Wall clock time and date at job start Tue Mar 31 2020 22:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21558 * 120.00310 * 359.97438 * 5 4 3 7 7 C 1.47846 * 120.00249 * 179.97438 * 5 4 3 8 8 C 1.39566 * 120.55217 * 359.71733 * 7 5 4 9 9 N 1.31662 * 120.59276 * 179.70512 * 8 7 5 10 10 C 1.31941 * 121.89436 * 0.58390 * 9 8 7 11 11 C 1.38425 * 121.06636 * 359.70655 * 10 9 8 12 12 Cl 1.73592 * 120.36455 * 180.02562 * 11 10 9 13 13 C 1.38520 * 119.27451 * 359.97438 * 11 10 9 14 14 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 15 15 N 1.47155 * 108.38177 * 292.37811 * 14 2 1 16 16 C 1.36941 * 120.97883 * 129.48751 * 15 14 2 17 17 H 1.08003 * 119.99321 * 206.20415 * 16 15 14 18 18 C 1.38813 * 120.00092 * 26.20602 * 16 15 14 19 19 N 1.31617 * 120.00396 * 16.93122 * 18 16 15 20 20 Si 1.86802 * 119.99573 * 196.92891 * 18 16 15 21 21 H 1.48505 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47152 * 120.00095 * 20 18 16 23 23 H 1.48505 * 109.47028 * 240.00035 * 20 18 16 24 24 C 1.47148 * 118.03767 * 309.45938 * 15 14 2 25 25 C 1.53302 * 108.38216 * 50.53749 * 24 15 14 26 26 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 27 27 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 28 28 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 30 30 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 31 31 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 32 32 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.70050 * 359.97438 * 8 7 5 34 34 H 1.08003 * 119.46617 * 179.67414 * 10 9 8 35 35 H 1.07998 * 120.85917 * 179.97438 * 13 11 10 36 36 H 1.09006 * 109.67764 * 52.09570 * 14 2 1 37 37 H 1.08995 * 109.68252 * 172.61426 * 14 2 1 38 38 H 0.96988 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.68089 * 290.82070 * 24 15 14 40 40 H 1.08994 * 109.68449 * 170.26152 * 24 15 14 41 41 H 1.09003 * 109.51104 * 67.62096 * 25 24 15 42 42 H 1.09003 * 109.51218 * 187.72433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5794 4.0133 0.6098 7 6 1.3909 4.1191 2.6190 8 6 0.5842 3.4536 3.5432 9 7 0.1516 4.0716 4.6223 10 6 0.4477 5.3334 4.8690 11 6 1.2376 6.0651 3.9990 12 17 1.6164 7.7241 4.3419 13 6 1.7232 5.4586 2.8522 14 6 2.0420 -0.7257 -1.2495 15 7 1.6959 -2.1512 -1.1327 16 6 1.0615 -2.8083 -2.1530 17 1 0.4485 -3.6718 -1.9404 18 6 1.2064 -2.3648 -3.4604 19 7 2.1885 -1.5461 -3.7726 20 14 0.0073 -2.9299 -4.7766 21 1 -0.9976 -3.8413 -4.1724 22 1 -0.6808 -1.7498 -5.3589 23 1 0.7475 -3.6485 -5.8448 24 6 2.0522 -2.8497 0.1124 25 6 1.5397 -2.0205 1.2956 26 8 2.0075 -0.6759 1.1657 27 1 -0.3634 0.5121 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1309 1.4414 -0.0018 31 1 1.6765 1.9568 -0.8889 32 1 0.9980 1.6609 1.8365 33 1 0.3160 2.4213 3.3739 34 1 0.0673 5.8032 5.7641 35 1 2.3413 6.0055 2.1556 36 1 1.5703 -0.3049 -2.1375 37 1 3.1239 -0.6146 -1.3210 38 1 2.2894 -1.2359 -4.6860 39 1 3.1352 -2.9530 0.1784 40 1 1.5873 -3.8355 0.1263 41 1 0.4497 -2.0278 1.3003 42 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108278250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:35 Heat of formation + Delta-G solvation = -40.385774 kcal Electronic energy + Delta-G solvation = -27160.561164 eV Core-core repulsion = 23166.776190 eV Total energy + Delta-G solvation = -3993.784974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86534 -40.83546 -39.92081 -37.74886 -36.60364 -35.99486 -33.86863 -33.41000 -33.19159 -32.11310 -29.56441 -28.12152 -27.57021 -25.44093 -24.95106 -24.73788 -22.93944 -21.87670 -20.39426 -19.44217 -18.89885 -18.15116 -17.80096 -17.36508 -16.94515 -16.59449 -16.53536 -16.25538 -16.02025 -15.59155 -15.32826 -15.26013 -15.13870 -14.65661 -14.49843 -14.32318 -13.98747 -13.72166 -13.44769 -13.17424 -13.14092 -12.91446 -12.80375 -12.52591 -12.41994 -12.33180 -12.10882 -11.94223 -11.85357 -11.58928 -11.10074 -11.08477 -10.78089 -10.68533 -10.49190 -10.30498 -10.09242 -8.70734 -7.89056 -5.35396 -0.64080 -0.18521 0.83808 1.45501 1.48463 1.57876 1.63252 1.92412 2.48600 2.56213 2.79017 3.12669 3.25476 3.48262 3.50353 3.54416 3.62168 3.84959 3.92117 4.01776 4.11948 4.17549 4.44047 4.48949 4.57729 4.62857 4.68446 4.73239 4.74908 4.80891 4.98361 5.06072 5.12735 5.15866 5.22570 5.26029 5.38836 5.55572 5.63286 6.30298 6.35936 6.38265 6.54469 7.01643 7.08304 7.77550 8.31038 9.16649 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022618 B = 0.002389 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.681256 B =11717.035766 C =12253.294623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.694 5.694 5 C 0.561 3.439 6 O -0.574 6.574 7 C -0.179 4.179 8 C 0.148 3.852 9 N -0.480 5.480 10 C 0.144 3.856 11 C -0.099 4.099 12 Cl -0.038 7.038 13 C -0.015 4.015 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.256 4.256 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.296 1.296 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.415 0.585 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.153 0.847 36 H 0.067 0.933 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.012 0.988 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 12.842 19.533 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.052 3.948 3 C 0.024 3.976 4 N -0.346 5.346 5 C 0.348 3.652 6 O -0.454 6.454 7 C -0.185 4.185 8 C -0.011 4.011 9 N -0.188 5.188 10 C -0.013 4.013 11 C -0.127 4.127 12 Cl -0.009 7.009 13 C -0.042 4.042 14 C 0.039 3.961 15 N -0.331 5.331 16 C -0.386 4.386 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.224 1.224 24 C -0.025 4.025 25 C -0.024 4.024 26 O -0.303 6.303 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.205 0.795 34 H 0.216 0.784 35 H 0.171 0.829 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.714 13.018 19.565 24.185 hybrid contribution 0.308 -0.138 -1.984 2.012 sum -5.407 12.880 17.581 22.455 Atomic orbital electron populations 1.22141 0.93824 1.03035 1.02290 1.22187 0.94731 0.90380 0.87457 1.21123 0.99121 0.89506 0.87826 1.45657 1.52803 1.10921 1.25260 1.18231 0.79844 0.81805 0.85294 1.90795 1.39722 1.67018 1.47907 1.20827 1.04306 0.95596 0.97743 1.23449 0.89496 1.00786 0.87322 1.67987 1.21870 1.09632 1.19317 1.23530 0.90632 0.88949 0.98234 1.22017 1.03551 0.89192 0.97988 1.98409 1.93193 1.14700 1.94578 1.21738 0.94426 0.93075 0.94966 1.21066 0.95474 0.84368 0.95145 1.44259 1.68614 1.05585 1.14641 1.19529 1.21068 1.11937 0.86055 0.90878 1.25765 0.98801 1.00820 0.99136 1.70178 1.31028 1.38581 1.18424 0.85254 0.78888 0.77491 0.79104 1.18770 1.21716 1.22370 1.21829 0.97010 0.96395 0.87222 1.23112 0.99206 0.81704 0.98408 1.87819 1.73288 1.26488 1.42755 0.90178 0.92525 0.91896 0.92197 0.90376 0.74638 0.79501 0.78372 0.82943 0.91423 0.98891 0.94091 0.97047 0.91045 0.91909 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 7.91 71.98 0.57 -4.10 16 2 C 0.09 3.22 0.76 -10.70 -0.01 3.21 16 3 C 0.15 4.79 4.82 86.38 0.42 5.20 16 4 N -0.69 -17.40 5.11 -465.98 -2.38 -19.78 16 5 C 0.56 15.10 7.78 86.79 0.68 15.78 16 6 O -0.57 -20.10 16.42 -3.90 -0.06 -20.17 16 7 C -0.18 -3.68 5.89 -19.99 -0.12 -3.80 16 8 C 0.15 2.42 10.71 85.04 0.91 3.33 16 9 N -0.48 -7.85 10.34 -194.67 -2.01 -9.86 16 10 C 0.14 1.94 10.97 84.72 0.93 2.87 16 11 C -0.10 -1.52 6.34 22.38 0.14 -1.38 16 12 Cl -0.04 -0.52 28.98 -2.72 -0.08 -0.60 16 13 C -0.02 -0.29 9.52 22.76 0.22 -0.07 16 14 C 0.17 7.70 4.12 86.35 0.36 8.06 16 15 N -0.61 -28.86 2.56 -697.53 -1.79 -30.65 16 16 C -0.26 -13.34 9.65 84.03 0.81 -12.53 16 17 H 0.07 3.68 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 19 N -0.94 -54.24 11.14 21.65 0.24 -54.00 16 20 Si 0.96 43.49 29.59 68.60 2.03 45.52 16 21 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.10 3.89 6.74 86.36 0.58 4.47 16 25 C 0.05 1.57 6.60 72.08 0.48 2.05 16 26 O -0.38 -12.47 9.97 -148.98 -1.49 -13.95 16 27 H 0.08 1.78 6.87 -2.39 -0.02 1.76 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 2.08 6.11 -2.38 -0.01 2.06 16 30 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.41 8.06 5.27 -92.71 -0.49 7.57 16 33 H 0.19 2.15 6.42 -2.91 -0.02 2.13 16 34 H 0.20 1.43 8.06 -2.91 -0.02 1.40 16 35 H 0.15 3.10 7.74 -2.91 -0.02 3.08 16 36 H 0.07 3.53 6.14 -2.38 -0.01 3.51 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 38 H 0.25 14.11 8.31 -92.72 -0.77 13.34 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 41 H 0.06 1.74 6.25 -2.39 -0.01 1.72 16 42 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -67.76 358.05 1.42 -66.34 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.58 Total: 16.33 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.38 Total: 20.81 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -5.94 Total: -114.29 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -1.55 Total: -34.12 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -67.76 1.42 -66.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108278250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.957 kcal (2) G-P(sol) polarization free energy of solvation -67.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds