Wall clock time and date at job start Tue Mar 31 2020 22:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00202 * 2 1 4 4 H 1.48499 * 109.47182 * 239.99886 * 3 2 1 5 5 H 1.48497 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47365 * 119.99955 * 3 2 1 7 7 C 1.38814 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00138 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00164 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47181 * 179.97438 * 10 9 7 12 12 C 1.54166 * 111.82347 * 299.26174 * 11 10 9 13 13 C 1.54841 * 104.32279 * 261.24483 * 12 11 10 14 14 C 1.54840 * 102.73784 * 321.80774 * 13 12 11 15 15 C 1.54166 * 104.32458 * 38.19486 * 14 13 12 16 16 H 1.09003 * 112.54986 * 99.18944 * 15 14 13 17 17 C 1.54323 * 108.86341 * 223.78642 * 15 14 13 18 18 N 1.48116 * 104.69267 * 89.56242 * 17 15 14 19 19 C 1.34780 * 127.84748 * 219.48648 * 18 17 15 20 20 O 1.21574 * 120.00612 * 180.02562 * 19 18 17 21 21 C 1.47524 * 119.99556 * 0.02586 * 19 18 17 22 22 C 1.36781 * 126.92811 * 180.02562 * 21 19 18 23 23 C 1.41409 * 103.84064 * 180.02562 * 22 21 19 24 24 Cl 1.73602 * 126.72555 * 179.97438 * 23 22 21 25 25 N 1.30230 * 106.54607 * 0.02562 * 23 22 21 26 26 O 1.20885 * 111.95877 * 359.69776 * 25 23 22 27 27 C 1.48115 * 104.31383 * 39.74942 * 18 17 15 28 28 H 0.97002 * 119.99525 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99777 * 359.97438 * 9 7 2 30 30 H 1.09009 * 109.46903 * 59.99888 * 10 9 7 31 31 H 1.08999 * 109.47113 * 300.00019 * 10 9 7 32 32 H 1.08997 * 110.45632 * 19.95181 * 12 11 10 33 33 H 1.08998 * 110.46262 * 142.40033 * 12 11 10 34 34 H 1.08993 * 110.76213 * 80.13066 * 13 12 11 35 35 H 1.09010 * 110.75503 * 203.50082 * 13 12 11 36 36 H 1.08998 * 110.46389 * 279.48644 * 14 13 12 37 37 H 1.08998 * 110.46425 * 156.90312 * 14 13 12 38 38 H 1.09001 * 110.39384 * 330.76246 * 17 15 14 39 39 H 1.09001 * 110.39508 * 208.36567 * 17 15 14 40 40 H 1.08008 * 128.08270 * 0.02562 * 22 21 19 41 41 H 1.08998 * 110.39378 * 79.05807 * 27 18 17 42 42 H 1.09001 * 110.39811 * 201.44737 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0637 -4.8198 0.0012 12 6 0.1601 -4.8005 1.2501 13 6 0.8128 -5.8243 2.2110 14 6 1.2788 -6.9454 1.2501 15 6 1.7802 -6.1934 0.0012 16 1 2.8649 -6.0865 -0.0150 17 6 1.2550 -6.9129 -1.2589 18 7 -0.0529 -6.2760 -1.5376 19 6 -1.1890 -6.8686 -1.9555 20 8 -2.1891 -6.2028 -2.1416 21 6 -1.2190 -8.3252 -2.1871 22 6 -2.2869 -9.0684 -2.6090 23 6 -1.7804 -10.3875 -2.6641 24 17 -2.6504 -11.8149 -3.1327 25 7 -0.5337 -10.3219 -2.2935 26 8 -0.1994 -9.1904 -2.0300 27 6 0.1729 -4.8389 -1.2589 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 0.0005 30 1 2.6847 -3.7146 0.8906 31 1 2.6846 -3.7146 -0.8894 32 1 0.1523 -3.8074 1.6994 33 1 -0.8530 -5.1090 0.9922 34 1 1.6632 -5.3806 2.7286 35 1 0.0815 -6.2057 2.9238 36 1 0.4445 -7.5978 0.9926 37 1 2.0887 -7.5202 1.6994 38 1 1.1248 -7.9771 -1.0621 39 1 1.9373 -6.7611 -2.0953 40 1 -3.2842 -8.7275 -2.8450 41 1 0.6878 -4.3662 -2.0952 42 1 -0.7742 -4.3367 -1.0621 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112566865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:57 Heat of formation + Delta-G solvation = 44.185989 kcal Electronic energy + Delta-G solvation = -27624.357524 eV Core-core repulsion = 23634.239857 eV Total energy + Delta-G solvation = -3990.117667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.59075 -40.72569 -38.77017 -37.57918 -35.13291 -34.31613 -34.07000 -32.57064 -31.63069 -29.98850 -29.34343 -26.23787 -25.50803 -24.32327 -24.03541 -23.08105 -22.28122 -20.75701 -20.28628 -18.87114 -18.38458 -18.00488 -17.07648 -16.69490 -16.16322 -15.87638 -15.20128 -14.92573 -14.72811 -14.49939 -14.20555 -13.84936 -13.66864 -13.40128 -13.19156 -13.10836 -12.92415 -12.79239 -12.47489 -12.04013 -11.58110 -11.48032 -11.18760 -10.95281 -10.84477 -10.77428 -10.64329 -10.59363 -10.51998 -10.51216 -10.38269 -10.25083 -10.23097 -9.99192 -9.66369 -8.91240 -8.79733 -6.93963 -5.77174 -3.06384 0.32974 0.97445 1.35725 2.10667 2.72451 2.79971 3.43653 3.48334 3.49389 3.73053 4.23880 4.24543 4.41719 4.53805 4.55805 4.61190 4.71737 5.19448 5.22015 5.30073 5.34915 5.35610 5.53574 5.57454 5.59853 5.64405 5.73137 5.82573 5.89487 5.99575 6.03068 6.17085 6.18550 6.30156 6.42188 6.51258 6.67075 6.72289 6.76683 7.21438 7.37653 7.68616 7.74628 8.41205 9.52711 10.09151 10.43631 11.45269 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023069 B = 0.002559 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.478181 B =10938.679086 C =11540.042073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.174 3.826 11 C -0.074 4.074 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.115 4.115 15 C -0.097 4.097 16 H 0.100 0.900 17 C 0.097 3.903 18 N -0.602 5.602 19 C 0.618 3.382 20 O -0.506 6.506 21 C -0.055 4.055 22 C -0.141 4.141 23 C 0.053 3.947 24 Cl 0.032 6.968 25 N -0.331 5.331 26 O 0.136 5.864 27 C 0.121 3.879 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.026 0.974 31 H 0.022 0.978 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.195 0.805 41 H 0.084 0.916 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -22.908 -2.748 23.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.375 5.375 10 C 0.047 3.953 11 C -0.075 4.075 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.152 4.152 15 C -0.117 4.117 16 H 0.118 0.882 17 C -0.026 4.026 18 N -0.334 5.334 19 C 0.403 3.597 20 O -0.381 6.381 21 C -0.121 4.121 22 C -0.164 4.164 23 C -0.130 4.130 24 Cl 0.060 6.940 25 N -0.032 5.032 26 O 0.060 5.940 27 C 0.000 4.000 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.044 0.956 31 H 0.040 0.960 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.212 0.788 41 H 0.102 0.898 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.894 -23.510 -2.802 23.694 hybrid contribution -0.616 1.013 -0.285 1.219 sum -1.510 -22.498 -3.087 22.759 Atomic orbital electron populations 1.69646 1.05070 1.25825 1.57430 1.24732 0.95491 0.97657 1.02914 0.86286 0.78522 0.83647 0.77802 1.21311 1.21742 1.21313 1.19144 0.90956 0.84095 1.43059 0.91260 1.42360 1.05906 0.99765 1.89501 1.20554 0.92213 0.84415 0.98167 1.22305 0.95693 0.94838 0.94661 1.22458 0.97472 1.00657 0.94503 1.22461 1.00252 0.95845 0.97319 1.22399 1.00139 0.97481 0.95215 1.22766 1.00638 0.94457 0.93829 0.88192 1.22783 0.83709 0.97857 0.98215 1.48846 1.09774 1.11102 1.63713 1.15932 0.82954 0.82146 0.78681 1.90931 1.32981 1.61854 1.52344 1.24300 0.88245 0.93720 1.05848 1.22744 1.02035 0.89260 1.02394 1.24042 0.91400 0.91357 1.06207 1.98428 1.71959 1.33908 1.89734 1.73854 1.14315 1.00175 1.14850 1.85141 1.34679 1.10967 1.63212 1.22595 1.01152 0.78564 0.97642 0.93417 0.78075 0.95599 0.96029 0.89678 0.92121 0.91227 0.92052 0.92043 0.91635 0.89523 0.90154 0.78790 0.89789 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.46 9.99 -15.06 -0.15 -6.61 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.73 -17.19 4.93 -59.90 -0.30 -17.49 16 10 C 0.17 3.15 5.19 -4.04 -0.02 3.13 16 11 C -0.07 -1.06 0.62 -152.19 -0.09 -1.16 16 12 C -0.11 -1.68 5.58 -25.15 -0.14 -1.83 16 13 C -0.12 -1.47 6.90 -24.79 -0.17 -1.64 16 14 C -0.11 -1.19 6.26 -25.15 -0.16 -1.35 16 15 C -0.10 -1.07 3.57 -88.30 -0.31 -1.38 16 16 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 17 C 0.10 0.99 6.00 -2.46 -0.01 0.98 16 18 N -0.60 -7.75 3.31 -170.67 -0.57 -8.31 16 19 C 0.62 8.42 7.91 -12.47 -0.10 8.32 16 20 O -0.51 -8.50 17.18 5.30 0.09 -8.41 16 21 C -0.06 -0.62 7.11 -36.33 -0.26 -0.88 16 22 C -0.14 -1.40 10.96 -38.90 -0.43 -1.83 16 23 C 0.05 0.53 7.97 -17.02 -0.14 0.40 16 24 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 25 N -0.33 -3.67 12.05 32.82 0.40 -3.28 16 26 O 0.14 1.45 8.51 15.56 0.13 1.58 16 27 C 0.12 1.83 5.48 -2.46 -0.01 1.82 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.39 9.62 6.87 -40.82 -0.28 9.34 16 30 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 1.51 7.14 -51.93 -0.37 1.14 16 33 H 0.06 0.92 7.58 -51.93 -0.39 0.53 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.06 0.64 7.58 -51.93 -0.39 0.25 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.79 5.18 -51.93 -0.27 0.52 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.19 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.08 1.33 7.98 -51.93 -0.41 0.91 16 42 H 0.09 1.60 7.44 -51.93 -0.39 1.22 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -30.25 358.96 -8.17 -38.42 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.42 Total: 5.64 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -2.09 Total: -2.46 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: 0.26 Total: -55.89 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.22 Total: -6.83 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.25 -8.17 -38.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112566865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.606 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds