Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86791 * 120.00193 * 2 1 4 4 H 1.48507 * 109.46768 * 269.99842 * 3 2 1 5 5 H 1.48499 * 109.47740 * 29.99643 * 3 2 1 6 6 H 1.48504 * 109.47606 * 149.99922 * 3 2 1 7 7 C 1.38655 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00508 * 0.02562 * 7 2 1 9 9 O 1.34837 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.35744 * 116.99960 * 185.05895 * 9 7 2 11 11 C 1.38897 * 120.07507 * 354.49117 * 10 9 7 12 12 C 1.38074 * 119.93502 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.06564 * 359.75426 * 12 11 10 14 14 C 1.38273 * 120.14226 * 0.50093 * 13 12 11 15 15 C 1.50691 * 119.96699 * 179.77002 * 14 13 12 16 16 N 1.46497 * 109.47172 * 269.72172 * 15 14 13 17 17 C 1.34778 * 120.00440 * 179.97438 * 16 15 14 18 18 O 1.21582 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.47693 * 120.00551 * 180.02562 * 17 16 15 20 20 C 1.41594 * 120.02921 * 359.97438 * 19 17 16 21 21 C 1.35778 * 119.54696 * 180.25498 * 20 19 17 22 22 C 1.40861 * 119.39272 * 359.46362 * 21 20 19 23 23 N 1.32482 * 133.42272 * 180.18585 * 22 21 20 24 24 N 1.28525 * 110.24705 * 180.32504 * 23 22 21 25 25 N 1.28982 * 110.84516 * 359.97438 * 24 23 22 26 26 N 1.36927 * 119.92822 * 0.54505 * 22 21 20 27 27 C 1.35503 * 120.84799 * 359.72382 * 26 22 21 28 28 C 1.38129 * 120.06629 * 359.49531 * 14 13 12 29 29 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.02879 * 359.95853 * 11 10 9 31 31 H 1.07997 * 119.96299 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.92452 * 180.27395 * 13 12 11 33 33 H 1.09004 * 109.47019 * 149.72651 * 15 14 13 34 34 H 1.08995 * 109.47660 * 29.72500 * 15 14 13 35 35 H 0.97001 * 120.00312 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.22610 * 359.97438 * 20 19 17 37 37 H 1.08002 * 120.30749 * 179.72772 * 21 20 19 38 38 H 1.07998 * 119.82816 * 179.97438 * 27 26 22 39 39 H 1.07997 * 120.03782 * 180.23172 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0462 -1.4002 5 1 1.4472 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4058 -0.1061 11 6 3.2232 -3.5748 -0.0926 12 6 3.8529 -4.7988 -0.2013 13 6 5.2289 -4.8614 -0.3285 14 6 5.9789 -3.6998 -0.3369 15 6 7.4781 -3.7729 -0.4705 16 7 8.0835 -3.8569 0.8609 17 6 9.4231 -3.9324 0.9886 18 8 10.1292 -3.9303 -0.0012 19 6 10.0335 -4.0176 2.3308 20 6 9.2119 -4.0195 3.4840 21 6 9.7836 -4.0930 4.7133 22 6 11.1856 -4.1777 4.8198 23 7 12.0174 -4.2627 5.8475 24 7 13.2330 -4.3110 5.4330 25 7 13.2810 -4.2630 4.1450 26 7 11.9581 -4.1739 3.6892 27 6 11.3914 -4.0951 2.4609 28 6 5.3549 -2.4723 -0.2287 29 1 -0.4850 0.8401 -0.0004 30 1 2.1485 -3.5263 0.0029 31 1 3.2701 -5.7079 -0.1905 32 1 5.7186 -5.8198 -0.4178 33 1 7.8415 -2.8799 -0.9791 34 1 7.7488 -4.6560 -1.0491 35 1 7.5203 -3.8589 1.6506 36 1 8.1380 -3.9583 3.3866 37 1 9.1688 -4.0909 5.6013 38 1 12.0164 -4.0930 1.5801 39 1 5.9409 -1.5651 -0.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116255067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = 119.706698 kcal Electronic energy + Delta-G solvation = -26788.920008 eV Core-core repulsion = 22700.969671 eV Total energy + Delta-G solvation = -4087.950337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.93399 -40.67200 -39.45550 -38.61337 -37.14581 -35.18129 -34.54455 -32.84025 -32.53916 -31.17038 -30.93904 -29.56709 -26.95588 -25.55267 -25.07492 -24.80527 -23.35828 -22.02245 -21.61377 -20.92956 -19.44585 -18.39042 -18.05675 -17.82658 -17.41375 -17.07015 -16.32583 -15.79603 -15.62696 -15.39710 -15.06842 -14.90268 -14.26127 -14.16976 -14.08043 -13.97206 -13.60697 -13.51918 -13.02149 -12.90507 -12.75592 -12.41517 -12.31484 -12.24035 -12.18585 -11.61882 -11.57700 -11.10021 -11.01273 -10.89064 -10.73311 -10.60828 -10.30412 -9.58137 -9.47411 -9.21518 -9.02920 -8.50389 -7.62139 -6.55948 -4.23860 -0.45493 -0.13613 1.03667 1.42895 1.62636 2.00332 2.11868 2.77942 2.81815 3.07451 3.11952 3.16284 3.28625 3.52308 3.77348 3.94692 4.10614 4.23779 4.25012 4.34169 4.51196 4.72481 4.89462 4.96018 4.97243 5.03249 5.11615 5.23646 5.34760 5.45358 5.57869 5.61432 5.67623 5.86863 5.97816 6.01728 6.26574 6.52519 6.83765 6.94584 7.03738 7.07498 7.36375 7.61609 7.66500 7.82359 7.86735 8.78416 9.37856 10.51184 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002178 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.593344 B =12850.539115 C =13620.575500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.260 1.260 7 C -0.393 4.393 8 H 0.107 0.893 9 O -0.214 6.214 10 C 0.156 3.844 11 C -0.210 4.210 12 C -0.077 4.077 13 C -0.186 4.186 14 C -0.080 4.080 15 C 0.168 3.832 16 N -0.707 5.707 17 C 0.569 3.431 18 O -0.530 6.530 19 C -0.148 4.148 20 C -0.034 4.034 21 C -0.091 4.091 22 C 0.252 3.748 23 N -0.322 5.322 24 N -0.003 5.003 25 N -0.103 5.103 26 N -0.307 5.307 27 C 0.179 3.821 28 C -0.171 4.171 29 H 0.281 0.719 30 H 0.135 0.865 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.405 0.595 36 H 0.165 0.835 37 H 0.176 0.824 38 H 0.197 0.803 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.755 -9.251 5.070 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.468 4.468 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.103 3.897 11 C -0.229 4.229 12 C -0.095 4.095 13 C -0.206 4.206 14 C -0.081 4.081 15 C 0.046 3.954 16 N -0.358 5.358 17 C 0.354 3.646 18 O -0.408 6.408 19 C -0.158 4.158 20 C -0.060 4.060 21 C -0.114 4.114 22 C -0.003 4.003 23 N -0.181 5.181 24 N 0.004 4.996 25 N -0.086 5.086 26 N -0.085 5.085 27 C 0.049 3.951 28 C -0.191 4.191 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.182 0.818 37 H 0.193 0.807 38 H 0.214 0.786 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.632 -8.974 5.123 20.437 hybrid contribution -1.035 0.726 -0.222 1.284 sum 16.597 -8.248 4.901 19.170 Atomic orbital electron populations 1.69640 1.05601 1.28718 1.47212 1.24484 0.95042 0.98930 0.95471 0.86177 0.80273 0.81349 0.79073 1.19798 1.20684 1.18365 1.20757 0.76697 0.96683 1.52671 0.87539 1.83575 1.22767 1.25545 1.79935 1.19061 0.91567 0.85670 0.93389 1.21394 1.01394 0.91915 1.08217 1.20820 0.94172 0.96892 0.97621 1.20552 0.93913 0.96710 1.09397 1.19194 0.93040 0.93094 1.02741 1.20264 0.89141 1.03149 0.82839 1.46005 1.05692 1.73352 1.10732 1.17464 0.82738 0.77500 0.86931 1.90857 1.61455 1.50055 1.38394 1.19737 0.92007 1.08146 0.95867 1.21528 1.01773 0.92453 0.90226 1.20366 0.88033 1.02589 1.00366 1.23159 0.95815 0.98185 0.83107 1.75209 0.94619 1.25326 1.22918 1.77906 1.13002 1.06025 1.02665 1.82906 0.92009 1.27761 1.05883 1.48848 1.07896 1.43976 1.07802 1.21741 0.94004 0.92833 0.86527 1.20083 0.92034 0.97193 1.09808 0.90866 0.84776 0.86897 0.87200 0.90199 0.90191 0.75898 0.81782 0.80669 0.78579 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.91 13.96 55.48 0.77 -23.13 16 2 C 0.06 1.71 5.49 -17.51 -0.10 1.61 16 3 Si 0.91 20.33 28.62 -169.99 -4.86 15.47 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -10.22 9.95 30.89 0.31 -9.92 16 8 H 0.11 2.83 5.44 -52.49 -0.29 2.54 16 9 O -0.21 -5.09 8.59 0.05 0.00 -5.09 16 10 C 0.16 3.11 6.65 -39.11 -0.26 2.85 16 11 C -0.21 -3.89 9.17 -39.40 -0.36 -4.25 16 12 C -0.08 -1.14 10.04 -39.61 -0.40 -1.54 16 13 C -0.19 -2.42 9.70 -39.54 -0.38 -2.80 16 14 C -0.08 -1.04 5.25 -104.65 -0.55 -1.59 16 15 C 0.17 1.74 5.80 -5.20 -0.03 1.71 16 16 N -0.71 -5.85 5.50 -62.48 -0.34 -6.20 16 17 C 0.57 5.04 7.77 -12.40 -0.10 4.94 16 18 O -0.53 -6.43 16.28 5.29 0.09 -6.34 16 19 C -0.15 -1.00 5.84 -105.33 -0.62 -1.61 16 20 C -0.03 -0.15 9.53 -39.18 -0.37 -0.53 16 21 C -0.09 -0.49 10.09 -39.47 -0.40 -0.89 16 22 C 0.25 2.34 8.02 -156.28 -1.25 1.09 16 23 N -0.32 -3.80 12.26 31.10 0.38 -3.42 16 24 N 0.00 -0.04 13.35 60.35 0.81 0.77 16 25 N -0.10 -1.21 13.99 60.35 0.84 -0.37 16 26 N -0.31 -2.96 3.92 -12.06 -0.05 -3.00 16 27 C 0.18 1.35 10.77 -16.51 -0.18 1.18 16 28 C -0.17 -2.78 9.65 -39.39 -0.38 -3.16 16 29 H 0.28 7.10 8.31 -40.82 -0.34 6.77 16 30 H 0.13 2.68 5.64 -52.48 -0.30 2.38 16 31 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 32 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 34 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.40 2.56 6.50 -40.82 -0.27 2.29 16 36 H 0.16 0.31 6.44 -52.48 -0.34 -0.03 16 37 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 38 H 0.20 1.27 7.57 -52.49 -0.40 0.88 16 39 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 349.79 15.07 5.27 5.27 Total: -1.00 -31.44 349.79 -5.40 -36.85 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.25 Total: 2.10 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -5.07 Total: -12.91 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 2.41 Total: -35.35 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.86 Total: 15.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.44 -5.40 -36.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116255067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.554 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds