Wall clock time and date at job start Tue Mar 31 2020 22:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00282 * 359.97438 * 5 4 3 7 7 C 1.48091 * 120.00153 * 179.97438 * 5 4 3 8 8 N 1.32774 * 119.73406 * 359.97438 * 7 5 4 9 9 C 1.31462 * 121.65327 * 180.02562 * 8 7 5 10 10 C 1.38642 * 120.94375 * 359.97438 * 9 8 7 11 11 C 1.38521 * 119.37073 * 0.02562 * 10 9 8 12 12 C 1.38799 * 118.47793 * 359.72627 * 11 10 9 13 13 Cl 1.73599 * 120.48956 * 180.26515 * 12 11 10 14 14 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 15 15 N 1.47155 * 108.38177 * 292.37811 * 14 2 1 16 16 C 1.36941 * 120.97883 * 129.48751 * 15 14 2 17 17 H 1.08003 * 119.99321 * 206.20415 * 16 15 14 18 18 C 1.38813 * 120.00092 * 26.20602 * 16 15 14 19 19 N 1.31617 * 120.00396 * 16.93122 * 18 16 15 20 20 Si 1.86802 * 119.99573 * 196.92891 * 18 16 15 21 21 H 1.48505 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47152 * 120.00095 * 20 18 16 23 23 H 1.48505 * 109.47028 * 240.00035 * 20 18 16 24 24 C 1.47148 * 118.03767 * 309.45938 * 15 14 2 25 25 C 1.53302 * 108.38216 * 50.53749 * 24 15 14 26 26 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 27 27 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 28 28 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 30 30 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 31 31 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 32 32 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.53095 * 179.97438 * 9 8 7 34 34 H 1.07998 * 120.32057 * 179.97438 * 10 9 8 35 35 H 1.08005 * 120.75950 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.67764 * 52.09570 * 14 2 1 37 37 H 1.08995 * 109.68252 * 172.61426 * 14 2 1 38 38 H 0.96988 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.68089 * 290.82070 * 24 15 14 40 40 H 1.08994 * 109.68449 * 170.26152 * 24 15 14 41 41 H 1.09003 * 109.51104 * 67.62096 * 25 24 15 42 42 H 1.09003 * 109.51218 * 187.72433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5792 4.0131 0.6100 7 6 1.3901 4.1202 2.6210 8 7 0.6278 3.4700 3.4922 9 6 0.1705 4.0526 4.5783 10 6 0.4701 5.3773 4.8567 11 6 1.2623 6.0944 3.9753 12 6 1.7358 5.4531 2.8390 13 17 2.7385 6.3001 1.7029 14 6 2.0420 -0.7257 -1.2495 15 7 1.6959 -2.1512 -1.1327 16 6 1.0615 -2.8083 -2.1530 17 1 0.4485 -3.6718 -1.9404 18 6 1.2064 -2.3648 -3.4604 19 7 2.1885 -1.5461 -3.7726 20 14 0.0073 -2.9299 -4.7766 21 1 -0.9976 -3.8413 -4.1724 22 1 -0.6808 -1.7498 -5.3589 23 1 0.7475 -3.6485 -5.8448 24 6 2.0522 -2.8497 0.1124 25 6 1.5397 -2.0205 1.2956 26 8 2.0075 -0.6759 1.1657 27 1 -0.3634 0.5121 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1309 1.4414 -0.0018 31 1 1.6765 1.9568 -0.8889 32 1 0.9980 1.6609 1.8365 33 1 -0.4473 3.4912 5.2636 34 1 0.0887 5.8460 5.7518 35 1 1.5100 7.1275 4.1702 36 1 1.5703 -0.3049 -2.1375 37 1 3.1239 -0.6146 -1.3210 38 1 2.2894 -1.2359 -4.6860 39 1 3.1352 -2.9530 0.1784 40 1 1.5873 -3.8355 0.1263 41 1 0.4497 -2.0278 1.3003 42 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108354027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:31 Heat of formation + Delta-G solvation = -9.699478 kcal Electronic energy + Delta-G solvation = -27468.544839 eV Core-core repulsion = 23476.090523 eV Total energy + Delta-G solvation = -3992.454316 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85365 -39.40368 -38.49330 -36.74718 -34.92499 -34.30679 -33.07261 -31.81424 -31.30113 -31.18808 -27.92380 -26.68487 -25.87318 -24.45654 -23.74846 -23.20275 -21.38887 -20.58542 -18.89603 -18.19289 -17.28120 -17.01951 -16.59700 -15.84803 -15.57062 -15.41998 -15.12861 -14.92749 -14.37233 -14.18248 -13.95326 -13.88351 -13.62216 -13.47918 -13.02030 -12.78970 -12.67341 -12.43183 -12.20757 -11.87437 -11.54559 -11.48534 -11.16538 -11.00648 -10.81607 -10.64358 -10.38775 -10.28491 -10.25735 -10.21812 -9.96047 -9.55803 -9.41702 -9.33474 -9.01220 -8.74781 -8.52791 -6.72856 -5.83525 -3.26763 0.21990 0.64642 1.83507 2.64632 3.11506 3.34376 3.42420 3.44095 3.54817 3.90028 4.26732 4.29176 4.43694 4.44282 4.46086 4.82331 5.01441 5.17567 5.35124 5.40493 5.47602 5.51408 5.55147 5.73159 5.95234 5.96913 5.97904 6.04706 6.12691 6.17217 6.33640 6.49944 6.59965 6.70148 6.78831 6.85329 7.09276 7.24990 7.48426 7.71983 7.72975 7.91519 8.30893 8.34257 9.11868 9.75024 10.32260 11.24433 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002829 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.259572 B = 9896.161668 C =10632.679753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 C 0.138 3.862 4 N -0.693 5.693 5 C 0.557 3.443 6 O -0.516 6.516 7 C 0.095 3.905 8 N -0.442 5.442 9 C 0.100 3.900 10 C -0.142 4.142 11 C -0.077 4.077 12 C -0.042 4.042 13 Cl -0.014 7.014 14 C 0.160 3.840 15 N -0.591 5.591 16 C -0.253 4.253 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.290 1.290 24 C 0.109 3.891 25 C 0.046 3.954 26 O -0.383 6.383 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.412 0.588 33 H 0.170 0.830 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.097 0.903 37 H 0.030 0.970 38 H 0.255 0.745 39 H 0.025 0.975 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 14.028 18.550 23.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 C 0.015 3.985 4 N -0.345 5.345 5 C 0.340 3.660 6 O -0.392 6.392 7 C -0.044 4.044 8 N -0.154 5.154 9 C -0.060 4.060 10 C -0.163 4.163 11 C -0.104 4.104 12 C -0.072 4.072 13 Cl 0.016 6.984 14 C 0.034 3.966 15 N -0.314 5.314 16 C -0.382 4.382 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.217 1.217 24 C -0.017 4.017 25 C -0.032 4.032 26 O -0.303 6.303 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.249 0.751 33 H 0.187 0.813 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.881 13.739 17.584 22.650 hybrid contribution -0.728 0.295 -0.402 0.882 sum -4.609 14.035 17.182 22.659 Atomic orbital electron populations 1.22212 0.95710 1.03241 1.00841 1.22546 0.93640 0.90522 0.89543 1.21444 1.00074 0.90032 0.86957 1.45829 1.52189 1.10827 1.25631 1.17726 0.81325 0.82495 0.84501 1.90890 1.37167 1.65877 1.45239 1.21244 0.96657 0.90585 0.95921 1.67758 1.07677 1.37378 1.02563 1.22967 0.96746 0.92619 0.93657 1.22388 0.97890 0.95658 1.00315 1.21608 0.95748 1.01143 0.91865 1.22049 0.97553 0.93538 0.94108 1.98441 1.65757 1.75675 1.58559 1.21288 0.97822 0.83918 0.93612 1.44008 1.68630 1.04978 1.13828 1.19197 1.21540 1.12119 0.85363 0.91384 1.25038 0.97311 1.00137 0.97090 1.70020 1.29193 1.36860 1.18437 0.86230 0.80752 0.78021 0.81812 1.20264 1.21465 1.21678 1.21600 0.97536 0.95209 0.87371 1.23033 0.98336 0.83119 0.98676 1.87820 1.72861 1.25830 1.43763 0.93746 0.91926 0.90809 0.90545 0.89776 0.75124 0.81321 0.83361 0.83161 0.88532 0.95236 0.93487 0.95668 0.92069 0.93361 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.91 37.16 0.29 -2.57 16 2 C 0.08 1.49 0.76 -90.47 -0.07 1.42 16 3 C 0.14 2.45 4.82 -4.04 -0.02 2.43 16 4 N -0.69 -10.97 5.14 -61.17 -0.31 -11.28 16 5 C 0.56 8.94 7.80 -12.22 -0.10 8.84 16 6 O -0.52 -9.45 13.94 5.34 0.07 -9.38 16 7 C 0.10 1.27 6.75 -82.98 -0.56 0.71 16 8 N -0.44 -5.12 9.54 -9.78 -0.09 -5.22 16 9 C 0.10 0.78 11.18 -17.56 -0.20 0.58 16 10 C -0.14 -0.86 10.11 -39.33 -0.40 -1.26 16 11 C -0.08 -0.60 9.98 -39.27 -0.39 -0.99 16 12 C -0.04 -0.49 6.37 -38.94 -0.25 -0.74 16 13 Cl -0.01 -0.17 26.03 -51.86 -1.35 -1.52 16 14 C 0.16 3.75 4.12 -3.53 -0.01 3.74 16 15 N -0.59 -14.44 2.56 -171.82 -0.44 -14.88 16 16 C -0.25 -6.73 9.65 -15.06 -0.15 -6.88 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.00 0.08 4.95 -17.43 -0.09 0.00 16 19 N -0.90 -25.70 11.14 55.49 0.62 -25.08 16 20 Si 0.90 21.31 29.59 -169.99 -5.03 16.29 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.11 2.26 6.74 -3.53 -0.02 2.23 16 25 C 0.05 0.81 6.60 37.31 0.25 1.06 16 26 O -0.38 -7.24 9.97 -35.23 -0.35 -7.59 16 27 H 0.04 0.68 6.87 -51.93 -0.36 0.32 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.40 6.11 -51.93 -0.32 1.09 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.41 6.17 6.53 -40.82 -0.27 5.90 16 33 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 0.37 8.06 -52.49 -0.42 -0.06 16 35 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 36 H 0.10 2.49 6.14 -51.93 -0.32 2.17 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 41 H 0.05 0.82 6.25 -51.93 -0.32 0.50 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 356.06 15.07 5.37 5.37 Total: -1.00 -31.68 356.06 -8.58 -40.26 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -5.35 Total: 4.47 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -1.71 Total: 8.57 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.23 Total: -56.46 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.28 Total: -16.97 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.35 Total: -1.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.68 -8.58 -40.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108354027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.564 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds