Wall clock time and date at job start Tue Mar 31 2020 22:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.51470 * 2 1 4 4 N 1.46499 * 109.47067 * 305.00335 * 3 2 1 5 5 C 1.34773 * 120.00016 * 179.72395 * 4 3 2 6 6 O 1.21523 * 119.99991 * 0.27093 * 5 4 3 7 7 C 1.48079 * 120.00101 * 180.27687 * 5 4 3 8 8 C 1.39866 * 120.93169 * 359.71440 * 7 5 4 9 9 C 1.38087 * 119.01817 * 179.80329 * 8 7 5 10 10 N 1.31848 * 120.93673 * 0.48308 * 9 8 7 11 11 C 1.31758 * 122.07623 * 359.74866 * 10 9 8 12 12 C 1.38360 * 120.86805 * 0.02562 * 11 10 9 13 13 Cl 1.73596 * 120.51824 * 179.97438 * 12 11 10 14 14 C 1.53288 * 109.51374 * 120.10523 * 2 1 3 15 15 N 1.47146 * 108.38816 * 67.67169 * 14 2 1 16 16 C 1.36944 * 120.98330 * 230.51540 * 15 14 2 17 17 H 1.08004 * 119.99584 * 153.32120 * 16 15 14 18 18 C 1.38803 * 119.99873 * 333.32756 * 16 15 14 19 19 N 1.31617 * 120.00250 * 343.54223 * 18 16 15 20 20 Si 1.86798 * 120.00036 * 163.54903 * 18 16 15 21 21 H 1.48499 * 109.47250 * 89.99495 * 20 18 16 22 22 H 1.48505 * 109.47283 * 209.99562 * 20 18 16 23 23 H 1.48500 * 109.47117 * 329.99457 * 20 18 16 24 24 C 1.47156 * 118.03532 * 50.53591 * 15 14 2 25 25 C 1.53297 * 108.38200 * 309.46666 * 24 15 14 26 26 O 1.42956 * 109.26540 * 52.27623 * 25 24 15 27 27 H 1.09001 * 109.47297 * 59.99771 * 1 2 3 28 28 H 1.08994 * 109.47234 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46877 * 299.99887 * 1 2 3 30 30 H 1.08998 * 109.47071 * 184.99958 * 3 2 1 31 31 H 1.09001 * 109.46660 * 64.99624 * 3 2 1 32 32 H 0.97000 * 120.00269 * 359.97438 * 4 3 2 33 33 H 1.08002 * 120.48884 * 0.02562 * 8 7 5 34 34 H 1.08001 * 119.52557 * 180.20748 * 9 8 7 35 35 H 1.07996 * 119.56633 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.68260 * 187.39654 * 14 2 1 37 37 H 1.09003 * 109.67948 * 307.91048 * 14 2 1 38 38 H 0.97005 * 120.00393 * 180.02562 * 19 18 16 39 39 H 1.08993 * 109.68346 * 69.18993 * 24 15 14 40 40 H 1.09001 * 109.67999 * 189.74715 * 24 15 14 41 41 H 1.08996 * 109.50823 * 172.22963 * 25 24 15 42 42 H 1.09009 * 109.51398 * 292.32558 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4422 0.0000 4 7 1.4575 2.1671 -1.1314 5 6 1.7626 3.4647 -1.3299 6 8 2.5257 4.0321 -0.5733 7 6 1.1678 4.1992 -2.4699 8 6 0.2919 3.5638 -3.3561 9 6 -0.2431 4.2875 -4.4034 10 7 0.0686 5.5565 -4.5794 11 6 0.8927 6.1931 -3.7721 12 6 1.4713 5.5466 -2.6943 13 17 2.5563 6.3939 -1.6369 14 6 2.0420 -0.7247 1.2499 15 7 1.6971 -2.1504 1.1339 16 6 1.0627 -2.8076 2.1542 17 1 0.4444 -3.6670 1.9409 18 6 1.2145 -2.3691 3.4624 19 7 2.1964 -1.5493 3.7720 20 14 0.0250 -2.9427 4.7836 21 1 0.5389 -4.1899 5.4046 22 1 -0.1059 -1.8899 5.8227 23 1 -1.3035 -3.2043 4.1739 24 6 2.0543 -2.8494 -0.1109 25 6 1.5416 -2.0211 -1.2946 26 8 2.0075 -0.6757 -1.1658 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.1274 1.4426 -0.0896 31 1 1.7530 1.9297 0.9314 32 1 0.8486 1.7142 -1.7355 33 1 0.0348 2.5236 -3.2210 34 1 -0.9230 3.8060 -5.0906 35 1 1.1202 7.2329 -3.9546 36 1 3.1240 -0.6135 1.3214 37 1 1.5703 -0.3034 2.1377 38 1 2.3027 -1.2431 4.6863 39 1 3.1374 -2.9520 -0.1764 40 1 1.5900 -3.8355 -0.1244 41 1 1.9140 -2.4479 -2.2258 42 1 0.4516 -2.0300 -1.3003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108238417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:44 Heat of formation + Delta-G solvation = -10.210778 kcal Electronic energy + Delta-G solvation = -27460.647803 eV Core-core repulsion = 23468.171314 eV Total energy + Delta-G solvation = -3992.476488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91154 -39.57133 -38.67762 -36.76564 -35.09895 -34.42277 -33.20533 -31.66565 -31.36743 -31.28281 -28.02868 -26.85232 -25.98571 -24.58923 -23.72425 -23.29270 -21.46262 -20.72629 -19.03497 -18.38859 -17.27997 -16.92081 -16.51956 -15.94152 -15.82873 -15.42944 -15.21611 -14.98847 -14.47918 -14.39562 -14.29427 -14.06030 -13.78591 -13.57258 -13.09956 -12.82364 -12.62123 -12.52774 -12.18928 -11.98485 -11.67527 -11.38914 -11.25719 -11.07872 -10.87945 -10.71708 -10.47847 -10.37993 -10.31911 -10.23477 -10.03665 -9.65413 -9.55034 -9.33971 -9.12366 -8.96635 -8.59184 -6.79206 -5.89770 -3.33735 0.24861 0.49734 1.80596 2.71206 2.98236 3.30301 3.38009 3.38991 3.40718 3.94951 4.14675 4.19652 4.32281 4.38661 4.43864 4.73431 5.04293 5.10826 5.27611 5.29065 5.37288 5.40126 5.45914 5.57861 5.83953 5.86278 5.92353 5.96844 6.00527 6.05988 6.21728 6.34369 6.45741 6.58139 6.67353 6.75822 7.00434 7.34338 7.39737 7.44231 7.65792 7.80004 8.11066 8.27847 9.05485 9.68447 10.25522 11.18293 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.002810 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.850484 B = 9960.721013 C =10626.034573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 C 0.140 3.860 4 N -0.707 5.707 5 C 0.546 3.454 6 O -0.510 6.510 7 C -0.077 4.077 8 C -0.129 4.129 9 C 0.097 3.903 10 N -0.457 5.457 11 C 0.108 3.892 12 C -0.045 4.045 13 Cl -0.015 7.015 14 C 0.161 3.839 15 N -0.590 5.590 16 C -0.256 4.256 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.385 6.385 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.400 0.600 33 H 0.148 0.852 34 H 0.170 0.830 35 H 0.171 0.829 36 H 0.030 0.970 37 H 0.097 0.903 38 H 0.256 0.744 39 H 0.026 0.974 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.775 11.245 -15.869 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.017 3.983 4 N -0.360 5.360 5 C 0.330 3.670 6 O -0.385 6.385 7 C -0.088 4.088 8 C -0.150 4.150 9 C -0.059 4.059 10 N -0.167 5.167 11 C -0.051 4.051 12 C -0.076 4.076 13 Cl 0.015 6.985 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.385 4.385 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.058 0.942 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.237 0.763 33 H 0.166 0.834 34 H 0.187 0.813 35 H 0.188 0.812 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.099 0.901 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.313 12.278 -15.833 20.495 hybrid contribution -0.546 -1.186 1.416 1.926 sum -4.859 11.092 -14.417 18.828 Atomic orbital electron populations 1.22213 0.95753 1.03373 1.00618 1.22564 0.93565 0.90535 0.89714 1.21430 0.98988 0.89435 0.88485 1.45929 1.48641 1.10231 1.31164 1.17968 0.82213 0.82299 0.84506 1.90881 1.34520 1.67402 1.45710 1.20412 0.98086 0.93327 0.97019 1.22449 0.96032 1.01815 0.94699 1.22868 0.97444 0.89735 0.95866 1.67690 1.11893 1.10190 1.26878 1.22865 0.92439 1.00665 0.89094 1.22295 0.96833 0.93016 0.95430 1.98440 1.60741 1.75616 1.63746 1.21274 0.97894 0.83973 0.93467 1.43993 1.68643 1.04876 1.13893 1.19135 1.21517 1.12545 0.85301 0.91442 1.25051 0.97244 1.00004 0.97148 1.70003 1.29194 1.36734 1.18562 0.86301 0.80930 0.77979 0.81586 1.21304 1.21437 1.20448 1.21600 0.97582 0.95238 0.87336 1.23044 0.98302 0.83048 0.98804 1.87820 1.73056 1.25837 1.43707 0.94170 0.90629 0.91736 0.90404 0.89593 0.76313 0.83402 0.81335 0.81209 0.95182 0.88532 0.93377 0.95625 0.92006 0.90141 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 7.87 37.16 0.29 -2.28 16 2 C 0.08 1.36 0.78 -90.47 -0.07 1.29 16 3 C 0.14 2.26 4.85 -4.04 -0.02 2.24 16 4 N -0.71 -9.50 5.15 -61.17 -0.32 -9.81 16 5 C 0.55 7.77 7.79 -12.22 -0.10 7.68 16 6 O -0.51 -8.84 14.17 5.35 0.08 -8.76 16 7 C -0.08 -0.89 5.91 -104.62 -0.62 -1.50 16 8 C -0.13 -1.11 9.61 -39.03 -0.38 -1.48 16 9 C 0.10 0.76 11.17 -17.60 -0.20 0.57 16 10 N -0.46 -4.36 10.33 -13.27 -0.14 -4.50 16 11 C 0.11 1.01 10.99 -17.54 -0.19 0.82 16 12 C -0.05 -0.51 6.38 -38.90 -0.25 -0.76 16 13 Cl -0.01 -0.18 26.23 -51.86 -1.36 -1.54 16 14 C 0.16 3.60 4.11 -3.54 -0.01 3.59 16 15 N -0.59 -13.92 2.57 -171.84 -0.44 -14.36 16 16 C -0.26 -6.63 9.65 -15.06 -0.15 -6.77 16 17 H 0.07 1.71 7.88 -52.48 -0.41 1.30 16 18 C 0.00 0.12 4.95 -17.43 -0.09 0.04 16 19 N -0.90 -25.15 11.14 55.49 0.62 -24.54 16 20 Si 0.90 20.84 29.58 -169.99 -5.03 15.81 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 C 0.11 2.15 6.74 -3.53 -0.02 2.13 16 25 C 0.05 0.75 6.60 37.31 0.25 0.99 16 26 O -0.38 -6.69 10.17 -35.23 -0.36 -7.05 16 27 H 0.04 0.51 6.58 -51.93 -0.34 0.17 16 28 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.40 4.52 5.13 -40.82 -0.21 4.31 16 33 H 0.15 0.93 6.54 -52.49 -0.34 0.59 16 34 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 38 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.75 6.26 -51.92 -0.32 0.43 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -31.01 353.96 -8.36 -39.37 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.20 Total: 3.52 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: -1.55 Total: 6.53 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.28 Total: -53.21 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.28 Total: -15.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.36 Total: -1.54 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.01 -8.36 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108238417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.157 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds