Wall clock time and date at job start Tue Mar 31 2020 22:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38237 * 119.52774 * 2 1 4 4 C 1.38543 * 119.26778 * 179.77513 * 3 2 1 5 5 C 1.39263 * 118.37045 * 0.49111 * 4 3 2 6 6 N 1.39791 * 120.49906 * 179.73033 * 5 4 3 7 7 C 1.34784 * 119.99982 * 24.62000 * 6 5 4 8 8 O 1.21381 * 119.99518 * 5.57791 * 7 6 5 9 9 C 1.49348 * 119.99800 * 185.58413 * 7 6 5 10 10 O 1.21354 * 120.00285 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99441 * 179.97438 * 9 7 6 12 12 C 1.46499 * 119.99851 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47264 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47406 * 300.00392 * 13 12 11 15 15 C 1.52999 * 109.46786 * 60.00504 * 13 12 11 16 16 C 1.50701 * 109.47072 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00317 * 0.02562 * 16 13 12 18 18 C 1.37876 * 119.99807 * 180.02562 * 16 13 12 19 19 N 1.31513 * 120.00011 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99656 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47305 * 90.00271 * 20 18 16 22 22 H 1.48504 * 109.46976 * 209.99876 * 20 18 16 23 23 H 1.48493 * 109.47349 * 329.99785 * 20 18 16 24 24 C 1.39063 * 119.00564 * 359.75396 * 5 4 3 25 25 Cl 1.73599 * 119.68886 * 179.97438 * 24 5 4 26 26 N 1.31882 * 120.62617 * 359.97438 * 24 5 4 27 27 H 1.09004 * 109.46466 * 269.72903 * 1 2 3 28 28 H 1.08998 * 109.46751 * 29.71956 * 1 2 3 29 29 H 1.08990 * 109.47178 * 149.72973 * 1 2 3 30 30 H 1.07997 * 120.36525 * 0.02562 * 3 2 1 31 31 H 1.08001 * 120.81713 * 180.24716 * 4 3 2 32 32 H 0.96998 * 120.00530 * 204.62252 * 6 5 4 33 33 H 0.97004 * 120.00209 * 359.97438 * 11 9 7 34 34 H 1.08997 * 109.47292 * 300.00265 * 12 11 9 35 35 H 1.09010 * 109.47007 * 60.00089 * 12 11 9 36 36 H 1.09005 * 109.47075 * 59.99746 * 14 13 12 37 37 H 1.08996 * 109.47129 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.46952 * 300.00245 * 14 13 12 39 39 H 1.09005 * 109.47486 * 59.99785 * 15 13 12 40 40 H 1.08996 * 109.46993 * 179.97438 * 15 13 12 41 41 H 1.09005 * 109.47015 * 299.99837 * 15 13 12 42 42 H 0.96999 * 119.99315 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1883 1.2028 0.0000 4 6 3.5737 1.1965 0.0047 5 6 4.2299 -0.0318 -0.0011 6 7 5.6266 -0.0900 -0.0024 7 6 6.3445 0.9400 0.4880 8 8 5.7806 1.8727 1.0222 9 6 7.8336 0.9337 0.3737 10 8 8.3972 0.0009 -0.1601 11 7 8.5513 1.9639 0.8636 12 6 10.0120 1.9575 0.7521 13 6 10.5772 3.2324 1.3815 14 6 10.0153 4.4540 0.6515 15 6 10.1787 3.2923 2.8575 16 6 12.0799 3.2255 1.2674 17 1 12.5816 2.3951 0.7930 18 6 12.8141 4.2793 1.7686 19 7 12.2032 5.2903 2.3468 20 14 14.6767 4.2710 1.6264 21 1 15.0789 4.9204 0.3530 22 1 15.2637 5.0164 2.7690 23 1 15.1683 2.8700 1.6445 24 6 3.4749 -1.1996 -0.0063 25 17 4.2746 -2.7404 -0.0143 26 7 2.1571 -1.1477 -0.0051 27 1 -0.3632 -0.0049 1.0277 28 1 -0.3633 0.8925 -0.5095 29 1 -0.3633 -0.8875 -0.5180 30 1 1.6466 2.1371 0.0004 31 1 4.1312 2.1215 0.0089 32 1 6.0792 -0.8716 -0.3561 33 1 8.1007 2.7096 1.2900 34 1 10.4123 1.0870 1.2718 35 1 10.2960 1.9152 -0.2995 36 1 8.9284 4.4587 0.7345 37 1 10.4176 5.3622 1.1003 38 1 10.2992 4.4112 -0.4000 39 1 10.5790 2.4220 3.3776 40 1 10.5817 4.2003 3.3060 41 1 9.0918 3.2971 2.9405 42 1 12.7199 6.0315 2.6997 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120784924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:43 Heat of formation + Delta-G solvation = -42.362198 kcal Electronic energy + Delta-G solvation = -26429.648335 eV Core-core repulsion = 22435.777657 eV Total energy + Delta-G solvation = -3993.870678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49621 -40.21471 -38.64823 -37.09857 -36.63486 -35.75312 -33.46030 -32.61267 -32.13169 -30.98529 -28.03147 -26.32815 -25.79606 -25.34761 -24.16575 -23.93891 -22.28841 -20.41656 -19.31010 -18.81378 -17.70394 -17.20952 -16.97128 -16.31351 -15.88187 -15.71261 -15.24402 -14.97068 -14.80484 -14.60440 -14.25208 -13.88721 -13.57385 -13.34452 -13.00365 -12.91865 -12.85954 -12.54945 -12.30463 -11.95630 -11.70325 -11.62075 -11.48016 -11.32566 -11.25546 -10.93619 -10.75382 -10.47202 -10.28766 -10.20722 -9.97722 -9.73022 -9.62901 -9.35396 -8.87412 -8.75905 -8.57724 -8.43183 -6.08085 -4.19003 0.35472 0.73075 1.39404 1.44395 2.13225 3.07373 3.24683 3.30605 3.32149 3.35162 3.54357 3.96053 4.24938 4.33472 4.42634 4.51217 4.66577 4.87670 5.17904 5.18850 5.20963 5.38805 5.49480 5.69609 5.76153 6.00387 6.14092 6.17197 6.37528 6.47634 6.62716 6.75964 6.76754 6.84766 6.92576 7.24049 7.29758 7.35276 7.47876 7.61967 7.70848 7.93430 8.02983 8.15450 8.31757 8.81133 9.47268 10.93357 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.002227 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.912292 B =12568.257880 C =13381.300336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.123 3.877 3 C -0.142 4.142 4 C -0.073 4.073 5 C 0.116 3.884 6 N -0.640 5.640 7 C 0.512 3.488 8 O -0.495 6.495 9 C 0.499 3.501 10 O -0.526 6.526 11 N -0.675 5.675 12 C 0.127 3.873 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.508 4.508 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.150 3.850 25 Cl -0.023 7.023 26 N -0.456 5.456 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.149 0.851 31 H 0.168 0.832 32 H 0.428 0.572 33 H 0.412 0.588 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.097 -8.210 -4.567 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.016 4.016 3 C -0.163 4.163 4 C -0.101 4.101 5 C 0.017 3.983 6 N -0.288 5.288 7 C 0.295 3.705 8 O -0.369 6.369 9 C 0.277 3.723 10 O -0.404 6.404 11 N -0.326 5.326 12 C 0.005 3.995 13 C 0.055 3.945 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.018 4.018 25 Cl 0.005 6.995 26 N -0.168 5.168 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.166 0.834 31 H 0.186 0.814 32 H 0.268 0.732 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.313 -8.899 -4.468 23.525 hybrid contribution 1.605 0.509 -0.003 1.683 sum -19.709 -8.390 -4.471 21.882 Atomic orbital electron populations 1.20717 0.87821 1.03814 1.03476 1.21196 0.97173 0.87029 0.96233 1.22031 0.93982 0.99683 1.00572 1.21933 0.94573 0.97651 0.95926 1.18313 0.83613 0.93566 1.02819 1.43211 1.03595 1.22005 1.59952 1.20826 0.89598 0.82181 0.77914 1.90728 1.72119 1.34226 1.39784 1.19569 0.86445 0.84599 0.81646 1.90768 1.71449 1.34751 1.43439 1.46235 1.09700 1.21014 1.55685 1.22025 0.74562 1.01569 1.01307 1.18394 0.95394 0.88598 0.92107 1.21865 0.95424 1.02925 0.98949 1.21868 0.95696 1.02995 0.98637 1.20929 0.89809 1.05435 1.38464 0.92302 1.24884 0.98533 0.95328 0.94755 1.69801 1.35069 1.08718 1.38634 0.86546 0.85378 0.78174 0.77621 1.20683 1.21240 1.19885 1.21313 0.89842 0.86421 1.04207 1.98422 1.76652 1.27837 1.96560 1.66802 1.06792 1.30292 1.12904 0.90077 0.90220 0.90232 0.83354 0.81448 0.73247 0.75062 0.91711 0.91722 0.97329 0.89375 0.95276 0.95270 0.89359 0.97319 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.17 36.01 0.37 -0.20 16 2 C 0.12 1.11 6.78 -82.56 -0.56 0.55 16 3 C -0.14 -1.20 9.73 -39.47 -0.38 -1.59 16 4 C -0.07 -0.78 8.82 -39.09 -0.34 -1.13 16 5 C 0.12 1.37 6.45 -83.54 -0.54 0.83 16 6 N -0.64 -7.85 5.18 -10.17 -0.05 -7.90 16 7 C 0.51 7.23 7.71 -11.63 -0.09 7.14 16 8 O -0.50 -7.41 13.68 5.47 0.07 -7.33 16 9 C 0.50 8.11 7.89 -11.63 -0.09 8.02 16 10 O -0.53 -9.48 16.48 5.49 0.09 -9.39 16 11 N -0.67 -11.60 4.95 -60.76 -0.30 -11.90 16 12 C 0.13 2.51 4.50 -4.04 -0.02 2.49 16 13 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 14 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 15 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 16 C -0.51 -12.79 8.01 -34.44 -0.28 -13.06 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 19 N -0.88 -23.03 9.35 55.43 0.52 -22.51 16 20 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.15 1.75 7.30 -17.22 -0.13 1.62 16 25 Cl -0.02 -0.25 27.95 -51.86 -1.45 -1.70 16 26 N -0.46 -5.18 10.24 -6.45 -0.07 -5.24 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.17 1.86 5.89 -52.49 -0.31 1.55 16 32 H 0.43 4.91 7.25 -40.82 -0.30 4.61 16 33 H 0.41 6.86 5.63 -40.82 -0.23 6.63 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 36 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.16 6.07 -51.93 -0.31 1.84 16 41 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -27.68 363.53 -7.46 -35.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -5.10 Total: 7.99 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: -1.63 Total: 2.18 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.10 Total: -47.56 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.17 Total: -16.72 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.45 Total: -1.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.68 -7.46 -35.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120784924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.228 kcal (2) G-P(sol) polarization free energy of solvation -27.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds