Wall clock time and date at job start Tue Mar 31 2020 22:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.55650 * 2 1 4 4 N 1.46498 * 109.46984 * 304.87668 * 3 2 1 5 5 C 1.34777 * 119.99954 * 179.97438 * 4 3 2 6 6 O 1.21518 * 120.00503 * 0.02562 * 5 4 3 7 7 C 1.48115 * 119.99949 * 179.97438 * 5 4 3 8 8 C 1.39350 * 119.70610 * 179.97438 * 7 5 4 9 9 C 1.38529 * 119.07600 * 179.97438 * 8 7 5 10 10 C 1.38770 * 118.47599 * 0.02562 * 9 8 7 11 11 Cl 1.73601 * 120.33393 * 180.02562 * 10 9 8 12 12 C 1.38727 * 119.32765 * 359.97438 * 10 9 8 13 13 N 1.31485 * 120.87577 * 359.75005 * 12 10 9 14 14 C 1.53290 * 109.51407 * 120.12931 * 2 1 3 15 15 N 1.47166 * 108.41716 * 67.64184 * 14 2 1 16 16 C 1.36933 * 120.99120 * 230.54983 * 15 14 2 17 17 H 1.08000 * 120.00180 * 153.70650 * 16 15 14 18 18 C 1.38813 * 120.00094 * 333.70170 * 16 15 14 19 19 N 1.31620 * 119.99900 * 160.02568 * 18 16 15 20 20 Si 1.86798 * 119.99867 * 340.02586 * 18 16 15 21 21 H 1.48500 * 109.46937 * 91.85831 * 20 18 16 22 22 H 1.48502 * 109.47208 * 211.85857 * 20 18 16 23 23 H 1.48499 * 109.47296 * 331.85455 * 20 18 16 24 24 C 1.47155 * 118.02599 * 50.46688 * 15 14 2 25 25 C 1.53300 * 108.41547 * 309.53664 * 24 15 14 26 26 O 1.42958 * 109.22465 * 52.28134 * 25 24 15 27 27 H 1.09005 * 109.47423 * 180.12984 * 1 2 3 28 28 H 1.09004 * 109.47263 * 300.12500 * 1 2 3 29 29 H 1.08996 * 109.47425 * 60.12348 * 1 2 3 30 30 H 1.08997 * 109.47054 * 64.87287 * 3 2 1 31 31 H 1.08993 * 109.47324 * 184.87343 * 3 2 1 32 32 H 0.97002 * 119.99884 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.46004 * 359.95715 * 8 7 5 34 34 H 1.07994 * 120.75993 * 179.97438 * 9 8 7 35 35 H 1.07999 * 119.55869 * 179.97438 * 12 10 9 36 36 H 1.09003 * 109.68354 * 187.34399 * 14 2 1 37 37 H 1.09005 * 109.68141 * 307.89260 * 14 2 1 38 38 H 0.96999 * 119.99776 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.68037 * 189.78791 * 24 15 14 40 40 H 1.09003 * 109.67969 * 69.27666 * 24 15 14 41 41 H 1.09000 * 109.50966 * 172.20794 * 25 24 15 42 42 H 1.09003 * 109.50501 * 292.30491 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.4613 2.1662 -1.1331 5 6 1.7717 3.4622 -1.3349 6 8 2.5337 4.0296 -0.5772 7 6 1.1850 4.1945 -2.4808 8 6 1.5097 5.5344 -2.6834 9 6 0.9539 6.2066 -3.7596 10 6 0.0906 5.5149 -4.5974 11 17 -0.6327 6.3099 -5.9607 12 6 -0.1878 4.1814 -4.3350 13 7 0.3587 3.5672 -3.3089 14 6 2.0420 -0.7252 1.2496 15 7 1.6967 -2.1511 1.1339 16 6 1.0620 -2.8079 2.1542 17 1 0.4485 -3.6710 1.9417 18 6 1.2071 -2.3645 3.4615 19 7 0.3278 -2.7139 4.3764 20 14 2.6505 -1.2719 3.9223 21 1 2.2554 0.1532 3.7873 22 1 3.0489 -1.5442 5.3267 23 1 3.7946 -1.5561 3.0193 24 6 2.0520 -2.8498 -0.1115 25 6 1.5395 -2.0209 -1.2949 26 8 2.0074 -0.6763 -1.1656 27 1 -0.3634 -1.0277 0.0023 28 1 -0.3634 0.5158 0.8889 29 1 -0.3634 0.5119 -0.8910 30 1 1.7525 1.9302 0.9304 31 1 3.1285 1.4414 -0.0873 32 1 0.8533 1.7132 -1.7382 33 1 2.1851 6.0418 -2.0105 34 1 1.1865 7.2453 -3.9419 35 1 -0.8595 3.6396 -4.9844 36 1 3.1241 -0.6148 1.3207 37 1 1.5704 -0.3041 2.1376 38 1 0.4294 -2.4043 5.2901 39 1 1.5871 -3.8355 -0.1249 40 1 3.1350 -2.9538 -0.1778 41 1 1.9112 -2.4478 -2.2264 42 1 0.4495 -2.0291 -1.3000 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108353922.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:27 Heat of formation + Delta-G solvation = -35.945451 kcal Electronic energy + Delta-G solvation = -27239.447445 eV Core-core repulsion = 23245.855018 eV Total energy + Delta-G solvation = -3993.592427 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86365 -40.99465 -39.93906 -37.73817 -36.74037 -36.09370 -33.93527 -33.63842 -33.22963 -32.27564 -29.98150 -28.25466 -27.61223 -25.43468 -25.30737 -24.73946 -22.84689 -21.89310 -20.69963 -19.53070 -19.03249 -18.15609 -17.69199 -17.66842 -17.12064 -16.69729 -16.45422 -16.27808 -16.13813 -15.74095 -15.55317 -15.40171 -15.16404 -14.85258 -14.43301 -14.25479 -14.05011 -13.92033 -13.64786 -13.55566 -13.10357 -13.07302 -13.02316 -12.71237 -12.40335 -12.37305 -12.22983 -12.01154 -11.64491 -11.55832 -11.24381 -11.06229 -11.05904 -10.77632 -10.49529 -10.34461 -10.05105 -8.95240 -8.19813 -5.52136 -0.70037 -0.00175 0.84438 1.25302 1.38447 1.45185 1.49642 1.89086 2.36656 2.59876 2.66076 2.93279 3.00763 3.22627 3.56260 3.59841 3.72743 3.75980 3.83972 3.88630 3.91359 4.28457 4.40365 4.43469 4.50668 4.53164 4.56917 4.61747 4.67273 4.70700 4.78327 4.81899 4.88322 5.03653 5.12349 5.20256 5.24339 5.33592 5.78443 6.08703 6.21992 6.24388 6.56507 6.81384 6.99106 7.54122 7.95458 8.99422 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.002538 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.470316 B =11030.698171 C =11631.535161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 C 0.138 3.862 4 N -0.689 5.689 5 C 0.565 3.435 6 O -0.565 6.565 7 C 0.065 3.935 8 C -0.099 4.099 9 C -0.062 4.062 10 C -0.068 4.068 11 Cl -0.033 7.033 12 C 0.113 3.887 13 N -0.457 5.457 14 C 0.103 3.897 15 N -0.616 5.616 16 C -0.242 4.242 17 H 0.062 0.938 18 C -0.028 4.028 19 N -0.951 5.951 20 Si 0.932 3.068 21 H -0.272 1.272 22 H -0.310 1.310 23 H -0.266 1.266 24 C 0.105 3.895 25 C 0.050 3.950 26 O -0.378 6.378 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.420 0.580 33 H 0.163 0.837 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.124 0.876 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.971 18.348 -22.921 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.060 3.940 3 C 0.014 3.986 4 N -0.340 5.340 5 C 0.351 3.649 6 O -0.444 6.444 7 C -0.072 4.072 8 C -0.120 4.120 9 C -0.088 4.088 10 C -0.097 4.097 11 Cl -0.004 7.004 12 C -0.048 4.048 13 N -0.168 5.168 14 C -0.023 4.023 15 N -0.341 5.341 16 C -0.371 4.371 17 H 0.080 0.920 18 C -0.224 4.224 19 N -0.597 5.597 20 Si 0.761 3.239 21 H -0.199 1.199 22 H -0.239 1.239 23 H -0.191 1.191 24 C -0.019 4.019 25 C -0.027 4.027 26 O -0.297 6.297 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.180 0.820 34 H 0.200 0.800 35 H 0.213 0.787 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.142 0.858 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.582 17.949 -22.286 28.621 hybrid contribution 0.329 0.570 0.747 0.996 sum -0.253 18.519 -21.540 28.407 Atomic orbital electron populations 1.22159 0.94016 1.03096 1.02349 1.21968 0.94650 0.90547 0.86838 1.21273 0.98835 0.88807 0.89732 1.45720 1.47944 1.10488 1.29843 1.18163 0.80776 0.81956 0.84054 1.90781 1.37393 1.68670 1.47604 1.21058 0.97514 0.93198 0.95422 1.22261 0.98836 0.93179 0.97759 1.21882 0.93080 1.02327 0.91542 1.22468 0.99042 0.95099 0.93112 1.98420 1.81430 1.79329 1.41257 1.23248 0.97182 0.90582 0.93830 1.67662 1.07310 1.38358 1.03513 1.21928 0.97746 0.85427 0.97215 1.44401 1.69223 1.04743 1.15739 1.18830 1.20804 1.11799 0.85658 0.92005 1.25769 0.99930 1.00864 0.95800 1.69928 1.36078 1.50383 1.03352 0.86171 0.82455 0.79293 0.75984 1.19874 1.23903 1.19075 1.21872 0.98204 0.96304 0.85569 1.23155 0.99237 0.81558 0.98795 1.87878 1.72866 1.26582 1.42361 0.91945 0.92371 0.90384 0.90020 0.90798 0.74150 0.81979 0.79991 0.78741 0.94950 0.91847 0.92903 0.90681 0.94715 0.85822 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 7.86 71.98 0.57 -4.52 16 2 C 0.10 3.43 0.78 -10.70 -0.01 3.42 16 3 C 0.14 4.31 4.85 86.38 0.42 4.73 16 4 N -0.69 -18.84 5.18 -465.73 -2.41 -21.25 16 5 C 0.56 15.75 7.81 86.87 0.68 16.43 16 6 O -0.57 -18.84 16.32 -3.77 -0.06 -18.91 16 7 C 0.07 1.42 6.75 41.90 0.28 1.71 16 8 C -0.10 -1.65 9.63 22.61 0.22 -1.43 16 9 C -0.06 -0.70 9.97 22.47 0.22 -0.48 16 10 C -0.07 -0.81 6.35 22.51 0.14 -0.67 16 11 Cl -0.03 -0.33 28.99 -2.72 -0.08 -0.41 16 12 C 0.11 1.57 10.98 84.86 0.93 2.50 16 13 N -0.46 -8.94 9.54 -184.81 -1.76 -10.70 16 14 C 0.10 4.34 3.05 86.35 0.26 4.61 16 15 N -0.62 -28.08 2.35 -697.49 -1.64 -29.73 16 16 C -0.24 -13.24 10.10 84.03 0.85 -12.39 16 17 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 18 C -0.03 -1.63 5.26 84.86 0.45 -1.18 16 19 N -0.95 -58.75 13.97 21.65 0.30 -58.45 16 20 Si 0.93 46.36 24.29 68.60 1.67 48.03 16 21 H -0.27 -12.77 6.58 99.48 0.65 -12.12 16 22 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 23 H -0.27 -12.91 6.55 99.48 0.65 -12.26 16 24 C 0.11 3.85 6.73 86.35 0.58 4.43 16 25 C 0.05 1.46 6.60 72.08 0.48 1.94 16 26 O -0.38 -12.11 10.17 -148.98 -1.52 -13.62 16 27 H 0.06 2.23 6.12 -2.38 -0.01 2.22 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.08 2.04 6.59 -2.39 -0.02 2.02 16 30 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.42 10.50 6.33 -92.71 -0.59 9.92 16 33 H 0.16 2.53 7.64 -2.91 -0.02 2.51 16 34 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 35 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 36 H 0.03 1.40 6.86 -2.39 -0.02 1.38 16 37 H 0.06 2.92 4.60 -2.38 -0.01 2.91 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 40 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.06 1.69 6.26 -2.39 -0.01 1.68 16 Total: -1.00 -69.29 353.32 0.94 -68.35 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.37 Total: 17.60 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 6.07 Total: 19.08 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -5.52 Total: -120.12 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -1.58 Total: -32.53 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -69.29 0.94 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108353922.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.407 kcal (2) G-P(sol) polarization free energy of solvation -69.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds