Wall clock time and date at job start Tue Mar 31 2020 22:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86791 * 120.00193 * 2 1 4 4 H 1.48507 * 109.46768 * 269.99842 * 3 2 1 5 5 H 1.48499 * 109.47740 * 29.99643 * 3 2 1 6 6 H 1.48504 * 109.47606 * 149.99922 * 3 2 1 7 7 C 1.38655 * 119.99523 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00508 * 0.02562 * 7 2 1 9 9 O 1.34837 * 119.99861 * 179.97438 * 7 2 1 10 10 C 1.35744 * 116.99960 * 185.05895 * 9 7 2 11 11 C 1.38897 * 120.07507 * 354.49117 * 10 9 7 12 12 C 1.38074 * 119.93502 * 179.97438 * 11 10 9 13 13 C 1.38327 * 120.06564 * 359.75426 * 12 11 10 14 14 C 1.38273 * 120.14226 * 0.50093 * 13 12 11 15 15 C 1.50691 * 119.96699 * 179.77002 * 14 13 12 16 16 N 1.46497 * 109.47172 * 269.72172 * 15 14 13 17 17 C 1.34778 * 120.00440 * 179.97438 * 16 15 14 18 18 O 1.21582 * 119.99742 * 0.02562 * 17 16 15 19 19 C 1.47693 * 120.00551 * 180.02562 * 17 16 15 20 20 C 1.41594 * 120.02921 * 359.97438 * 19 17 16 21 21 C 1.35778 * 119.54696 * 180.25498 * 20 19 17 22 22 C 1.40861 * 119.39272 * 359.46362 * 21 20 19 23 23 N 1.32482 * 133.42272 * 180.18585 * 22 21 20 24 24 N 1.28525 * 110.24705 * 180.32504 * 23 22 21 25 25 N 1.28982 * 110.84516 * 359.97438 * 24 23 22 26 26 N 1.36927 * 119.92822 * 0.54505 * 22 21 20 27 27 C 1.35503 * 120.84799 * 359.72382 * 26 22 21 28 28 C 1.38129 * 120.06629 * 359.49531 * 14 13 12 29 29 H 0.97000 * 119.99713 * 0.02562 * 1 2 3 30 30 H 1.08006 * 120.02879 * 359.95853 * 11 10 9 31 31 H 1.07997 * 119.96299 * 179.97438 * 12 11 10 32 32 H 1.08001 * 119.92452 * 180.27395 * 13 12 11 33 33 H 1.09004 * 109.47019 * 149.72651 * 15 14 13 34 34 H 1.08995 * 109.47660 * 29.72500 * 15 14 13 35 35 H 0.97001 * 120.00312 * 0.02562 * 16 15 14 36 36 H 1.08003 * 120.22610 * 359.97438 * 20 19 17 37 37 H 1.08002 * 120.30749 * 179.72772 * 21 20 19 38 38 H 1.07998 * 119.82816 * 179.97438 * 27 26 22 39 39 H 1.07997 * 120.03782 * 180.23172 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 2.4971 2.0462 -1.4002 5 1 1.4472 2.6527 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 0.0005 8 1 1.4688 -2.1361 0.0005 9 8 3.3571 -1.2009 0.0000 10 6 3.9733 -2.4058 -0.1061 11 6 3.2232 -3.5748 -0.0926 12 6 3.8529 -4.7988 -0.2013 13 6 5.2289 -4.8614 -0.3285 14 6 5.9789 -3.6998 -0.3369 15 6 7.4781 -3.7729 -0.4705 16 7 8.0835 -3.8569 0.8609 17 6 9.4231 -3.9324 0.9886 18 8 10.1292 -3.9303 -0.0012 19 6 10.0335 -4.0176 2.3308 20 6 9.2119 -4.0195 3.4840 21 6 9.7836 -4.0930 4.7133 22 6 11.1856 -4.1777 4.8198 23 7 12.0174 -4.2627 5.8475 24 7 13.2330 -4.3110 5.4330 25 7 13.2810 -4.2630 4.1450 26 7 11.9581 -4.1739 3.6892 27 6 11.3914 -4.0951 2.4609 28 6 5.3549 -2.4723 -0.2287 29 1 -0.4850 0.8401 -0.0004 30 1 2.1485 -3.5263 0.0029 31 1 3.2701 -5.7079 -0.1905 32 1 5.7186 -5.8198 -0.4178 33 1 7.8415 -2.8799 -0.9791 34 1 7.7488 -4.6560 -1.0491 35 1 7.5203 -3.8589 1.6506 36 1 8.1380 -3.9583 3.3866 37 1 9.1688 -4.0909 5.6013 38 1 12.0164 -4.0930 1.5801 39 1 5.9409 -1.5651 -0.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116255067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:40 Heat of formation + Delta-G solvation = 98.357430 kcal Electronic energy + Delta-G solvation = -26789.845782 eV Core-core repulsion = 22700.969671 eV Total energy + Delta-G solvation = -4088.876111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.65239 -41.43814 -40.82495 -39.38024 -38.49932 -36.04004 -35.25859 -34.42574 -33.57123 -32.13118 -31.73048 -30.93140 -27.90983 -27.16078 -25.99742 -25.48719 -24.06663 -23.29304 -22.45110 -22.17629 -20.19290 -19.69177 -19.22205 -18.64344 -18.31771 -18.14909 -17.08585 -16.83387 -16.77037 -16.20867 -16.15933 -15.82548 -15.67843 -15.56487 -15.02061 -14.72401 -14.68470 -14.50348 -14.24615 -14.11575 -13.82433 -13.79385 -13.39790 -13.07314 -12.93097 -12.83078 -12.57234 -12.43050 -12.35820 -12.33330 -11.91378 -11.44644 -11.39688 -11.26923 -10.89300 -10.23030 -9.84597 -9.75471 -9.07785 -8.47658 -6.20163 -1.09953 -0.67203 0.30523 0.46944 0.67308 0.70099 1.34808 1.37502 1.46233 1.53460 2.00629 2.20230 2.29190 2.45961 2.79314 2.91292 3.02247 3.17850 3.27257 3.42136 3.65270 3.71991 3.86768 3.99691 4.12002 4.32835 4.40865 4.47157 4.54503 4.59711 4.62976 4.71608 4.78550 4.93924 4.97835 5.05651 5.22984 5.24751 5.41712 5.67200 5.74306 5.79197 5.93200 6.23478 6.36621 6.87252 6.98645 7.04727 7.61745 8.63641 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015469 B = 0.002178 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.593344 B =12850.539115 C =13620.575500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.395 4.395 8 H 0.083 0.917 9 O -0.245 6.245 10 C 0.117 3.883 11 C -0.228 4.228 12 C -0.076 4.076 13 C -0.155 4.155 14 C -0.062 4.062 15 C 0.173 3.827 16 N -0.697 5.697 17 C 0.577 3.423 18 O -0.562 6.562 19 C -0.135 4.135 20 C -0.014 4.014 21 C -0.082 4.082 22 C 0.241 3.759 23 N -0.347 5.347 24 N -0.025 5.025 25 N -0.127 5.127 26 N -0.308 5.308 27 C 0.169 3.831 28 C -0.166 4.166 29 H 0.283 0.717 30 H 0.106 0.894 31 H 0.140 0.860 32 H 0.153 0.847 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.417 0.583 36 H 0.201 0.799 37 H 0.207 0.793 38 H 0.202 0.798 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.116 -10.713 4.974 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.182 1.182 7 C -0.471 4.471 8 H 0.101 0.899 9 O -0.153 6.153 10 C 0.068 3.932 11 C -0.247 4.247 12 C -0.094 4.094 13 C -0.173 4.173 14 C -0.062 4.062 15 C 0.051 3.949 16 N -0.349 5.349 17 C 0.362 3.638 18 O -0.441 6.441 19 C -0.144 4.144 20 C -0.040 4.040 21 C -0.105 4.105 22 C -0.012 4.012 23 N -0.207 5.207 24 N -0.018 5.018 25 N -0.111 5.111 26 N -0.086 5.086 27 C 0.039 3.961 28 C -0.186 4.186 29 H 0.093 0.907 30 H 0.124 0.876 31 H 0.158 0.842 32 H 0.170 0.830 33 H 0.096 0.904 34 H 0.113 0.887 35 H 0.256 0.744 36 H 0.218 0.782 37 H 0.224 0.776 38 H 0.219 0.781 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 19.018 -10.480 5.041 22.292 hybrid contribution -1.317 0.834 -0.296 1.587 sum 17.701 -9.646 4.745 20.709 Atomic orbital electron populations 1.69730 1.06936 1.29502 1.50284 1.25258 0.95825 1.02127 0.95737 0.85243 0.78971 0.77595 0.79091 1.19484 1.19698 1.18225 1.20672 0.78126 0.95991 1.52319 0.89939 1.83518 1.21100 1.27528 1.83125 1.19624 0.93151 0.85079 0.95362 1.21404 1.00324 0.93464 1.09533 1.21137 0.95480 0.96217 0.96559 1.21065 0.92930 0.98446 1.04899 1.19421 0.94631 0.91778 1.00386 1.20164 0.86814 1.03971 0.83959 1.45798 1.05635 1.72952 1.10525 1.17535 0.82514 0.76649 0.87060 1.90863 1.62173 1.51450 1.39652 1.19609 0.91645 1.07478 0.95666 1.21885 1.03139 0.90203 0.88768 1.20820 0.86280 1.01414 1.01973 1.23688 0.96991 0.98069 0.82410 1.75091 0.94768 1.26524 1.24324 1.77858 1.13830 1.06937 1.03175 1.82808 0.93456 1.29130 1.05696 1.48808 1.07366 1.43977 1.08476 1.21925 0.94688 0.93419 0.86090 1.20321 0.90376 0.99080 1.08816 0.90700 0.87634 0.84172 0.82969 0.90409 0.88650 0.74415 0.78166 0.77597 0.78129 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.85 13.96 21.61 0.30 -52.54 16 2 C 0.01 0.49 5.49 84.83 0.47 0.95 16 3 Si 0.97 42.88 28.62 68.60 1.96 44.84 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.39 -21.58 9.95 67.92 0.68 -20.90 16 8 H 0.08 4.73 5.44 -2.91 -0.02 4.71 16 9 O -0.25 -11.99 8.59 -22.75 -0.20 -12.19 16 10 C 0.12 4.64 6.65 22.58 0.15 4.79 16 11 C -0.23 -8.43 9.17 22.39 0.21 -8.22 16 12 C -0.08 -2.00 10.04 22.25 0.22 -1.78 16 13 C -0.15 -3.14 9.70 22.30 0.22 -2.93 16 14 C -0.06 -1.31 5.25 -19.88 -0.10 -1.41 16 15 C 0.17 2.70 5.80 85.63 0.50 3.19 16 16 N -0.70 -7.87 5.50 -469.86 -2.58 -10.45 16 17 C 0.58 7.80 7.77 86.74 0.67 8.47 16 18 O -0.56 -11.80 16.28 -3.97 -0.06 -11.87 16 19 C -0.13 -1.30 5.84 -20.33 -0.12 -1.42 16 20 C -0.01 -0.06 9.53 22.53 0.21 0.16 16 21 C -0.08 -0.58 10.09 22.34 0.23 -0.35 16 22 C 0.24 4.05 8.02 134.16 1.08 5.13 16 23 N -0.35 -8.03 12.26 -55.53 -0.68 -8.71 16 24 N -0.02 -0.65 13.35 37.02 0.49 -0.15 16 25 N -0.13 -3.05 13.99 37.02 0.52 -2.53 16 26 N -0.31 -5.59 3.92 -192.06 -0.75 -6.35 16 27 C 0.17 2.21 10.77 83.75 0.90 3.12 16 28 C -0.17 -4.96 9.65 22.39 0.22 -4.75 16 29 H 0.28 14.95 8.31 -92.71 -0.77 14.17 16 30 H 0.11 4.48 5.64 -2.91 -0.02 4.47 16 31 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.08 1.35 8.08 -2.38 -0.02 1.33 16 34 H 0.10 1.32 8.08 -2.39 -0.02 1.30 16 35 H 0.42 2.72 6.50 -92.71 -0.60 2.12 16 36 H 0.20 -0.58 6.44 -2.91 -0.02 -0.60 16 37 H 0.21 0.17 8.06 -2.91 -0.02 0.15 16 38 H 0.20 2.35 7.57 -2.91 -0.02 2.33 16 39 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -74.61 349.79 5.06 -69.55 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.54 Total: 6.34 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 5.52 Total: -15.94 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -2.70 Total: -80.74 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.26 Total: -24.06 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.96 Total: 44.84 kcal Total: -74.61 5.06 -69.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116255067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.910 kcal (2) G-P(sol) polarization free energy of solvation -74.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds