Wall clock time and date at job start Tue Mar 31 2020 22:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21548 * 120.00310 * 359.97438 * 5 4 3 7 7 C 1.47850 * 120.00018 * 179.97438 * 5 4 3 8 8 C 1.39562 * 120.55317 * 0.02562 * 7 5 4 9 9 N 1.31658 * 120.59650 * 179.97438 * 8 7 5 10 10 C 1.31950 * 121.89483 * 0.02562 * 9 8 7 11 11 C 1.38429 * 121.06143 * 0.02562 * 10 9 8 12 12 Cl 1.73599 * 120.36400 * 179.97438 * 11 10 9 13 13 C 1.38511 * 119.27665 * 359.66123 * 11 10 9 14 14 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 15 15 N 1.47166 * 108.41716 * 67.64184 * 14 2 1 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 2 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 2 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 28 28 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 29 29 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 30 30 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 31 31 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 32 32 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 33 33 H 1.08005 * 119.70296 * 359.97438 * 8 7 5 34 34 H 1.07995 * 119.47205 * 180.02562 * 10 9 8 35 35 H 1.08000 * 120.86902 * 180.33897 * 13 11 10 36 36 H 1.09003 * 109.68354 * 187.34399 * 14 2 1 37 37 H 1.09005 * 109.68141 * 307.89260 * 14 2 1 38 38 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 40 40 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 41 41 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 42 42 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5332 4.0300 -0.5765 7 6 1.1860 4.1932 -2.4788 8 6 0.3101 3.5528 -3.3565 9 7 -0.2124 4.2031 -4.3751 10 6 0.0654 5.4717 -4.6088 11 6 0.9257 6.1779 -3.7857 12 17 1.2790 7.8462 -4.1105 13 6 1.4965 5.5406 -2.6964 14 6 2.0420 -0.7252 1.2496 15 7 1.6967 -2.1511 1.1339 16 6 1.0620 -2.8079 2.1542 17 1 0.4485 -3.6710 1.9417 18 6 1.2071 -2.3645 3.4615 19 7 0.3278 -2.7139 4.3764 20 14 2.6505 -1.2719 3.9223 21 1 2.2554 0.1532 3.7873 22 1 3.0489 -1.5442 5.3267 23 1 3.7946 -1.5561 3.0193 24 6 2.0520 -2.8498 -0.1115 25 6 1.5395 -2.0209 -1.2949 26 8 2.0074 -0.6763 -1.1656 27 1 -0.3634 -1.0277 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7525 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8533 1.7132 -1.7382 33 1 0.0584 2.5144 -3.1987 34 1 -0.3857 5.9671 -5.4558 35 1 2.1670 6.0684 -2.0343 36 1 3.1241 -0.6148 1.3207 37 1 1.5704 -0.3041 2.1376 38 1 0.4294 -2.4043 5.2901 39 1 1.5871 -3.8355 -0.1249 40 1 3.1350 -2.9538 -0.1778 41 1 1.9112 -2.4478 -2.2264 42 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108278251.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:38 Heat of formation + Delta-G solvation = -35.736952 kcal Electronic energy + Delta-G solvation = -27281.841660 eV Core-core repulsion = 23288.258274 eV Total energy + Delta-G solvation = -3993.583386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90163 -40.99234 -39.99496 -37.75818 -36.75213 -36.10478 -33.90922 -33.63682 -33.46258 -32.16699 -29.96483 -28.23431 -27.61274 -25.44978 -25.30391 -24.75170 -22.83299 -21.92138 -20.68803 -19.54045 -19.03197 -18.18712 -17.83701 -17.65754 -17.11772 -16.66150 -16.59735 -16.31195 -16.18987 -15.75521 -15.58443 -15.40556 -15.22969 -14.75498 -14.41898 -14.29343 -14.04333 -13.91683 -13.73483 -13.53804 -13.16146 -13.08047 -13.03337 -12.69825 -12.38557 -12.33632 -12.22309 -12.00477 -11.67298 -11.58699 -11.23595 -11.09745 -11.04389 -10.72439 -10.49156 -10.34149 -10.11735 -8.94735 -8.19850 -5.51969 -0.65632 -0.19466 0.82892 1.24671 1.38571 1.44684 1.60906 1.87536 2.36294 2.54572 2.66153 2.98117 3.11035 3.22756 3.49065 3.50488 3.59459 3.73152 3.84287 3.85199 3.90235 4.14446 4.29987 4.42536 4.45089 4.51882 4.57154 4.63819 4.67228 4.72355 4.73355 4.82065 4.89017 5.05351 5.12669 5.14486 5.19882 5.37214 5.78882 6.08889 6.23563 6.31683 6.53482 6.82020 6.97609 7.54576 7.95555 8.99404 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002579 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.771630 B =10852.807899 C =11532.885695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 C 0.141 3.859 4 N -0.697 5.697 5 C 0.564 3.436 6 O -0.572 6.572 7 C -0.180 4.180 8 C 0.147 3.853 9 N -0.481 5.481 10 C 0.144 3.856 11 C -0.099 4.099 12 Cl -0.038 7.038 13 C -0.015 4.015 14 C 0.101 3.899 15 N -0.616 5.616 16 C -0.241 4.241 17 H 0.062 0.938 18 C -0.028 4.028 19 N -0.952 5.952 20 Si 0.931 3.069 21 H -0.272 1.272 22 H -0.312 1.312 23 H -0.267 1.267 24 C 0.104 3.896 25 C 0.050 3.950 26 O -0.376 6.376 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.415 0.585 33 H 0.189 0.811 34 H 0.199 0.801 35 H 0.154 0.846 36 H 0.031 0.969 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.125 0.875 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 16.579 -21.566 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.060 3.940 3 C 0.016 3.984 4 N -0.349 5.349 5 C 0.350 3.650 6 O -0.452 6.452 7 C -0.185 4.185 8 C -0.011 4.011 9 N -0.189 5.189 10 C -0.013 4.013 11 C -0.128 4.128 12 Cl -0.009 7.009 13 C -0.042 4.042 14 C -0.025 4.025 15 N -0.341 5.341 16 C -0.370 4.370 17 H 0.080 0.920 18 C -0.223 4.223 19 N -0.598 5.598 20 Si 0.761 3.239 21 H -0.199 1.199 22 H -0.241 1.241 23 H -0.191 1.191 24 C -0.021 4.021 25 C -0.027 4.027 26 O -0.295 6.295 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.254 0.746 33 H 0.205 0.795 34 H 0.215 0.785 35 H 0.171 0.829 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.143 0.857 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.539 16.711 -21.598 27.314 hybrid contribution 0.983 0.338 1.720 2.009 sum 0.444 17.049 -19.878 26.192 Atomic orbital electron populations 1.22195 0.93720 1.03286 1.02676 1.21966 0.94826 0.90476 0.86768 1.21216 0.98797 0.88651 0.89691 1.45672 1.48626 1.10317 1.30292 1.18186 0.80674 0.81804 0.84287 1.90793 1.37617 1.68605 1.48186 1.20822 1.03428 0.95360 0.98913 1.23459 0.89056 1.00947 0.87627 1.67987 1.23348 1.08740 1.18803 1.23525 0.91078 0.89317 0.97424 1.22022 1.02817 0.88971 0.98978 1.98411 1.93906 1.13778 1.94819 1.21740 0.95061 0.92872 0.94483 1.21934 0.97678 0.85436 0.97425 1.44404 1.69188 1.04781 1.15732 1.18830 1.20728 1.11780 0.85649 0.91979 1.25762 0.99881 1.00859 0.95837 1.69926 1.36099 1.50389 1.03349 0.86186 0.82500 0.79315 0.75942 1.19873 1.24056 1.19149 1.21886 0.98141 0.96381 0.85694 1.23156 0.99370 0.81517 0.98653 1.87872 1.72961 1.26502 1.42167 0.91971 0.92365 0.89671 0.90165 0.90970 0.74551 0.79461 0.78462 0.82872 0.95162 0.91929 0.92930 0.90789 0.94889 0.85738 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.57 7.86 71.98 0.57 -4.00 16 2 C 0.10 3.11 0.78 -10.70 -0.01 3.10 16 3 C 0.14 3.96 4.85 86.38 0.42 4.38 16 4 N -0.70 -15.47 5.15 -465.98 -2.40 -17.87 16 5 C 0.56 13.77 7.78 86.79 0.68 14.44 16 6 O -0.57 -18.42 16.42 -3.87 -0.06 -18.49 16 7 C -0.18 -3.38 5.89 -19.99 -0.12 -3.50 16 8 C 0.15 2.21 10.71 85.04 0.91 3.12 16 9 N -0.48 -7.40 10.34 -194.67 -2.01 -9.41 16 10 C 0.14 1.82 10.97 84.72 0.93 2.75 16 11 C -0.10 -1.43 6.34 22.38 0.14 -1.28 16 12 Cl -0.04 -0.49 28.98 -2.72 -0.08 -0.57 16 13 C -0.01 -0.26 9.52 22.76 0.22 -0.04 16 14 C 0.10 4.10 3.05 86.35 0.26 4.36 16 15 N -0.62 -27.13 2.35 -697.49 -1.64 -28.78 16 16 C -0.24 -12.90 10.10 84.03 0.85 -12.05 16 17 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 18 C -0.03 -1.59 5.26 84.86 0.45 -1.15 16 19 N -0.95 -58.06 13.97 21.65 0.30 -57.76 16 20 Si 0.93 45.72 24.29 68.60 1.67 47.38 16 21 H -0.27 -12.57 6.58 99.48 0.65 -11.92 16 22 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 23 H -0.27 -12.78 6.55 99.48 0.65 -12.13 16 24 C 0.10 3.62 6.73 86.35 0.58 4.20 16 25 C 0.05 1.34 6.60 72.08 0.48 1.81 16 26 O -0.38 -10.77 10.17 -148.98 -1.52 -12.28 16 27 H 0.06 2.03 6.12 -2.38 -0.01 2.01 16 28 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 29 H 0.08 1.72 6.59 -2.39 -0.02 1.71 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.42 6.98 5.07 -92.71 -0.47 6.51 16 33 H 0.19 1.86 6.42 -2.91 -0.02 1.84 16 34 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.15 2.87 7.74 -2.91 -0.02 2.85 16 36 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 37 H 0.06 2.79 4.60 -2.38 -0.01 2.78 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.07 2.53 7.96 -2.39 -0.02 2.51 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.06 1.59 6.26 -2.39 -0.01 1.58 16 Total: -1.00 -69.55 351.11 1.10 -68.45 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.50 Total: 13.18 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.35 Total: 16.15 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -5.75 Total: -113.82 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -1.58 Total: -30.77 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.67 Total: 47.38 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -0.08 Total: -0.57 kcal Total: -69.55 1.10 -68.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108278251.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.713 kcal (2) G-P(sol) polarization free energy of solvation -69.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds