Wall clock time and date at job start Tue Mar 31 2020 22:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21518 * 120.00503 * 0.02562 * 5 4 3 7 7 C 1.48115 * 119.99949 * 179.97438 * 5 4 3 8 8 C 1.39350 * 119.70610 * 179.97438 * 7 5 4 9 9 C 1.38529 * 119.07600 * 179.97438 * 8 7 5 10 10 C 1.38770 * 118.47599 * 0.02562 * 9 8 7 11 11 Cl 1.73601 * 120.33393 * 180.02562 * 10 9 8 12 12 C 1.38727 * 119.32765 * 359.97438 * 10 9 8 13 13 N 1.31485 * 120.87577 * 359.75005 * 12 10 9 14 14 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 15 15 N 1.47166 * 108.41716 * 67.64184 * 14 2 1 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 2 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 2 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 28 28 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 29 29 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 30 30 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 31 31 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 32 32 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.46004 * 359.95715 * 8 7 5 34 34 H 1.07994 * 120.75993 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.55869 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.68354 * 187.34399 * 14 2 1 37 37 H 1.09005 * 109.68141 * 307.89260 * 14 2 1 38 38 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 40 40 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 41 41 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 42 42 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5337 4.0296 -0.5772 7 6 1.1850 4.1945 -2.4808 8 6 1.5097 5.5344 -2.6834 9 6 0.9539 6.2066 -3.7596 10 6 0.0906 5.5149 -4.5974 11 17 -0.6327 6.3099 -5.9607 12 6 -0.1878 4.1814 -4.3350 13 7 0.3587 3.5672 -3.3089 14 6 2.0420 -0.7252 1.2496 15 7 1.6967 -2.1511 1.1339 16 6 1.0620 -2.8079 2.1542 17 1 0.4485 -3.6710 1.9417 18 6 1.2071 -2.3645 3.4615 19 7 0.3278 -2.7139 4.3764 20 14 2.6505 -1.2719 3.9223 21 1 2.2554 0.1532 3.7873 22 1 3.0489 -1.5442 5.3267 23 1 3.7946 -1.5561 3.0193 24 6 2.0520 -2.8498 -0.1115 25 6 1.5395 -2.0209 -1.2949 26 8 2.0074 -0.6763 -1.1656 27 1 -0.3634 -1.0277 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7525 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8533 1.7132 -1.7382 33 1 2.1851 6.0418 -2.0105 34 1 1.1865 7.2453 -3.9419 35 1 -0.8595 3.6396 -4.9844 36 1 3.1241 -0.6148 1.3207 37 1 1.5704 -0.3041 2.1376 38 1 0.4294 -2.4043 5.2901 39 1 1.5871 -3.8355 -0.1249 40 1 3.1350 -2.9538 -0.1778 41 1 1.9112 -2.4478 -2.2264 42 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108353922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:28 Heat of formation + Delta-G solvation = -13.554238 kcal Electronic energy + Delta-G solvation = -27238.476489 eV Core-core repulsion = 23245.855018 eV Total energy + Delta-G solvation = -3992.621471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.02454 -39.70526 -38.78879 -37.16647 -35.24133 -34.57258 -33.15283 -32.14774 -31.59990 -31.39519 -28.44086 -26.91400 -26.01810 -24.54672 -24.01648 -23.60908 -21.37003 -20.75634 -19.22281 -18.52345 -17.44646 -17.20478 -16.84899 -16.17910 -15.74893 -15.45701 -15.42822 -15.14142 -14.64942 -14.38038 -14.33605 -14.01297 -13.84090 -13.82374 -13.38730 -12.94464 -12.86638 -12.47320 -12.36837 -12.27040 -11.88116 -11.83183 -11.54336 -11.40586 -11.08622 -10.87000 -10.57549 -10.43675 -10.39545 -10.21485 -10.00678 -9.73725 -9.53265 -9.51475 -9.40960 -9.02342 -8.59729 -7.04913 -6.02112 -3.39289 0.02939 0.61071 1.42329 2.41444 2.94527 3.26680 3.41176 3.45284 3.47264 3.73731 4.02786 4.12612 4.28626 4.41431 4.45799 4.64511 4.72444 5.13275 5.16462 5.22292 5.29078 5.29677 5.38965 5.40347 5.71394 5.75690 5.80141 5.85874 5.89353 5.99120 6.05095 6.21894 6.26894 6.38407 6.43732 6.48515 6.60885 6.75227 7.08759 7.50848 7.62170 7.81354 8.06924 8.23588 8.81256 9.62218 9.98466 11.13390 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002538 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.470316 B =11030.698171 C =11631.535161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 C 0.132 3.868 4 N -0.693 5.693 5 C 0.565 3.435 6 O -0.534 6.534 7 C 0.089 3.911 8 C -0.100 4.100 9 C -0.072 4.072 10 C -0.074 4.074 11 Cl -0.048 7.048 12 C 0.116 3.884 13 N -0.441 5.441 14 C 0.108 3.892 15 N -0.603 5.603 16 C -0.261 4.261 17 H 0.089 0.911 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.878 3.122 21 H -0.286 1.286 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.112 3.888 25 C 0.044 3.956 26 O -0.379 6.379 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.415 0.585 33 H 0.159 0.841 34 H 0.153 0.847 35 H 0.173 0.827 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.086 0.914 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 16.396 -19.844 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 C 0.008 3.992 4 N -0.344 5.344 5 C 0.349 3.651 6 O -0.411 6.411 7 C -0.049 4.049 8 C -0.121 4.121 9 C -0.098 4.098 10 C -0.103 4.103 11 Cl -0.019 7.019 12 C -0.045 4.045 13 N -0.152 5.152 14 C -0.018 4.018 15 N -0.328 5.328 16 C -0.388 4.388 17 H 0.106 0.894 18 C -0.174 4.174 19 N -0.548 5.548 20 Si 0.708 3.292 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.194 1.194 24 C -0.013 4.013 25 C -0.034 4.034 26 O -0.298 6.298 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.253 0.747 33 H 0.177 0.823 34 H 0.171 0.829 35 H 0.190 0.810 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.732 15.985 -19.149 24.955 hybrid contribution 0.436 1.188 -0.025 1.266 sum -0.296 17.173 -19.174 25.742 Atomic orbital electron populations 1.22237 0.94760 1.04014 1.01322 1.22236 0.94285 0.90220 0.88490 1.21490 0.99098 0.89574 0.89019 1.45847 1.47887 1.10327 1.30332 1.17757 0.81423 0.82249 0.83689 1.90808 1.35944 1.68114 1.46220 1.21402 0.95701 0.92454 0.95344 1.22177 0.98810 0.93993 0.97088 1.21590 0.94197 1.01191 0.92823 1.22379 0.99670 0.95251 0.93036 1.98405 1.81744 1.79673 1.42065 1.22857 0.97339 0.89965 0.94336 1.67742 1.06969 1.37693 1.02826 1.21925 0.98131 0.85950 0.95838 1.44299 1.69263 1.03781 1.15429 1.18883 1.22245 1.13056 0.84654 0.89391 1.25245 0.97917 0.98655 0.95587 1.69817 1.34233 1.47719 1.03045 0.87055 0.85214 0.79891 0.77034 1.21356 1.22921 1.19435 1.21636 0.97824 0.95667 0.86207 1.23087 0.98887 0.82637 0.98782 1.87856 1.72764 1.26104 1.43121 0.90169 0.91586 0.93176 0.89616 0.90310 0.74748 0.82292 0.82904 0.80980 0.94574 0.89888 0.92634 0.91006 0.95119 0.89618 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 7.86 37.15 0.29 -2.46 16 2 C 0.09 1.56 0.78 -90.47 -0.07 1.49 16 3 C 0.13 2.12 4.85 -4.04 -0.02 2.10 16 4 N -0.69 -9.88 5.18 -61.17 -0.32 -10.20 16 5 C 0.57 8.09 7.81 -12.21 -0.10 8.00 16 6 O -0.53 -8.96 16.32 5.35 0.09 -8.87 16 7 C 0.09 1.04 6.75 -83.01 -0.56 0.48 16 8 C -0.10 -0.92 9.63 -39.06 -0.38 -1.30 16 9 C -0.07 -0.51 9.97 -39.28 -0.39 -0.90 16 10 C -0.07 -0.55 6.35 -39.20 -0.25 -0.80 16 11 Cl -0.05 -0.31 28.99 -51.86 -1.50 -1.81 16 12 C 0.12 0.96 10.98 -17.52 -0.19 0.77 16 13 N -0.44 -4.75 9.54 -9.77 -0.09 -4.84 16 14 C 0.11 2.31 3.05 -3.53 -0.01 2.30 16 15 N -0.60 -13.83 2.35 -171.81 -0.40 -14.23 16 16 C -0.26 -7.01 10.10 -15.06 -0.15 -7.16 16 17 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 18 C 0.03 0.71 5.26 -17.43 -0.09 0.62 16 19 N -0.91 -27.12 13.97 55.49 0.78 -26.34 16 20 Si 0.88 22.02 24.29 -169.99 -4.13 17.89 16 21 H -0.29 -6.86 6.58 56.52 0.37 -6.49 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 23 H -0.27 -6.70 6.55 56.52 0.37 -6.33 16 24 C 0.11 2.14 6.73 -3.53 -0.02 2.11 16 25 C 0.04 0.70 6.60 37.31 0.25 0.95 16 26 O -0.38 -6.52 10.17 -35.23 -0.36 -6.88 16 27 H 0.08 1.47 6.12 -51.93 -0.32 1.15 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.05 0.71 6.59 -51.93 -0.34 0.36 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.41 5.56 6.33 -40.82 -0.26 5.30 16 33 H 0.16 1.35 7.64 -52.49 -0.40 0.95 16 34 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 35 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.04 0.79 6.86 -51.93 -0.36 0.44 16 37 H 0.08 1.91 4.60 -51.93 -0.24 1.67 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 0.86 6.26 -51.93 -0.32 0.53 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -31.54 353.32 -7.54 -39.08 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.23 Total: 4.70 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: -1.69 Total: 6.18 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -0.04 Total: -55.61 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.27 Total: -15.75 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.13 Total: 17.89 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.50 Total: -1.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.54 -7.54 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108353922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.530 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds