Wall clock time and date at job start Tue Mar 31 2020 22:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.55421 * 2 1 4 4 N 1.46502 * 109.47082 * 60.12625 * 3 2 1 5 5 C 1.34774 * 120.00289 * 180.02562 * 4 3 2 6 6 O 1.21529 * 119.99685 * 0.02562 * 5 4 3 7 7 C 1.48067 * 120.00586 * 180.02562 * 5 4 3 8 8 C 1.39872 * 120.92957 * 359.97438 * 7 5 4 9 9 C 1.38078 * 119.02119 * 179.97438 * 8 7 5 10 10 N 1.31854 * 120.93999 * 0.02562 * 9 8 7 11 11 C 1.31755 * 122.07106 * 359.97438 * 10 9 8 12 12 C 1.38359 * 120.86892 * 359.73321 * 11 10 9 13 13 Cl 1.73607 * 120.51785 * 180.26432 * 12 11 10 14 14 C 1.53294 * 109.51505 * 239.87181 * 2 1 3 15 15 N 1.47231 * 108.40580 * 292.38573 * 14 2 1 16 16 C 1.36930 * 121.03478 * 129.45775 * 15 14 2 17 17 H 1.08002 * 120.00530 * 206.18179 * 16 15 14 18 18 C 1.38816 * 119.99608 * 26.18409 * 16 15 14 19 19 N 1.31615 * 120.00526 * 16.88476 * 18 16 15 20 20 Si 1.86806 * 119.99896 * 196.88547 * 18 16 15 21 21 H 1.48497 * 109.46975 * 59.99586 * 20 18 16 22 22 H 1.48495 * 109.47304 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47064 * 300.00118 * 20 18 16 24 24 C 1.47154 * 117.98080 * 309.48144 * 15 14 2 25 25 C 1.53298 * 108.41825 * 50.52276 * 24 15 14 26 26 O 1.42959 * 109.51115 * 120.12529 * 2 1 3 27 27 H 1.09004 * 109.46996 * 299.87189 * 1 2 3 28 28 H 1.08996 * 109.47344 * 59.87067 * 1 2 3 29 29 H 1.09000 * 109.46808 * 179.87595 * 1 2 3 30 30 H 1.09002 * 109.47344 * 180.12437 * 3 2 1 31 31 H 1.08999 * 109.46999 * 300.12635 * 3 2 1 32 32 H 0.97000 * 120.00089 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.48810 * 359.95348 * 8 7 5 34 34 H 1.07997 * 119.53603 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.56430 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.68145 * 52.09850 * 14 2 1 37 37 H 1.09001 * 109.68444 * 172.65236 * 14 2 1 38 38 H 0.97002 * 120.00383 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.68310 * 290.77594 * 24 15 14 40 40 H 1.09005 * 109.67869 * 170.26376 * 24 15 14 41 41 H 1.09001 * 109.51044 * 67.59999 * 25 24 15 42 42 H 1.09000 * 109.51036 * 187.70217 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5572 2.1322 1.1977 5 6 1.8847 3.4220 1.4111 6 8 2.5818 4.0125 0.6096 7 6 1.3951 4.1197 2.6218 8 6 0.5913 3.4592 3.5567 9 6 0.1572 4.1476 4.6721 10 7 0.4896 5.4093 4.8619 11 6 1.2444 6.0701 4.0077 12 6 1.7285 5.4565 2.8660 13 17 2.7280 6.3339 1.7500 14 6 2.0421 -0.7252 -1.2497 15 7 1.6959 -2.1516 -1.1340 16 6 1.0613 -2.8090 -2.1539 17 1 0.4490 -3.6729 -1.9412 18 6 1.2049 -2.3650 -3.4612 19 7 2.1856 -1.5448 -3.7738 20 14 0.0060 -2.9315 -4.7770 21 1 -1.3700 -2.5146 -4.4056 22 1 0.3739 -2.3190 -6.0788 23 1 0.0607 -4.4111 -4.8926 24 6 2.0522 -2.8497 0.1114 25 6 1.5396 -2.0210 1.2949 26 8 2.0075 -0.6763 1.1655 27 1 -0.3633 0.5119 0.8912 28 1 -0.3634 0.5158 -0.8888 29 1 -0.3633 -1.0277 -0.0022 30 1 3.1321 1.4402 -0.0022 31 1 1.6776 1.9568 -0.8888 32 1 1.0005 1.6610 1.8372 33 1 0.3140 2.4260 3.4080 34 1 -0.4642 3.6458 5.3990 35 1 1.4923 7.1028 4.2037 36 1 1.5705 -0.3042 -2.1376 37 1 3.1241 -0.6147 -1.3208 38 1 2.2857 -1.2342 -4.6873 39 1 3.1352 -2.9532 0.1774 40 1 1.5878 -3.8358 0.1252 41 1 0.4496 -2.0284 1.2995 42 1 1.9106 -2.4484 2.2264 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108238416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:40 Heat of formation + Delta-G solvation = -31.716463 kcal Electronic energy + Delta-G solvation = -27460.680168 eV Core-core repulsion = 23467.271123 eV Total energy + Delta-G solvation = -3993.409045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.78287 -40.82382 -39.89460 -37.62048 -36.56942 -35.97357 -34.14456 -33.21797 -32.84415 -32.10557 -29.57355 -28.15858 -27.61701 -25.57824 -24.96710 -24.47947 -22.94392 -21.87281 -20.42199 -19.48767 -18.89857 -17.96993 -17.37584 -17.30990 -16.96321 -16.58065 -16.52167 -16.24431 -15.97673 -15.58984 -15.25766 -15.19574 -15.13814 -15.02809 -14.63459 -14.35429 -13.97113 -13.47006 -13.23293 -13.18392 -13.01623 -12.91862 -12.75206 -12.52309 -12.44071 -12.29359 -12.18220 -11.95492 -11.83345 -11.38505 -11.11620 -11.03882 -10.76716 -10.49982 -10.48147 -10.20380 -10.03860 -8.71537 -7.89424 -5.35945 -0.56762 -0.17144 0.98950 1.46762 1.48692 1.55492 1.74108 1.88807 2.48381 2.62711 2.78082 3.24509 3.34413 3.40282 3.50314 3.53610 3.70311 3.91126 4.00422 4.08267 4.11438 4.43209 4.47407 4.49812 4.54115 4.57543 4.65681 4.72551 4.75659 4.80011 4.97130 5.05021 5.12631 5.21595 5.25672 5.35968 5.37515 5.54341 5.61994 6.29352 6.36675 6.38859 6.67768 7.04347 7.07445 7.76918 8.30634 9.16009 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.002805 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.600800 B = 9981.025532 C =10716.746857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.094 3.906 3 C 0.151 3.849 4 N -0.693 5.693 5 C 0.545 3.455 6 O -0.549 6.549 7 C -0.095 4.095 8 C -0.118 4.118 9 C 0.106 3.894 10 N -0.468 5.468 11 C 0.111 3.889 12 C -0.061 4.061 13 Cl -0.036 7.036 14 C 0.167 3.833 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.074 0.926 18 C -0.049 4.049 19 N -0.936 5.936 20 Si 0.965 3.035 21 H -0.274 1.274 22 H -0.298 1.298 23 H -0.276 1.276 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.415 0.585 33 H 0.176 0.824 34 H 0.208 0.792 35 H 0.190 0.810 36 H 0.067 0.933 37 H -0.008 1.008 38 H 0.250 0.750 39 H 0.011 0.989 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 10.518 19.343 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.346 5.346 5 C 0.331 3.669 6 O -0.427 6.427 7 C -0.107 4.107 8 C -0.138 4.138 9 C -0.050 4.050 10 N -0.177 5.177 11 C -0.047 4.047 12 C -0.091 4.091 13 Cl -0.007 7.007 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.389 4.389 17 H 0.092 0.908 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.793 3.207 21 H -0.200 1.200 22 H -0.225 1.225 23 H -0.202 1.202 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.304 6.304 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.253 0.747 33 H 0.193 0.807 34 H 0.225 0.775 35 H 0.207 0.793 36 H 0.085 0.915 37 H 0.010 0.990 38 H 0.059 0.941 39 H 0.029 0.971 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.098 11.526 19.361 23.343 hybrid contribution 0.158 -1.093 -2.286 2.538 sum -5.940 10.434 17.075 20.874 Atomic orbital electron populations 1.22127 0.93768 1.03000 1.02251 1.22175 0.94743 0.90322 0.87437 1.21086 0.98984 0.89503 0.87803 1.45624 1.52976 1.10851 1.25199 1.18396 0.80638 0.82107 0.85731 1.90867 1.38257 1.66418 1.47116 1.20290 1.00310 0.93690 0.96386 1.22748 0.95036 1.02756 0.93257 1.23523 0.96104 0.89401 0.95977 1.67799 1.10736 1.10263 1.28933 1.23135 0.92683 1.01440 0.87402 1.22453 0.98390 0.93139 0.95150 1.98430 1.66807 1.74446 1.61020 1.21066 0.95366 0.84392 0.95145 1.44260 1.68635 1.05541 1.14673 1.19468 1.21312 1.12045 0.86086 0.90831 1.25777 0.98771 1.00763 0.99160 1.70171 1.31076 1.38447 1.18514 0.85372 0.79215 0.77965 0.78101 1.20005 1.22479 1.20184 1.21831 0.96977 0.96422 0.87242 1.23117 0.99230 0.81663 0.98407 1.87820 1.73317 1.26498 1.42735 0.90099 0.92683 0.91878 0.92413 0.90592 0.74674 0.80674 0.77520 0.79344 0.91510 0.99039 0.94097 0.97139 0.91021 0.91836 0.86317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.61 7.92 71.98 0.57 -4.04 16 2 C 0.09 3.26 0.76 -10.69 -0.01 3.25 16 3 C 0.15 4.92 4.82 86.38 0.42 5.34 16 4 N -0.69 -17.59 5.11 -465.75 -2.38 -19.97 16 5 C 0.55 15.16 7.79 86.85 0.68 15.83 16 6 O -0.55 -19.49 14.17 -3.81 -0.05 -19.54 16 7 C -0.10 -2.03 5.91 -19.87 -0.12 -2.15 16 8 C -0.12 -1.57 9.61 22.63 0.22 -1.35 16 9 C 0.11 1.21 11.17 84.65 0.95 2.16 16 10 N -0.47 -7.45 10.33 -195.91 -2.02 -9.47 16 11 C 0.11 1.86 10.99 84.73 0.93 2.79 16 12 C -0.06 -1.31 6.38 22.71 0.14 -1.17 16 13 Cl -0.04 -0.91 26.24 -2.72 -0.07 -0.98 16 14 C 0.17 7.78 4.12 86.34 0.36 8.13 16 15 N -0.61 -28.90 2.57 -697.32 -1.79 -30.69 16 16 C -0.26 -13.52 9.65 84.04 0.81 -12.71 16 17 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 18 C -0.05 -2.66 4.95 84.86 0.42 -2.24 16 19 N -0.94 -54.47 11.14 21.65 0.24 -54.23 16 20 Si 0.97 43.46 29.59 68.60 2.03 45.49 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 C 0.10 3.87 6.73 86.35 0.58 4.45 16 25 C 0.05 1.55 6.60 72.08 0.48 2.03 16 26 O -0.38 -12.41 9.97 -148.98 -1.49 -13.90 16 27 H 0.08 1.76 6.88 -2.38 -0.02 1.74 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 2.07 6.11 -2.39 -0.01 2.06 16 30 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 32 H 0.41 7.97 5.35 -92.71 -0.50 7.48 16 33 H 0.18 1.30 6.54 -2.91 -0.02 1.28 16 34 H 0.21 0.71 8.06 -2.91 -0.02 0.69 16 35 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.07 3.50 6.14 -2.39 -0.01 3.49 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.07 2.57 7.96 -2.38 -0.02 2.56 16 41 H 0.06 1.72 6.25 -2.39 -0.01 1.71 16 42 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -70.55 354.21 1.45 -69.10 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.57 Total: 13.86 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 6.42 Total: 20.32 kcal Atomic # 7 Polarization: -108.40 SS G_CDS: -5.96 Total: -114.36 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -1.54 Total: -33.44 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.07 Total: -0.98 kcal Total: -70.55 1.45 -69.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108238416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.383 kcal (2) G-P(sol) polarization free energy of solvation -70.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds