Wall clock time and date at job start Tue Mar 31 2020 22:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30205 * 126.78678 * 2 1 4 4 O 1.20921 * 111.64768 * 180.02562 * 3 2 1 5 5 C 1.34065 * 111.54674 * 359.76916 * 4 3 2 6 6 Cl 1.73610 * 126.79473 * 180.25310 * 5 4 3 7 7 C 1.35676 * 106.41017 * 0.37607 * 5 4 3 8 8 C 1.50695 * 128.01471 * 179.91587 * 7 5 4 9 9 C 1.50701 * 109.46911 * 269.67632 * 8 7 5 10 10 O 1.21275 * 120.00098 * 0.02562 * 9 8 7 11 11 N 1.34782 * 119.99730 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99669 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.56378 * 33.06157 * 12 11 9 14 14 C 1.54852 * 110.62699 * 155.96084 * 12 11 9 15 15 C 1.55843 * 103.44589 * 118.48666 * 14 12 11 16 16 H 1.08999 * 115.56144 * 159.56991 * 15 14 12 17 17 C 1.55848 * 105.06346 * 288.17283 * 15 14 12 18 18 C 1.54853 * 103.43932 * 71.82882 * 17 15 14 19 19 C 1.55848 * 110.62681 * 270.15730 * 12 11 9 20 20 H 1.09003 * 115.56145 * 81.94516 * 19 12 11 21 21 N 1.50238 * 101.05159 * 32.93864 * 15 14 12 22 22 C 1.36940 * 130.83648 * 126.02893 * 21 15 14 23 23 H 1.08001 * 119.99294 * 180.02562 * 22 21 15 24 24 C 1.38806 * 120.00067 * 0.02562 * 22 21 15 25 25 N 1.31619 * 120.00168 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47126 * 90.00215 * 26 24 22 28 28 H 1.48503 * 109.47217 * 210.00164 * 26 24 22 29 29 H 1.48500 * 109.47155 * 329.99843 * 26 24 22 30 30 H 1.09000 * 109.47187 * 269.97065 * 1 2 3 31 31 H 1.09005 * 109.47167 * 29.97310 * 1 2 3 32 32 H 1.08998 * 109.47451 * 149.97221 * 1 2 3 33 33 H 1.08999 * 109.47354 * 149.68044 * 8 7 5 34 34 H 1.08997 * 109.47523 * 29.67702 * 8 7 5 35 35 H 0.97001 * 120.00047 * 359.97438 * 11 9 8 36 36 H 1.08997 * 110.62754 * 236.97476 * 14 12 11 37 37 H 1.08999 * 110.62560 * 359.83619 * 14 12 11 38 38 H 1.08999 * 110.62427 * 190.31181 * 17 15 14 39 39 H 1.08996 * 110.62854 * 313.33711 * 17 15 14 40 40 H 1.09003 * 110.63068 * 118.49345 * 18 17 15 41 41 H 1.09009 * 110.62430 * 241.50393 * 18 17 15 42 42 H 0.96998 * 119.99888 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0428 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6036 -0.6053 0.0041 6 17 5.1012 -1.4835 0.0113 7 6 2.3530 -1.1315 -0.0008 8 6 1.9580 -2.5857 -0.0003 9 6 1.8251 -3.0705 -1.4210 10 8 2.0313 -2.3102 -2.3430 11 7 1.4770 -4.3492 -1.6669 12 6 1.3483 -4.8206 -3.0480 13 1 2.0636 -4.3120 -3.6944 14 6 1.5425 -6.3552 -3.1209 15 6 0.1777 -6.8673 -3.6720 16 1 0.1957 -7.8582 -4.1259 17 6 -0.8283 -6.6849 -2.4957 18 6 -1.0224 -5.1504 -2.4229 19 6 -0.1063 -4.6106 -3.5665 20 1 -0.3372 -3.6079 -3.9262 21 7 -0.2171 -5.7278 -4.5679 22 6 -0.5685 -5.7094 -5.8913 23 1 -0.8240 -4.7752 -6.3692 24 6 -0.5964 -6.8914 -6.6185 25 7 -0.2845 -8.0298 -6.0362 26 14 -1.0765 -6.8664 -8.4236 27 1 0.1379 -6.6735 -9.2562 28 1 -1.7228 -8.1546 -8.7818 29 1 -2.0264 -5.7514 -8.6678 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.0044 -2.7031 0.5143 34 1 2.7220 -3.1697 0.5128 35 1 1.3124 -4.9575 -0.9294 36 1 2.3521 -6.6077 -3.8056 37 1 1.7374 -6.7651 -2.1299 38 1 -1.7729 -7.1814 -2.7179 39 1 -0.4040 -7.0629 -1.5656 40 1 -2.0634 -4.8857 -2.6088 41 1 -0.6946 -4.7673 -1.4565 42 1 -0.3036 -8.8558 -6.5445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096165821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:45 Heat of formation + Delta-G solvation = 52.402153 kcal Electronic energy + Delta-G solvation = -27609.276244 eV Core-core repulsion = 23619.514856 eV Total energy + Delta-G solvation = -3989.761388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.12867 -41.42433 -39.82654 -38.26506 -36.39281 -35.40056 -34.19841 -33.46339 -31.00675 -30.90455 -30.18296 -29.64526 -28.58383 -26.09131 -23.71637 -22.72159 -22.53842 -21.76172 -21.11121 -20.09774 -19.08847 -18.90470 -18.73974 -17.92439 -16.93264 -16.81337 -16.63084 -16.19929 -15.91127 -15.50062 -14.97507 -14.63973 -14.25442 -14.14430 -14.03942 -13.89324 -13.63865 -13.45712 -13.45073 -13.19164 -13.10939 -12.91881 -12.79790 -12.75685 -12.56502 -12.32456 -11.99111 -11.94435 -11.87288 -11.52752 -11.21285 -11.08740 -11.01073 -10.79300 -10.73492 -10.25815 -9.93122 -8.83164 -7.79135 -5.17520 -0.03062 0.15035 0.98036 1.45826 1.46952 1.54793 1.72581 2.27774 2.49875 2.56582 3.01257 3.34790 3.49088 3.54620 3.77798 3.78819 3.96596 4.09382 4.17600 4.21296 4.44876 4.48146 4.52400 4.62769 4.65466 4.67886 4.71847 4.76557 4.76956 4.86953 5.02409 5.12669 5.17060 5.20048 5.29045 5.37445 5.51600 5.58982 5.81353 5.92760 6.29100 6.71017 6.98046 7.07335 7.40344 7.70676 8.56497 9.27677 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.002793 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.172688 B =10020.954983 C =10168.111570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.041 3.959 3 N -0.376 5.376 4 O 0.092 5.908 5 C 0.003 3.997 6 Cl 0.061 6.939 7 C -0.153 4.153 8 C -0.060 4.060 9 C 0.511 3.489 10 O -0.584 6.584 11 N -0.695 5.695 12 C 0.148 3.852 13 H 0.048 0.952 14 C -0.126 4.126 15 C 0.138 3.862 16 H 0.116 0.884 17 C -0.126 4.126 18 C -0.114 4.114 19 C 0.118 3.882 20 H 0.065 0.935 21 N -0.620 5.620 22 C -0.224 4.224 23 H 0.069 0.931 24 C -0.062 4.062 25 N -0.943 5.943 26 Si 0.972 3.028 27 H -0.291 1.291 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.139 0.861 35 H 0.418 0.582 36 H 0.040 0.960 37 H 0.101 0.899 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.096 0.904 42 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 8.558 21.361 23.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.086 5.086 4 O 0.029 5.971 5 C -0.087 4.087 6 Cl 0.089 6.911 7 C -0.158 4.158 8 C -0.100 4.100 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.348 5.348 12 C 0.041 3.959 13 H 0.066 0.934 14 C -0.166 4.166 15 C 0.032 3.968 16 H 0.133 0.867 17 C -0.165 4.165 18 C -0.153 4.153 19 C 0.010 3.990 20 H 0.083 0.917 21 N -0.342 5.342 22 C -0.353 4.353 23 H 0.087 0.913 24 C -0.255 4.255 25 N -0.592 5.592 26 Si 0.801 3.199 27 H -0.218 1.218 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.131 0.869 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.172 0.828 34 H 0.157 0.843 35 H 0.257 0.743 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.051 0.949 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.114 0.886 42 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.112 10.191 20.420 23.387 hybrid contribution 0.073 -0.980 -1.497 1.791 sum 5.185 9.211 18.923 21.675 Atomic orbital electron populations 1.20395 0.83227 1.04682 1.05306 1.23835 1.00450 0.87536 0.99952 1.73907 0.88838 1.24014 1.21832 1.84857 1.22247 1.21288 1.68749 1.24797 0.91789 0.84845 1.07270 1.98456 1.27588 1.68482 1.96588 1.20428 0.89653 0.97921 1.07838 1.20143 1.08075 0.88191 0.93583 1.20969 0.75693 0.81826 0.91684 1.90742 1.51543 1.56005 1.48056 1.45904 1.69233 1.11454 1.08200 1.22018 0.96868 0.94764 0.82278 0.93397 1.23126 0.98989 0.93284 1.01194 1.23625 0.90852 0.94404 0.87906 0.86664 1.22947 0.99089 0.95613 0.98822 1.22875 0.98214 0.95833 0.98422 1.23425 0.94673 0.91211 0.89712 0.91705 1.46781 1.78027 1.03744 1.05660 1.19279 1.37145 0.93552 0.85373 0.91336 1.25360 1.03319 0.95094 1.01705 1.69690 1.56207 0.97715 1.35628 0.85172 0.77542 0.76677 0.80512 1.21804 1.21696 1.20186 0.86893 0.90469 0.89021 0.82842 0.84284 0.74332 0.94098 0.88127 0.94886 0.89024 0.94055 0.88579 0.94200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.39 71.24 0.74 -0.44 16 2 C 0.04 0.89 7.32 43.55 0.32 1.21 16 3 N -0.38 -9.80 12.07 -49.44 -0.60 -10.40 16 4 O 0.09 2.33 11.20 71.40 0.80 3.13 16 5 C 0.00 0.07 8.12 67.23 0.55 0.61 16 6 Cl 0.06 1.09 29.23 -2.72 -0.08 1.02 16 7 C -0.15 -3.11 4.82 -19.71 -0.10 -3.20 16 8 C -0.06 -0.84 6.10 29.10 0.18 -0.66 16 9 C 0.51 12.16 7.82 87.66 0.69 12.85 16 10 O -0.58 -20.69 15.70 -3.01 -0.05 -20.74 16 11 N -0.69 -15.46 3.70 -434.91 -1.61 -17.07 16 12 C 0.15 5.03 3.13 46.61 0.15 5.17 16 13 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 14 C -0.13 -4.35 6.20 32.21 0.20 -4.15 16 15 C 0.14 5.93 4.69 46.23 0.22 6.14 16 16 H 0.12 5.89 5.57 -2.39 -0.01 5.88 16 17 C -0.13 -4.22 6.44 32.21 0.21 -4.01 16 18 C -0.11 -3.57 6.32 32.32 0.20 -3.36 16 19 C 0.12 4.65 5.39 46.30 0.25 4.90 16 20 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 21 N -0.62 -30.66 2.98 -614.17 -1.83 -32.50 16 22 C -0.22 -12.62 10.58 84.03 0.89 -11.73 16 23 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 24 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 25 N -0.94 -54.28 10.48 21.65 0.23 -54.06 16 26 Si 0.97 46.07 29.55 68.60 2.03 48.10 16 27 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 28 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 29 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.42 5.77 7.92 -92.71 -0.73 5.04 16 36 H 0.04 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.10 2.51 7.39 -2.39 -0.02 2.49 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.09 2.24 7.82 -2.39 -0.02 2.23 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 2.11 6.39 -2.38 -0.02 2.10 16 42 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -75.19 361.15 4.17 -71.01 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.34 Total: 11.17 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.95 Total: 0.33 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.81 Total: -114.02 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.75 Total: -17.61 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: 1.09 SS G_CDS: -0.08 Total: 1.02 kcal Total: -75.19 4.17 -71.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096165821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.416 kcal (2) G-P(sol) polarization free energy of solvation -75.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds