498 0.86936 0.87368 0.76985 0.91667 0.92692 0.92650 0.93616 0.93081 0.93134 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 36.01 0.37 -0.32 16 2 C 0.05 0.54 7.32 -82.13 -0.60 -0.06 16 3 N -0.35 -4.66 12.07 33.43 0.40 -4.25 16 4 O 0.11 1.40 11.20 17.11 0.19 1.59 16 5 C 0.01 0.14 8.12 29.82 0.24 0.38 16 6 Cl 0.05 0.47 29.23 -51.86 -1.52 -1.05 16 7 C -0.15 -1.67 4.82 -104.39 -0.50 -2.17 16 8 C -0.07 -0.65 6.10 -29.04 -0.18 -0.83 16 9 C 0.51 6.89 7.82 -10.98 -0.09 6.80 16 10 O -0.53 -9.73 15.70 5.56 0.09 -9.64 16 11 N -0.71 -9.32 3.70 -51.40 -0.19 -9.51 16 12 C 0.13 2.25 3.13 -65.44 -0.20 2.05 16 13 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 14 C -0.14 -2.56 6.20 -24.24 -0.15 -2.71 16 15 C 0.16 3.39 4.69 -62.80 -0.29 3.09 16 16 H 0.15 3.79 5.57 -51.93 -0.29 3.50 16 17 C -0.14 -2.50 6.44 -24.23 -0.16 -2.65 16 18 C -0.13 -2.23 6.32 -24.06 -0.15 -2.38 16 19 C 0.13 2.57 5.39 -62.51 -0.34 2.23 16 20 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 21 N -0.59 -14.30 2.98 -145.48 -0.43 -14.74 16 22 C -0.21 -5.74 10.58 -15.06 -0.16 -5.90 16 23 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.92 -25.80 10.48 55.49 0.58 -25.21 16 26 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 3.99 7.92 -40.82 -0.32 3.67 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.05 0.81 7.39 -51.93 -0.38 0.43 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.70 6.39 -51.92 -0.33 0.37 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 361.15 15.07 5.44 5.44 Total: -1.00 -31.89 361.15 -8.24 -40.12 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.48 Total: 3.30 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.30 Total: -2.87 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.36 Total: -53.72 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.28 Total: -8.05 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.52 Total: -1.05 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.89 -8.24 -40.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096165821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.254 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds