Wall clock time and date at job start Tue Mar 31 2020 22:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21529 * 119.99685 * 0.02562 * 5 4 3 7 7 C 1.48067 * 120.00586 * 180.02562 * 5 4 3 8 8 C 1.39872 * 120.92957 * 359.97438 * 7 5 4 9 9 C 1.38078 * 119.02119 * 179.97438 * 8 7 5 10 10 N 1.31854 * 120.93999 * 0.02562 * 9 8 7 11 11 C 1.31755 * 122.07106 * 359.97438 * 10 9 8 12 12 C 1.38359 * 120.86892 * 359.73321 * 11 10 9 13 13 Cl 1.73607 * 120.51785 * 180.26432 * 12 11 10 14 14 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 15 15 N 1.47231 * 108.40580 * 292.38573 * 14 2 1 16 16 C 1.36930 * 121.03478 * 129.45775 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18179 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18409 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48497 * 109.46975 * 59.99586 * 20 18 16 22 22 H 1.48495 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47064 * 300.00118 * 20 18 16 24 24 C 1.47154 * 117.98080 * 309.48144 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.52276 * 24 15 14 26 26 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 27 27 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 28 28 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 29 29 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 30 30 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 31 31 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 32 32 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.48810 * 359.95348 * 8 7 5 34 34 H 1.07997 * 119.53603 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.56430 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.68145 * 52.09850 * 14 2 1 37 37 H 1.09001 * 109.68444 * 172.65236 * 14 2 1 38 38 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.68310 * 290.77594 * 24 15 14 40 40 H 1.09005 * 109.67869 * 170.26376 * 24 15 14 41 41 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 42 42 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5818 4.0125 0.6096 7 6 1.3951 4.1197 2.6218 8 6 0.5913 3.4592 3.5567 9 6 0.1572 4.1476 4.6721 10 7 0.4896 5.4093 4.8619 11 6 1.2444 6.0701 4.0077 12 6 1.7285 5.4565 2.8660 13 17 2.7280 6.3339 1.7500 14 6 2.0421 -0.7252 -1.2497 15 7 1.6959 -2.1516 -1.1340 16 6 1.0613 -2.8090 -2.1539 17 1 0.4490 -3.6729 -1.9412 18 6 1.2049 -2.3650 -3.4612 19 7 2.1856 -1.5448 -3.7738 20 14 0.0060 -2.9315 -4.7770 21 1 -1.3700 -2.5146 -4.4056 22 1 0.3739 -2.3190 -6.0788 23 1 0.0607 -4.4111 -4.8926 24 6 2.0522 -2.8497 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3633 0.5119 0.8912 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 3.1321 1.4402 -0.0022 31 1 1.6776 1.9568 -0.8888 32 1 1.0005 1.6610 1.8372 33 1 0.3140 2.4260 3.4080 34 1 -0.4642 3.6458 5.3990 35 1 1.4923 7.1028 4.2037 36 1 1.5705 -0.3042 -2.1376 37 1 3.1241 -0.6147 -1.3208 38 1 2.2857 -1.2342 -4.6873 39 1 3.1352 -2.9532 0.1774 40 1 1.5878 -3.8358 0.1252 41 1 0.4496 -2.0284 1.2995 42 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108238416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:41 Heat of formation + Delta-G solvation = -10.829844 kcal Electronic energy + Delta-G solvation = -27459.774456 eV Core-core repulsion = 23467.271123 eV Total energy + Delta-G solvation = -3992.503333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90651 -39.56377 -38.67654 -36.76258 -35.07877 -34.41370 -33.20517 -31.67976 -31.36658 -31.28895 -28.02673 -26.83160 -25.98014 -24.58142 -23.71887 -23.29213 -21.45595 -20.73882 -19.04541 -18.36669 -17.28276 -16.91604 -16.51444 -15.94180 -15.82414 -15.43408 -15.19575 -14.97987 -14.47519 -14.40038 -14.29250 -14.05747 -13.76986 -13.58018 -13.09124 -12.85360 -12.61925 -12.53197 -12.18733 -11.96628 -11.66854 -11.38796 -11.25644 -11.07218 -10.86725 -10.73283 -10.47766 -10.37702 -10.32390 -10.23129 -10.02978 -9.66262 -9.54322 -9.33756 -9.13318 -8.95389 -8.58779 -6.80106 -5.89486 -3.33012 0.25129 0.50069 1.80764 2.71452 2.98511 3.31269 3.37912 3.38429 3.41044 3.95245 4.13361 4.20049 4.33484 4.38868 4.44606 4.73857 5.04523 5.11340 5.27502 5.29543 5.37367 5.40319 5.45841 5.59409 5.84225 5.86593 5.92534 5.97130 6.00781 6.06217 6.22225 6.34362 6.45911 6.58209 6.67903 6.75857 7.00539 7.34589 7.39725 7.45124 7.65501 7.79365 8.11671 8.27629 9.05441 9.68566 10.25582 11.18566 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.002805 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.600800 B = 9981.025532 C =10716.746857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 C 0.140 3.860 4 N -0.706 5.706 5 C 0.546 3.454 6 O -0.510 6.510 7 C -0.076 4.076 8 C -0.129 4.129 9 C 0.097 3.903 10 N -0.457 5.457 11 C 0.108 3.892 12 C -0.045 4.045 13 Cl -0.015 7.015 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.282 1.282 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.385 6.385 27 H 0.040 0.960 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.401 0.599 33 H 0.149 0.851 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.257 0.743 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 11.025 16.282 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.017 3.983 4 N -0.358 5.358 5 C 0.330 3.670 6 O -0.386 6.386 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.059 4.059 10 N -0.167 5.167 11 C -0.051 4.051 12 C -0.076 4.076 13 Cl 0.014 6.986 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.305 6.305 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.237 0.763 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.673 12.052 16.240 20.554 hybrid contribution -0.610 -1.169 -1.437 1.950 sum -4.283 10.882 14.804 18.866 Atomic orbital electron populations 1.22214 0.95691 1.03356 1.00697 1.22567 0.93583 0.90505 0.89708 1.21443 1.00177 0.89933 0.86744 1.45875 1.52999 1.10988 1.25963 1.17967 0.81453 0.82299 0.85276 1.90882 1.36525 1.65617 1.45532 1.20409 0.98429 0.93412 0.96590 1.22451 0.96614 1.01705 0.94200 1.22866 0.97058 0.90074 0.95930 1.67692 1.10679 1.09284 1.28999 1.22863 0.93305 1.00609 0.88300 1.22295 0.97655 0.93002 0.94618 1.98441 1.66024 1.73980 1.60116 1.21301 0.97864 0.83963 0.93545 1.44001 1.68640 1.04902 1.13845 1.19109 1.21837 1.12237 0.85379 0.91431 1.25040 0.97253 1.00049 0.97097 1.69995 1.29167 1.36648 1.18691 0.86358 0.80962 0.78367 0.81023 1.20963 1.21510 1.20835 1.21596 0.97589 0.95235 0.87331 1.23046 0.98303 0.83043 0.98808 1.87807 1.72983 1.25915 1.43750 0.94096 0.91779 0.90673 0.90438 0.89670 0.76290 0.83370 0.81340 0.81216 0.88492 0.95182 0.93316 0.95631 0.92021 0.93351 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.92 37.16 0.29 -2.30 16 2 C 0.08 1.36 0.76 -90.47 -0.07 1.29 16 3 C 0.14 2.27 4.82 -4.04 -0.02 2.25 16 4 N -0.71 -9.49 5.11 -61.18 -0.31 -9.80 16 5 C 0.55 7.77 7.79 -12.23 -0.10 7.68 16 6 O -0.51 -8.85 14.17 5.34 0.08 -8.77 16 7 C -0.08 -0.89 5.91 -104.62 -0.62 -1.50 16 8 C -0.13 -1.10 9.61 -39.03 -0.38 -1.48 16 9 C 0.10 0.76 11.17 -17.60 -0.20 0.57 16 10 N -0.46 -4.37 10.33 -13.27 -0.14 -4.50 16 11 C 0.11 1.01 10.99 -17.54 -0.19 0.81 16 12 C -0.05 -0.51 6.38 -38.91 -0.25 -0.76 16 13 Cl -0.01 -0.18 26.24 -51.86 -1.36 -1.54 16 14 C 0.16 3.59 4.12 -3.49 -0.01 3.57 16 15 N -0.59 -13.92 2.57 -171.76 -0.44 -14.36 16 16 C -0.26 -6.65 9.65 -15.06 -0.15 -6.79 16 17 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 18 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 19 N -0.90 -25.17 11.14 55.49 0.62 -24.55 16 20 Si 0.90 20.88 29.59 -169.99 -5.03 15.85 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 C 0.11 2.15 6.73 -3.53 -0.02 2.13 16 25 C 0.05 0.74 6.60 37.31 0.25 0.99 16 26 O -0.38 -6.64 9.97 -35.23 -0.35 -7.00 16 27 H 0.04 0.53 6.88 -51.93 -0.36 0.17 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.33 6.11 -51.93 -0.32 1.01 16 30 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.40 4.54 5.35 -40.82 -0.22 4.33 16 33 H 0.15 0.94 6.54 -52.49 -0.34 0.59 16 34 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.10 2.41 6.14 -51.93 -0.32 2.09 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 41 H 0.05 0.75 6.25 -51.93 -0.32 0.43 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -30.95 354.21 -8.37 -39.32 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -5.22 Total: 3.54 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.54 Total: 6.48 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.27 Total: -53.22 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.28 Total: -15.77 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.36 Total: -1.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.95 -8.37 -39.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108238416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.488 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds