Wall clock time and date at job start Tue Mar 31 2020 22:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21548 * 120.00310 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.00018 * 179.97438 * 5 4 3 8 8 C 1.39562 * 120.55317 * 0.02562 * 7 5 4 9 9 N 1.31658 * 120.59650 * 179.97438 * 8 7 5 10 10 C 1.31950 * 121.89483 * 0.02562 * 9 8 7 11 11 C 1.38429 * 121.06143 * 0.02562 * 10 9 8 12 12 Cl 1.73599 * 120.36400 * 179.97438 * 11 10 9 13 13 C 1.38511 * 119.27665 * 359.66123 * 11 10 9 14 14 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 15 15 N 1.47166 * 108.41716 * 67.64184 * 14 2 1 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 2 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 2 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 28 28 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 29 29 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 30 30 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 31 31 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 32 32 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.70296 * 359.97438 * 8 7 5 34 34 H 1.07995 * 119.47205 * 180.02562 * 10 9 8 35 35 H 1.08000 * 120.86902 * 180.33897 * 13 11 10 36 36 H 1.09003 * 109.68354 * 187.34399 * 14 2 1 37 37 H 1.09005 * 109.68141 * 307.89260 * 14 2 1 38 38 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 40 40 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 41 41 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 42 42 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5332 4.0300 -0.5765 7 6 1.1860 4.1932 -2.4788 8 6 0.3101 3.5528 -3.3565 9 7 -0.2124 4.2031 -4.3751 10 6 0.0654 5.4717 -4.6088 11 6 0.9257 6.1779 -3.7857 12 17 1.2790 7.8462 -4.1105 13 6 1.4965 5.5406 -2.6964 14 6 2.0420 -0.7252 1.2496 15 7 1.6967 -2.1511 1.1339 16 6 1.0620 -2.8079 2.1542 17 1 0.4485 -3.6710 1.9417 18 6 1.2071 -2.3645 3.4615 19 7 0.3278 -2.7139 4.3764 20 14 2.6505 -1.2719 3.9223 21 1 2.2554 0.1532 3.7873 22 1 3.0489 -1.5442 5.3267 23 1 3.7946 -1.5561 3.0193 24 6 2.0520 -2.8498 -0.1115 25 6 1.5395 -2.0209 -1.2949 26 8 2.0074 -0.6763 -1.1656 27 1 -0.3634 -1.0277 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7525 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8533 1.7132 -1.7382 33 1 0.0584 2.5144 -3.1987 34 1 -0.3857 5.9671 -5.4558 35 1 2.1670 6.0684 -2.0343 36 1 3.1241 -0.6148 1.3207 37 1 1.5704 -0.3041 2.1376 38 1 0.4294 -2.4043 5.2901 39 1 1.5871 -3.8355 -0.1249 40 1 3.1350 -2.9538 -0.1778 41 1 1.9112 -2.4478 -2.2264 42 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108278251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:38 Heat of formation + Delta-G solvation = -13.274520 kcal Electronic energy + Delta-G solvation = -27280.867616 eV Core-core repulsion = 23288.258274 eV Total energy + Delta-G solvation = -3992.609342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07833 -39.79738 -38.89230 -37.14547 -35.34167 -34.64153 -33.06678 -32.47389 -31.64296 -31.29534 -28.51114 -26.99013 -26.08852 -24.53118 -24.04738 -23.66690 -21.38309 -20.86527 -19.28532 -18.60943 -17.48462 -17.27912 -16.94871 -16.23860 -15.88547 -15.67476 -15.45658 -15.22403 -14.70805 -14.46510 -14.30756 -14.05658 -13.90370 -13.73823 -13.40418 -13.10389 -12.88067 -12.54655 -12.42284 -12.39989 -11.95329 -11.74212 -11.62197 -11.46810 -11.15079 -10.93973 -10.67229 -10.43913 -10.34913 -10.25766 -9.95836 -9.80202 -9.57750 -9.55875 -9.47620 -9.16597 -8.64393 -7.09623 -6.05707 -3.43309 0.05168 0.49304 1.45546 2.48972 2.87890 3.23234 3.30584 3.42632 3.43972 3.74827 3.94453 4.12609 4.25317 4.31956 4.42034 4.54486 4.65372 4.79008 5.08158 5.13720 5.22944 5.31540 5.32995 5.41805 5.64566 5.68662 5.73201 5.78708 5.81306 5.91966 5.97148 6.13172 6.17947 6.26763 6.38623 6.42100 6.54289 6.68342 7.18258 7.28236 7.53653 7.77160 7.94869 8.19880 8.77268 9.58326 9.94079 11.09721 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002579 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.771630 B =10852.807899 C =11532.885695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 C 0.135 3.865 4 N -0.708 5.708 5 C 0.560 3.440 6 O -0.532 6.532 7 C -0.168 4.168 8 C 0.139 3.861 9 N -0.468 5.468 10 C 0.134 3.866 11 C -0.098 4.098 12 Cl -0.046 7.046 13 C -0.009 4.009 14 C 0.108 3.892 15 N -0.603 5.603 16 C -0.262 4.262 17 H 0.089 0.911 18 C 0.026 3.974 19 N -0.905 5.905 20 Si 0.878 3.122 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.043 3.957 26 O -0.380 6.380 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.403 0.597 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.159 0.841 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.502 15.238 -18.437 23.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 C 0.011 3.989 4 N -0.359 5.359 5 C 0.345 3.655 6 O -0.410 6.410 7 C -0.173 4.173 8 C -0.019 4.019 9 N -0.176 5.176 10 C -0.023 4.023 11 C -0.127 4.127 12 Cl -0.017 7.017 13 C -0.036 4.036 14 C -0.019 4.019 15 N -0.327 5.327 16 C -0.390 4.390 17 H 0.106 0.894 18 C -0.174 4.174 19 N -0.547 5.547 20 Si 0.708 3.292 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.014 4.014 25 C -0.034 4.034 26 O -0.300 6.300 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.240 0.760 33 H 0.185 0.815 34 H 0.188 0.812 35 H 0.177 0.823 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.431 15.362 -18.395 23.970 hybrid contribution 0.967 0.777 0.879 1.521 sum 0.535 16.140 -17.516 23.824 Atomic orbital electron populations 1.22242 0.94775 1.04125 1.01171 1.22258 0.94225 0.90251 0.88627 1.21468 0.99144 0.89415 0.88875 1.45878 1.48703 1.10481 1.30886 1.17872 0.81460 0.81977 0.84209 1.90811 1.35743 1.67815 1.46593 1.21067 1.02011 0.95170 0.99050 1.23185 0.90168 1.00166 0.88398 1.67885 1.22957 1.08111 1.18680 1.23054 0.92199 0.89737 0.97329 1.22023 1.02830 0.88540 0.99326 1.98404 1.93936 1.14454 1.94928 1.21690 0.94997 0.92850 0.94045 1.21921 0.98180 0.85966 0.95784 1.44299 1.69252 1.03754 1.15444 1.18878 1.22328 1.13112 0.84649 0.89371 1.25248 0.97882 0.98636 0.95588 1.69814 1.34204 1.47634 1.03069 0.87062 0.85188 0.79855 0.77112 1.21369 1.22871 1.19439 1.21635 0.97861 0.95689 0.86178 1.23099 0.98867 0.82585 0.98876 1.87847 1.72859 1.26168 1.43084 0.90041 0.91433 0.93524 0.89555 0.90247 0.76009 0.81503 0.81188 0.82293 0.94541 0.89858 0.92592 0.90969 0.95091 0.89550 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 7.86 37.15 0.29 -2.23 16 2 C 0.09 1.43 0.78 -90.47 -0.07 1.36 16 3 C 0.13 2.00 4.85 -4.04 -0.02 1.98 16 4 N -0.71 -8.67 5.15 -61.25 -0.32 -8.98 16 5 C 0.56 7.24 7.78 -12.33 -0.10 7.15 16 6 O -0.53 -8.69 16.42 5.32 0.09 -8.60 16 7 C -0.17 -1.74 5.89 -104.82 -0.62 -2.35 16 8 C 0.14 1.25 10.71 -17.13 -0.18 1.07 16 9 N -0.47 -4.34 10.34 -12.88 -0.13 -4.48 16 10 C 0.13 1.05 10.97 -17.43 -0.19 0.86 16 11 C -0.10 -0.81 6.34 -39.41 -0.25 -1.06 16 12 Cl -0.05 -0.34 28.98 -51.86 -1.50 -1.84 16 13 C -0.01 -0.09 9.52 -38.83 -0.37 -0.46 16 14 C 0.11 2.23 3.05 -3.53 -0.01 2.22 16 15 N -0.60 -13.42 2.35 -171.81 -0.40 -13.83 16 16 C -0.26 -6.91 10.10 -15.06 -0.15 -7.06 16 17 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 18 C 0.03 0.72 5.26 -17.43 -0.09 0.63 16 19 N -0.90 -26.75 13.97 55.49 0.78 -25.97 16 20 Si 0.88 21.67 24.29 -169.99 -4.13 17.54 16 21 H -0.29 -6.75 6.58 56.52 0.37 -6.37 16 22 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 23 H -0.27 -6.60 6.55 56.52 0.37 -6.23 16 24 C 0.11 2.05 6.73 -3.53 -0.02 2.03 16 25 C 0.04 0.65 6.60 37.31 0.25 0.90 16 26 O -0.38 -6.05 10.17 -35.23 -0.36 -6.41 16 27 H 0.08 1.40 6.12 -51.93 -0.32 1.08 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.05 0.55 6.59 -51.93 -0.34 0.21 16 30 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.40 4.09 5.07 -40.82 -0.21 3.88 16 33 H 0.17 1.15 6.42 -52.48 -0.34 0.82 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.53 7.74 -52.49 -0.41 1.12 16 36 H 0.04 0.78 6.86 -51.93 -0.36 0.42 16 37 H 0.08 1.86 4.60 -51.93 -0.24 1.63 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 1.27 7.96 -51.93 -0.41 0.86 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 0.80 6.26 -51.93 -0.32 0.47 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -31.50 351.11 -7.33 -38.83 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.10 Total: 3.43 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.54 Total: 5.03 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: -0.08 Total: -53.26 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.27 Total: -15.01 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.13 Total: 17.54 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.50 -7.33 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108278251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.552 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds