Wall clock time and date at job start Tue Mar 31 2020 22:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21558 * 120.00310 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.00249 * 179.97438 * 5 4 3 8 8 C 1.39566 * 120.55217 * 359.71733 * 7 5 4 9 9 N 1.31662 * 120.59276 * 179.70512 * 8 7 5 10 10 C 1.31941 * 121.89436 * 0.58390 * 9 8 7 11 11 C 1.38425 * 121.06636 * 359.70655 * 10 9 8 12 12 Cl 1.73592 * 120.36455 * 180.02562 * 11 10 9 13 13 C 1.38520 * 119.27451 * 359.97438 * 11 10 9 14 14 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 15 15 N 1.47155 * 108.38177 * 292.37811 * 14 2 1 16 16 C 1.36941 * 120.97883 * 129.48751 * 15 14 2 17 17 H 1.08003 * 119.99321 * 206.20415 * 16 15 14 18 18 C 1.38813 * 120.00092 * 26.20602 * 16 15 14 19 19 N 1.31617 * 120.00396 * 16.93122 * 18 16 15 20 20 Si 1.86802 * 119.99573 * 196.92891 * 18 16 15 21 21 H 1.48505 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47152 * 120.00095 * 20 18 16 23 23 H 1.48505 * 109.47028 * 240.00035 * 20 18 16 24 24 C 1.47148 * 118.03767 * 309.45938 * 15 14 2 25 25 C 1.53302 * 108.38216 * 50.53749 * 24 15 14 26 26 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 27 27 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 28 28 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 30 30 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 31 31 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 32 32 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.70050 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.46617 * 179.67414 * 10 9 8 35 35 H 1.07998 * 120.85917 * 179.97438 * 13 11 10 36 36 H 1.09006 * 109.67764 * 52.09570 * 14 2 1 37 37 H 1.08995 * 109.68252 * 172.61426 * 14 2 1 38 38 H 0.96988 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.68089 * 290.82070 * 24 15 14 40 40 H 1.08994 * 109.68449 * 170.26152 * 24 15 14 41 41 H 1.09003 * 109.51104 * 67.62096 * 25 24 15 42 42 H 1.09003 * 109.51218 * 187.72433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5794 4.0133 0.6098 7 6 1.3909 4.1191 2.6190 8 6 0.5842 3.4536 3.5432 9 7 0.1516 4.0716 4.6223 10 6 0.4477 5.3334 4.8690 11 6 1.2376 6.0651 3.9990 12 17 1.6164 7.7241 4.3419 13 6 1.7232 5.4586 2.8522 14 6 2.0420 -0.7257 -1.2495 15 7 1.6959 -2.1512 -1.1327 16 6 1.0615 -2.8083 -2.1530 17 1 0.4485 -3.6718 -1.9404 18 6 1.2064 -2.3648 -3.4604 19 7 2.1885 -1.5461 -3.7726 20 14 0.0073 -2.9299 -4.7766 21 1 -0.9976 -3.8413 -4.1724 22 1 -0.6808 -1.7498 -5.3589 23 1 0.7475 -3.6485 -5.8448 24 6 2.0522 -2.8497 0.1124 25 6 1.5397 -2.0205 1.2956 26 8 2.0075 -0.6759 1.1657 27 1 -0.3634 0.5121 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1309 1.4414 -0.0018 31 1 1.6765 1.9568 -0.8889 32 1 0.9980 1.6609 1.8365 33 1 0.3160 2.4213 3.3739 34 1 0.0673 5.8032 5.7641 35 1 2.3413 6.0055 2.1556 36 1 1.5703 -0.3049 -2.1375 37 1 3.1239 -0.6146 -1.3210 38 1 2.2894 -1.2359 -4.6860 39 1 3.1352 -2.9530 0.1784 40 1 1.5873 -3.8355 0.1263 41 1 0.4497 -2.0278 1.3003 42 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108278250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:36 Heat of formation + Delta-G solvation = -20.357989 kcal Electronic energy + Delta-G solvation = -27159.692694 eV Core-core repulsion = 23166.776190 eV Total energy + Delta-G solvation = -3992.916504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99267 -39.57825 -38.69338 -37.09558 -35.14154 -34.41838 -32.98856 -32.32902 -31.33036 -31.13735 -28.01890 -26.79225 -25.95934 -24.43350 -23.96864 -23.28686 -21.43480 -20.75602 -18.99609 -18.36419 -17.37644 -17.19748 -16.84851 -15.95513 -15.76427 -15.51818 -15.22265 -15.03568 -14.42972 -14.41341 -14.08893 -13.91033 -13.65546 -13.57198 -13.09206 -13.03631 -12.87553 -12.61237 -12.46914 -11.99922 -11.69574 -11.65516 -11.25420 -11.08081 -10.88796 -10.71819 -10.57977 -10.37199 -10.28234 -10.27829 -10.03888 -9.84403 -9.60456 -9.49470 -9.13546 -8.99221 -8.59031 -6.79692 -5.89542 -3.32916 0.12030 0.55339 1.50729 2.58096 3.01324 3.30272 3.38671 3.38697 3.40166 3.81306 4.15532 4.18589 4.32656 4.38576 4.42525 4.61529 4.86145 5.07112 5.28277 5.36194 5.39591 5.44709 5.49623 5.60037 5.84200 5.86588 5.87328 5.92628 6.00537 6.07161 6.22048 6.33992 6.45388 6.58432 6.68788 6.76720 7.01007 7.24304 7.39734 7.42711 7.66716 7.80061 8.07676 8.27862 9.05829 9.68839 10.25641 11.18539 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.002389 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.681256 B =11717.035766 C =12253.294623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.139 3.861 4 N -0.706 5.706 5 C 0.558 3.442 6 O -0.533 6.533 7 C -0.166 4.166 8 C 0.139 3.861 9 N -0.469 5.469 10 C 0.133 3.867 11 C -0.098 4.098 12 Cl -0.047 7.047 13 C -0.009 4.009 14 C 0.160 3.840 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.069 0.931 18 C 0.004 3.996 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.289 1.289 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.385 6.385 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.402 0.598 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.255 0.745 39 H 0.026 0.974 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 12.690 16.742 21.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C 0.016 3.984 4 N -0.358 5.358 5 C 0.343 3.657 6 O -0.410 6.410 7 C -0.172 4.172 8 C -0.020 4.020 9 N -0.177 5.177 10 C -0.025 4.025 11 C -0.127 4.127 12 Cl -0.018 7.018 13 C -0.036 4.036 14 C 0.033 3.967 15 N -0.314 5.314 16 C -0.383 4.383 17 H 0.087 0.913 18 C -0.195 4.195 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.018 4.018 25 C -0.032 4.032 26 O -0.304 6.304 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.238 0.762 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.177 0.823 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.067 0.933 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.694 12.889 16.714 21.427 hybrid contribution -0.370 -0.092 -1.203 1.262 sum -4.064 12.796 15.511 20.515 Atomic orbital electron populations 1.22223 0.95662 1.03421 1.00737 1.22566 0.93616 0.90469 0.89737 1.21461 1.00206 0.90015 0.86736 1.45893 1.52850 1.10997 1.26023 1.17867 0.80797 0.82084 0.84988 1.90813 1.37798 1.66171 1.46249 1.21109 1.02531 0.95275 0.98245 1.23193 0.90671 1.00085 0.88027 1.67878 1.21459 1.08989 1.19376 1.23035 0.92070 0.89460 0.97904 1.22021 1.03589 0.88682 0.98438 1.98401 1.93240 1.15470 1.94713 1.21694 0.94393 0.93127 0.94425 1.21290 0.97881 0.83986 0.93553 1.44005 1.68622 1.04924 1.13852 1.19198 1.21608 1.12175 0.85346 0.91337 1.25042 0.97289 1.00089 0.97111 1.70015 1.29167 1.36838 1.18501 0.86228 0.80731 0.78048 0.81793 1.20243 1.21445 1.21633 1.21601 0.97588 0.95253 0.87327 1.23048 0.98343 0.83000 0.98795 1.87804 1.72973 1.25954 1.43701 0.94027 0.91762 0.90637 0.90396 0.89623 0.76180 0.81486 0.81256 0.82292 0.88476 0.95178 0.93442 0.95622 0.92000 0.93308 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 7.91 37.16 0.29 -2.30 16 2 C 0.08 1.34 0.76 -90.47 -0.07 1.27 16 3 C 0.14 2.21 4.82 -4.04 -0.02 2.19 16 4 N -0.71 -9.27 5.11 -61.25 -0.31 -9.58 16 5 C 0.56 7.64 7.78 -12.33 -0.10 7.55 16 6 O -0.53 -9.13 16.42 5.32 0.09 -9.04 16 7 C -0.17 -1.82 5.89 -104.82 -0.62 -2.44 16 8 C 0.14 1.33 10.71 -17.13 -0.18 1.14 16 9 N -0.47 -4.56 10.34 -12.88 -0.13 -4.70 16 10 C 0.13 1.10 10.97 -17.44 -0.19 0.91 16 11 C -0.10 -0.86 6.34 -39.41 -0.25 -1.11 16 12 Cl -0.05 -0.37 28.98 -51.86 -1.50 -1.87 16 13 C -0.01 -0.10 9.52 -38.83 -0.37 -0.47 16 14 C 0.16 3.56 4.12 -3.53 -0.01 3.55 16 15 N -0.59 -13.87 2.56 -171.82 -0.44 -14.31 16 16 C -0.25 -6.57 9.65 -15.06 -0.15 -6.72 16 17 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 19 N -0.90 -25.10 11.14 55.49 0.62 -24.48 16 20 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.11 2.14 6.74 -3.53 -0.02 2.12 16 25 C 0.05 0.75 6.60 37.31 0.25 0.99 16 26 O -0.38 -6.61 9.97 -35.23 -0.35 -6.96 16 27 H 0.04 0.53 6.87 -51.93 -0.36 0.18 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.33 6.11 -51.93 -0.32 1.01 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.40 4.46 5.27 -40.82 -0.22 4.25 16 33 H 0.17 1.27 6.42 -52.49 -0.34 0.93 16 34 H 0.17 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.16 1.61 7.74 -52.49 -0.41 1.20 16 36 H 0.10 2.40 6.14 -51.93 -0.32 2.08 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 41 H 0.05 0.76 6.25 -51.93 -0.32 0.44 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 358.05 15.07 5.40 5.40 Total: -1.00 -30.33 358.05 -8.39 -38.72 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.20 Total: 4.31 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.53 Total: 6.70 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.27 Total: -53.08 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.26 Total: -16.00 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.33 -8.39 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108278250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.360 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds