Wall clock time and date at job start Tue Mar 31 2020 22:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.51027 * 2 1 4 4 N 1.46501 * 109.47077 * 60.10794 * 3 2 1 5 5 C 1.34772 * 120.00215 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00282 * 359.97438 * 5 4 3 7 7 C 1.48091 * 120.00153 * 179.97438 * 5 4 3 8 8 N 1.32774 * 119.73406 * 359.97438 * 7 5 4 9 9 C 1.31462 * 121.65327 * 180.02562 * 8 7 5 10 10 C 1.38642 * 120.94375 * 359.97438 * 9 8 7 11 11 C 1.38521 * 119.37073 * 0.02562 * 10 9 8 12 12 C 1.38799 * 118.47793 * 359.72627 * 11 10 9 13 13 Cl 1.73599 * 120.48956 * 180.26515 * 12 11 10 14 14 C 1.53296 * 109.51343 * 239.85211 * 2 1 3 15 15 N 1.47155 * 108.38177 * 292.37811 * 14 2 1 16 16 C 1.36941 * 120.97883 * 129.48751 * 15 14 2 17 17 H 1.08003 * 119.99321 * 206.20415 * 16 15 14 18 18 C 1.38813 * 120.00092 * 26.20602 * 16 15 14 19 19 N 1.31617 * 120.00396 * 16.93122 * 18 16 15 20 20 Si 1.86802 * 119.99573 * 196.92891 * 18 16 15 21 21 H 1.48505 * 109.47405 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47152 * 120.00095 * 20 18 16 23 23 H 1.48505 * 109.47028 * 240.00035 * 20 18 16 24 24 C 1.47148 * 118.03767 * 309.45938 * 15 14 2 25 25 C 1.53302 * 108.38216 * 50.53749 * 24 15 14 26 26 O 1.42955 * 109.51328 * 120.10494 * 2 1 3 27 27 H 1.08998 * 109.47336 * 299.89077 * 1 2 3 28 28 H 1.08996 * 109.47719 * 59.89544 * 1 2 3 29 29 H 1.09004 * 109.47087 * 179.89995 * 1 2 3 30 30 H 1.08999 * 109.46999 * 180.09889 * 3 2 1 31 31 H 1.08993 * 109.47783 * 300.10626 * 3 2 1 32 32 H 0.97002 * 119.99716 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.53095 * 179.97438 * 9 8 7 34 34 H 1.07998 * 120.32057 * 179.97438 * 10 9 8 35 35 H 1.08005 * 120.75950 * 180.02562 * 11 10 9 36 36 H 1.09006 * 109.67764 * 52.09570 * 14 2 1 37 37 H 1.08995 * 109.68252 * 172.61426 * 14 2 1 38 38 H 0.96988 * 119.99920 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.68089 * 290.82070 * 24 15 14 40 40 H 1.08994 * 109.68449 * 170.26152 * 24 15 14 41 41 H 1.09003 * 109.51104 * 67.62096 * 25 24 15 42 42 H 1.09003 * 109.51218 * 187.72433 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.5552 2.1323 1.1975 5 6 1.8816 3.4224 1.4108 6 8 2.5792 4.0131 0.6100 7 6 1.3901 4.1202 2.6210 8 7 0.6278 3.4700 3.4922 9 6 0.1705 4.0526 4.5783 10 6 0.4701 5.3773 4.8567 11 6 1.2623 6.0944 3.9753 12 6 1.7358 5.4531 2.8390 13 17 2.7385 6.3001 1.7029 14 6 2.0420 -0.7257 -1.2495 15 7 1.6959 -2.1512 -1.1327 16 6 1.0615 -2.8083 -2.1530 17 1 0.4485 -3.6718 -1.9404 18 6 1.2064 -2.3648 -3.4604 19 7 2.1885 -1.5461 -3.7726 20 14 0.0073 -2.9299 -4.7766 21 1 -0.9976 -3.8413 -4.1724 22 1 -0.6808 -1.7498 -5.3589 23 1 0.7475 -3.6485 -5.8448 24 6 2.0522 -2.8497 0.1124 25 6 1.5397 -2.0205 1.2956 26 8 2.0075 -0.6759 1.1657 27 1 -0.3634 0.5121 0.8909 28 1 -0.3634 0.5154 -0.8890 29 1 -0.3633 -1.0277 -0.0018 30 1 3.1309 1.4414 -0.0018 31 1 1.6765 1.9568 -0.8889 32 1 0.9980 1.6609 1.8365 33 1 -0.4473 3.4912 5.2636 34 1 0.0887 5.8460 5.7518 35 1 1.5100 7.1275 4.1702 36 1 1.5703 -0.3049 -2.1375 37 1 3.1239 -0.6146 -1.3210 38 1 2.2894 -1.2359 -4.6860 39 1 3.1352 -2.9530 0.1784 40 1 1.5873 -3.8355 0.1263 41 1 0.4497 -2.0278 1.3003 42 1 1.9107 -2.4475 2.2273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108354027.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:30 Heat of formation + Delta-G solvation = -31.542278 kcal Electronic energy + Delta-G solvation = -27469.492014 eV Core-core repulsion = 23476.090523 eV Total energy + Delta-G solvation = -3993.401491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73969 -40.80390 -39.77348 -37.61427 -36.54520 -35.93634 -33.89095 -33.21976 -32.98787 -32.17455 -29.58254 -28.14024 -27.56490 -25.44670 -24.97074 -24.47668 -22.95044 -21.81480 -20.40801 -19.37186 -18.88821 -18.04600 -17.46691 -17.32973 -16.94508 -16.55010 -16.41399 -16.26674 -15.93608 -15.59768 -15.29301 -15.20393 -14.98185 -14.67149 -14.52735 -14.21693 -13.91723 -13.42651 -13.37800 -13.17402 -13.06532 -12.93289 -12.80618 -12.54276 -12.48472 -12.41396 -12.10916 -11.95854 -11.83027 -11.26423 -11.12066 -10.90471 -10.77389 -10.50043 -10.43091 -10.26042 -9.95814 -8.71621 -7.89047 -5.35846 -0.55293 0.01211 1.01919 1.45530 1.47876 1.57912 1.67034 1.96360 2.48432 2.69399 2.78930 3.07247 3.25929 3.50060 3.61098 3.72011 3.88579 3.92202 4.01060 4.10987 4.22195 4.39531 4.42394 4.47112 4.56364 4.62352 4.70947 4.77572 4.82939 4.94371 4.97049 5.05254 5.11827 5.20886 5.32423 5.34725 5.43213 5.53483 5.62370 6.29852 6.35852 6.38284 6.68324 7.07236 7.10570 7.76554 8.30853 9.16838 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018535 B = 0.002829 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.259572 B = 9896.161668 C =10632.679753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.094 3.906 3 C 0.149 3.851 4 N -0.688 5.688 5 C 0.552 3.448 6 O -0.549 6.549 7 C 0.063 3.937 8 N -0.463 5.463 9 C 0.098 3.902 10 C -0.113 4.113 11 C -0.076 4.076 12 C -0.056 4.056 13 Cl -0.038 7.038 14 C 0.169 3.831 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.074 0.926 18 C -0.051 4.051 19 N -0.936 5.936 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.291 1.291 23 H -0.295 1.295 24 C 0.103 3.897 25 C 0.052 3.948 26 O -0.386 6.386 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.418 0.582 33 H 0.206 0.794 34 H 0.198 0.802 35 H 0.179 0.821 36 H 0.068 0.932 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.060 0.940 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 14.580 22.204 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 C 0.024 3.976 4 N -0.340 5.340 5 C 0.337 3.663 6 O -0.427 6.427 7 C -0.074 4.074 8 N -0.175 5.175 9 C -0.063 4.063 10 C -0.132 4.132 11 C -0.102 4.102 12 C -0.086 4.086 13 Cl -0.009 7.009 14 C 0.043 3.957 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.092 0.908 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.795 3.205 21 H -0.187 1.187 22 H -0.217 1.217 23 H -0.222 1.222 24 C -0.023 4.023 25 C -0.025 4.025 26 O -0.306 6.306 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.256 0.744 33 H 0.223 0.777 34 H 0.215 0.785 35 H 0.197 0.803 36 H 0.086 0.914 37 H 0.011 0.989 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.319 14.273 21.281 26.392 hybrid contribution 0.016 0.109 -1.354 1.358 sum -6.303 14.382 19.927 25.370 Atomic orbital electron populations 1.22095 0.94059 1.02849 1.01919 1.22188 0.94602 0.90402 0.87496 1.21121 0.98953 0.89657 0.87869 1.45659 1.52375 1.11017 1.24916 1.18275 0.80557 0.82170 0.85296 1.90860 1.38606 1.66478 1.46767 1.20754 0.99435 0.91273 0.95925 1.67694 1.08033 1.38150 1.03644 1.23720 0.96060 0.93828 0.92658 1.22942 0.95060 0.94621 1.00626 1.22034 0.95175 1.02509 0.90440 1.22266 0.98064 0.93178 0.95111 1.98428 1.66663 1.75937 1.59855 1.21031 0.95419 0.84388 0.94899 1.44263 1.68651 1.05527 1.14685 1.19541 1.21151 1.11987 0.86040 0.90800 1.25798 0.98838 1.00784 0.99184 1.70187 1.31051 1.38550 1.18432 0.85222 0.78831 0.77478 0.79012 1.18698 1.21743 1.22226 1.21814 0.97035 0.96338 0.87090 1.23119 0.99105 0.81730 0.98553 1.87831 1.73210 1.26594 1.42952 0.90907 0.92591 0.91781 0.92343 0.90555 0.74433 0.77717 0.78500 0.80330 0.91413 0.98868 0.94082 0.96960 0.90848 0.92142 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 7.91 71.98 0.57 -4.68 16 2 C 0.09 3.64 0.76 -10.70 -0.01 3.63 16 3 C 0.15 5.50 4.82 86.38 0.42 5.92 16 4 N -0.69 -22.06 5.14 -465.75 -2.39 -24.46 16 5 C 0.55 18.20 7.80 86.86 0.68 18.88 16 6 O -0.55 -21.18 13.94 -3.80 -0.05 -21.24 16 7 C 0.06 1.65 6.75 41.90 0.28 1.93 16 8 N -0.46 -9.71 9.54 -184.84 -1.76 -11.47 16 9 C 0.10 1.10 11.18 84.84 0.95 2.04 16 10 C -0.11 -0.78 10.11 22.43 0.23 -0.55 16 11 C -0.08 -0.92 9.98 22.47 0.22 -0.69 16 12 C -0.06 -1.23 6.37 22.69 0.14 -1.08 16 13 Cl -0.04 -0.98 26.03 -2.72 -0.07 -1.05 16 14 C 0.17 8.33 4.12 86.35 0.36 8.68 16 15 N -0.61 -30.24 2.56 -697.53 -1.79 -32.03 16 16 C -0.26 -13.85 9.65 84.03 0.81 -13.04 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 18 C -0.05 -2.81 4.95 84.86 0.42 -2.39 16 19 N -0.94 -55.68 11.14 21.65 0.24 -55.44 16 20 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 24 C 0.10 4.19 6.74 86.36 0.58 4.77 16 25 C 0.05 1.72 6.60 72.08 0.48 2.20 16 26 O -0.39 -14.28 9.97 -148.98 -1.49 -15.77 16 27 H 0.07 2.09 6.87 -2.39 -0.02 2.08 16 28 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.06 2.35 6.11 -2.38 -0.01 2.34 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.42 12.19 6.53 -92.71 -0.61 11.58 16 33 H 0.21 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.20 -0.49 8.06 -2.91 -0.02 -0.51 16 35 H 0.18 1.09 8.06 -2.91 -0.02 1.06 16 36 H 0.07 3.71 6.14 -2.38 -0.01 3.69 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.25 14.46 8.31 -92.72 -0.77 13.69 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 2.78 7.96 -2.39 -0.02 2.76 16 41 H 0.06 1.89 6.25 -2.39 -0.01 1.87 16 42 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -73.56 356.06 1.30 -72.26 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.46 Total: 16.99 kcal Atomic # 6 Polarization: 19.50 SS G_CDS: 6.13 Total: 25.62 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.71 Total: -123.40 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.54 Total: -37.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.05 kcal Total: -73.56 1.30 -72.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108354027.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.718 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds