Wall clock time and date at job start Tue Mar 31 2020 22:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47345 * 2 1 4 4 C 1.50695 * 109.47221 * 239.99473 * 2 1 3 5 5 H 1.08002 * 120.00665 * 241.34992 * 4 2 1 6 6 C 1.37878 * 119.99620 * 61.34918 * 4 2 1 7 7 N 1.31516 * 120.00005 * 193.97431 * 6 4 2 8 8 Si 1.86795 * 120.00079 * 13.97776 * 6 4 2 9 9 H 1.48506 * 109.47163 * 84.54798 * 8 6 4 10 10 H 1.48501 * 109.47093 * 204.54676 * 8 6 4 11 11 H 1.48496 * 109.47341 * 324.54827 * 8 6 4 12 12 C 1.53006 * 109.46758 * 119.99775 * 2 1 3 13 13 N 1.46501 * 109.47276 * 299.99683 * 12 2 1 14 14 C 1.34778 * 119.99736 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00310 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99524 * 180.02562 * 14 13 12 17 17 N 1.40095 * 120.00488 * 359.97438 * 16 14 13 18 18 C 1.34777 * 120.00693 * 180.27603 * 17 16 14 19 19 O 1.21561 * 119.99240 * 359.72943 * 18 17 16 20 20 C 1.47761 * 120.00544 * 179.72420 * 18 17 16 21 21 C 1.39633 * 120.15504 * 0.02562 * 20 18 17 22 22 C 1.37898 * 119.86447 * 180.02562 * 21 20 18 23 23 C 1.38426 * 120.18626 * 359.97438 * 22 21 20 24 24 C 1.38270 * 120.31161 * 0.02562 * 23 22 21 25 25 C 1.38159 * 120.13379 * 359.72023 * 24 23 22 26 26 Cl 1.73601 * 120.09315 * 180.27814 * 25 24 23 27 27 H 1.09009 * 109.47179 * 309.36853 * 1 2 3 28 28 H 1.08996 * 109.47088 * 69.36747 * 1 2 3 29 29 H 1.08999 * 109.47226 * 189.37074 * 1 2 3 30 30 H 1.08994 * 109.47157 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47090 * 299.99937 * 3 2 1 32 32 H 1.09005 * 109.47110 * 59.99804 * 3 2 1 33 33 H 0.97005 * 120.00048 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46653 * 179.97438 * 12 2 1 35 35 H 1.09005 * 109.46990 * 60.00145 * 12 2 1 36 36 H 0.96995 * 119.99757 * 0.02562 * 13 12 2 37 37 H 0.97006 * 120.00160 * 180.02562 * 16 14 13 38 38 H 0.97008 * 119.99907 * 0.02562 * 17 16 14 39 39 H 1.07997 * 120.06709 * 359.97438 * 21 20 18 40 40 H 1.07997 * 119.90805 * 179.97438 * 22 21 20 41 41 H 1.07996 * 119.84599 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.93009 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6351 -1.6011 -1.1314 6 6 1.7223 -0.2235 -2.4824 7 7 1.9158 -0.9727 -3.5459 8 14 1.0276 1.5005 -2.6684 9 1 2.1418 2.4815 -2.7084 10 1 0.2471 1.5864 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4455 14 6 1.8768 -0.4913 3.6696 15 8 2.5757 -1.4800 3.7812 16 7 1.4271 0.1438 4.7700 17 7 0.6222 1.2832 4.6414 18 6 0.1771 1.9216 5.7418 19 8 0.4701 1.5058 6.8459 20 6 -0.6668 3.1269 5.6062 21 6 -1.0056 3.6071 4.3395 22 6 -1.7931 4.7328 4.2199 23 6 -2.2486 5.3870 5.3516 24 6 -1.9176 4.9181 6.6096 25 6 -1.1338 3.7884 6.7446 26 17 -0.7249 3.1963 8.3244 27 1 -0.3634 0.6519 0.7945 28 1 -0.3633 0.3621 -0.9617 29 1 -0.3633 -1.0139 0.1673 30 1 3.1300 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6980 -0.6299 -4.4268 34 1 3.1299 -0.7216 1.2491 35 1 1.6765 -1.7489 1.2493 36 1 0.9937 0.7579 2.3564 37 1 1.6614 -0.1876 5.6511 38 1 0.3882 1.6149 3.7604 39 1 -0.6510 3.0984 3.4554 40 1 -2.0552 5.1050 3.2406 41 1 -2.8646 6.2684 5.2516 42 1 -2.2767 5.4331 7.4883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117866772.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:48 Heat of formation + Delta-G solvation = -2.854968 kcal Electronic energy + Delta-G solvation = -26986.302359 eV Core-core repulsion = 22994.144843 eV Total energy + Delta-G solvation = -3992.157516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.87948 -40.88759 -39.42764 -38.50035 -37.41544 -36.86829 -34.96248 -33.51039 -33.15669 -31.70760 -31.08496 -27.99743 -27.57349 -26.85325 -25.23154 -23.66921 -22.56125 -22.25432 -21.05055 -20.35145 -19.15194 -18.21766 -18.00898 -17.20908 -17.04750 -17.00378 -16.66938 -16.15328 -16.07337 -15.89825 -15.54202 -15.14213 -15.05348 -14.73717 -14.68430 -14.37147 -14.26050 -13.97696 -13.71685 -13.05201 -12.90866 -12.55651 -12.54074 -12.47575 -12.36235 -12.23022 -12.14297 -11.91816 -11.74283 -11.72396 -11.03621 -10.83438 -10.59094 -10.36240 -10.27629 -10.16688 -9.80827 -9.40886 -8.26029 -6.28714 -0.37832 0.17008 0.63964 1.16798 1.39333 1.43285 1.56586 1.57872 1.92734 1.98155 2.39580 2.67867 3.10184 3.13763 3.65622 3.82751 4.00378 4.06337 4.27615 4.30398 4.35366 4.42713 4.45543 4.73063 4.75956 4.83809 4.86960 4.96045 5.00047 5.08678 5.14650 5.22407 5.27679 5.36483 5.37546 5.50115 5.55416 5.72876 5.75269 5.84152 6.15610 6.33165 6.55392 6.76432 7.11392 7.32599 7.36734 8.91269 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003017 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.048947 B = 9277.506531 C =10953.882503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 C -0.149 4.149 4 C -0.519 4.519 5 H 0.026 0.974 6 C 0.013 3.987 7 N -0.949 5.949 8 Si 0.946 3.054 9 H -0.282 1.282 10 H -0.319 1.319 11 H -0.192 1.192 12 C 0.172 3.828 13 N -0.718 5.718 14 C 0.712 3.288 15 O -0.615 6.615 16 N -0.527 5.527 17 N -0.512 5.512 18 C 0.555 3.445 19 O -0.543 6.543 20 C -0.143 4.143 21 C -0.074 4.074 22 C -0.116 4.116 23 C -0.068 4.068 24 C -0.124 4.124 25 C -0.004 4.004 26 Cl -0.057 7.057 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.046 0.954 35 H 0.044 0.956 36 H 0.403 0.597 37 H 0.441 0.559 38 H 0.430 0.570 39 H 0.157 0.843 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.195 20.053 18.906 30.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.027 3.973 3 C -0.206 4.206 4 C -0.557 4.557 5 H 0.044 0.956 6 C -0.184 4.184 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.249 1.249 11 H -0.116 1.116 12 C 0.047 3.953 13 N -0.376 5.376 14 C 0.411 3.589 15 O -0.492 6.492 16 N -0.283 5.283 17 N -0.266 5.266 18 C 0.344 3.656 19 O -0.419 6.419 20 C -0.149 4.149 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.086 4.086 24 C -0.142 4.142 25 C -0.032 4.032 26 Cl -0.027 7.027 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.241 0.759 37 H 0.287 0.713 38 H 0.275 0.725 39 H 0.175 0.825 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.443 18.936 19.558 29.931 hybrid contribution 0.220 0.063 -0.613 0.654 sum -12.222 18.998 18.945 29.483 Atomic orbital electron populations 1.22248 0.95732 1.00857 1.01195 1.18663 0.94034 0.93237 0.91330 1.22320 1.01170 0.96572 1.00515 1.21020 1.32971 1.11122 0.90605 0.95600 1.25937 0.95427 1.01944 0.95113 1.70131 1.50758 1.38492 0.99467 0.86335 0.79490 0.79474 0.77253 1.20965 1.24858 1.11560 1.21060 0.97586 0.94897 0.81717 1.45094 1.55733 1.33089 1.03685 1.15776 0.80209 0.82238 0.80646 1.91005 1.44612 1.28720 1.84830 1.44393 1.51897 1.22765 1.09196 1.44716 1.49456 1.21706 1.10673 1.18568 0.80217 0.83678 0.83176 1.90899 1.58355 1.66998 1.25622 1.19379 1.03831 0.96914 0.94742 1.21657 0.96153 0.96622 0.94888 1.21684 0.96186 0.94292 1.01207 1.21845 0.96503 0.99621 0.90611 1.21397 0.97799 0.94348 1.00682 1.21278 0.99225 0.96546 0.86135 1.98422 1.92320 1.87967 1.24020 0.91074 0.93337 0.94117 0.93515 0.94374 0.90414 0.92751 0.93532 0.93737 0.75904 0.71338 0.72458 0.82513 0.81290 0.81128 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.75 7.53 71.98 0.54 -4.20 16 2 C 0.03 1.10 0.50 -52.93 -0.03 1.08 16 3 C -0.15 -4.87 7.52 71.98 0.54 -4.33 16 4 C -0.52 -27.29 8.62 25.60 0.22 -27.07 16 5 H 0.03 1.57 7.99 -2.91 -0.02 1.55 16 6 C 0.01 0.70 5.32 84.65 0.45 1.15 16 7 N -0.95 -57.43 13.96 21.45 0.30 -57.13 16 8 Si 0.95 39.55 22.79 68.60 1.56 41.12 16 9 H -0.28 -11.62 7.10 99.48 0.71 -10.91 16 10 H -0.32 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.19 -6.32 4.65 99.48 0.46 -5.85 16 12 C 0.17 6.35 4.49 86.38 0.39 6.74 16 13 N -0.72 -19.96 4.97 -478.51 -2.38 -22.33 16 14 C 0.71 22.04 8.68 179.06 1.55 23.59 16 15 O -0.61 -24.88 17.18 -3.99 -0.07 -24.95 16 16 N -0.53 -13.05 6.26 -184.75 -1.16 -14.21 16 17 N -0.51 -9.45 6.21 -175.66 -1.09 -10.54 16 18 C 0.56 11.64 7.88 86.76 0.68 12.33 16 19 O -0.54 -15.02 13.81 -3.91 -0.05 -15.07 16 20 C -0.14 -2.26 5.88 -20.07 -0.12 -2.37 16 21 C -0.07 -0.65 9.54 22.53 0.21 -0.43 16 22 C -0.12 -0.58 10.03 22.23 0.22 -0.36 16 23 C -0.07 -0.33 10.04 22.32 0.22 -0.11 16 24 C -0.12 -1.19 9.82 22.26 0.22 -0.97 16 25 C 0.00 -0.06 6.35 22.60 0.14 0.08 16 26 Cl -0.06 -1.19 26.02 -2.72 -0.07 -1.26 16 27 H 0.07 1.61 7.13 -2.38 -0.02 1.59 16 28 H 0.05 1.71 4.30 -2.39 -0.01 1.70 16 29 H 0.04 1.42 8.12 -2.39 -0.02 1.40 16 30 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.30 2.25 -2.39 -0.01 1.30 16 32 H 0.08 1.73 6.86 -2.38 -0.02 1.72 16 33 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.40 8.06 4.18 -92.71 -0.39 7.67 16 37 H 0.44 11.40 8.10 -213.32 -1.73 9.67 16 38 H 0.43 5.31 4.74 -213.31 -1.01 4.30 16 39 H 0.16 0.54 6.41 -2.91 -0.02 0.52 16 40 H 0.17 -0.09 8.06 -2.91 -0.02 -0.11 16 41 H 0.17 -0.25 8.06 -2.91 -0.02 -0.27 16 42 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 Total: -1.00 -77.86 349.23 0.05 -77.82 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: -2.26 Total: 21.44 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.26 Total: 5.12 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.33 Total: -104.21 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.12 Total: -40.02 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.56 Total: 41.12 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.07 Total: -1.26 kcal Total: -77.86 0.05 -77.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117866772.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.960 kcal (2) G-P(sol) polarization free energy of solvation -77.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds