Wall clock time and date at job start Tue Mar 31 2020 22:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 H 1.08993 * 109.47419 * 35.00624 * 17 16 14 19 19 C 1.50708 * 109.47371 * 275.00038 * 17 16 14 20 20 N 1.34769 * 119.99975 * 180.02562 * 19 17 16 21 21 O 1.21286 * 119.99685 * 0.02562 * 19 17 16 22 22 C 1.50704 * 109.47243 * 155.00638 * 17 16 14 23 23 C 1.38245 * 119.98410 * 39.71986 * 22 17 16 24 24 C 1.38219 * 120.00936 * 179.73253 * 23 22 17 25 25 C 1.38351 * 119.98452 * 0.54635 * 24 23 22 26 26 Cl 1.73605 * 120.00856 * 179.74967 * 25 24 23 27 27 C 1.38346 * 119.97694 * 359.73117 * 25 24 23 28 28 C 1.38214 * 119.98502 * 359.97438 * 27 25 24 29 29 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 31 31 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.00910 * 110.99485 * 296.04674 * 13 11 10 35 35 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 36 36 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 37 37 H 0.97004 * 120.00428 * 0.02562 * 20 19 17 38 38 H 0.97008 * 119.99919 * 179.97438 * 20 19 17 39 39 H 1.07992 * 119.99628 * 0.02562 * 23 22 17 40 40 H 1.08004 * 120.00509 * 180.27681 * 24 23 22 41 41 H 1.07999 * 120.00876 * 179.97438 * 27 25 24 42 42 H 1.08001 * 119.99324 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 1 0.7920 -5.0090 0.8377 13 7 0.7223 -5.1156 -1.2593 14 6 2.4552 -6.1301 0.1090 15 8 2.7823 -6.7514 -0.8799 16 7 2.9640 -6.4620 1.3121 17 6 3.9124 -7.5728 1.4252 18 1 4.5431 -7.6040 0.5368 19 6 3.1547 -8.8697 1.5492 20 7 3.8249 -10.0330 1.6667 21 8 1.9419 -8.8663 1.5431 22 6 4.7737 -7.3757 2.6461 23 6 4.2155 -6.8919 3.8146 24 6 5.0039 -6.7162 4.9363 25 6 6.3540 -7.0139 4.8860 26 17 7.3461 -6.7873 6.2925 27 6 6.9132 -7.4927 3.7146 28 6 6.1226 -7.6737 2.5954 29 1 -0.4851 0.8401 0.0004 30 1 0.6283 -2.5592 0.8921 31 1 0.6202 -2.5546 -0.8878 32 1 2.8677 -3.6020 -0.9008 33 1 2.8758 -3.6067 0.8792 34 1 0.0171 -4.3973 -1.3305 35 1 1.3382 -5.0980 -2.0583 36 1 2.7022 -5.9653 2.1032 37 1 4.7949 -10.0357 1.6719 38 1 3.3372 -10.8677 1.7469 39 1 3.1624 -6.6557 3.8525 40 1 4.5668 -6.3424 5.8504 41 1 7.9672 -7.7248 3.6747 42 1 6.5589 -8.0478 1.6810 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122421478.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:47 Heat of formation + Delta-G solvation = -95.396519 kcal Electronic energy + Delta-G solvation = -26603.601656 eV Core-core repulsion = 22607.431237 eV Total energy + Delta-G solvation = -3996.170419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85173 -40.35557 -39.82180 -37.57012 -37.09938 -35.90490 -34.84173 -34.78240 -32.32919 -32.05276 -31.68150 -28.89151 -27.55410 -25.50067 -24.03347 -23.32708 -22.53508 -21.43180 -21.14158 -19.14180 -18.74932 -18.48439 -18.13438 -17.74480 -17.00312 -16.74613 -16.49581 -16.07139 -15.89921 -15.79380 -15.50946 -15.43875 -14.93567 -14.66651 -14.58023 -14.50420 -14.40233 -14.06434 -13.73388 -13.45000 -12.94428 -12.71091 -12.68792 -12.57739 -12.50415 -12.45775 -11.81536 -11.80322 -11.72750 -11.55030 -11.29251 -10.84163 -10.72079 -10.55110 -10.29657 -10.08794 -9.68915 -9.63066 -8.20058 -6.30534 -0.07072 0.24156 1.11395 1.40905 1.41086 1.47962 1.50770 1.52258 1.91794 2.39698 2.41277 2.77561 3.13717 3.31151 3.66023 3.74755 3.75816 3.87045 3.96178 4.08404 4.13778 4.23243 4.26646 4.44572 4.60094 4.67242 4.84141 4.91189 5.04207 5.09902 5.14592 5.20263 5.36483 5.48028 5.66510 5.67933 5.81862 5.83731 6.05434 6.22050 6.34687 6.37456 6.48710 6.85176 7.11258 7.25833 7.38627 8.90808 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009087 B = 0.003056 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3080.710577 B = 9159.092106 C =11649.775017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.118 4.118 11 C 0.081 3.919 12 H 0.103 0.897 13 N -0.831 5.831 14 C 0.538 3.462 15 O -0.563 6.563 16 N -0.703 5.703 17 C 0.174 3.826 18 H 0.130 0.870 19 C 0.508 3.492 20 N -0.828 5.828 21 O -0.576 6.576 22 C -0.097 4.097 23 C -0.102 4.102 24 C -0.110 4.110 25 C -0.037 4.037 26 Cl -0.070 7.070 27 C -0.103 4.103 28 C -0.083 4.083 29 H 0.263 0.737 30 H 0.000 1.000 31 H 0.002 0.998 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.353 0.647 35 H 0.345 0.655 36 H 0.413 0.587 37 H 0.417 0.583 38 H 0.410 0.590 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.948 -20.023 10.874 28.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.075 0.925 9 C -0.008 4.008 10 C -0.158 4.158 11 C -0.034 4.034 12 H 0.121 0.879 13 N -0.363 5.363 14 C 0.325 3.675 15 O -0.440 6.440 16 N -0.356 5.356 17 C 0.065 3.935 18 H 0.148 0.852 19 C 0.291 3.709 20 N -0.393 5.393 21 O -0.454 6.454 22 C -0.098 4.098 23 C -0.120 4.120 24 C -0.128 4.128 25 C -0.064 4.064 26 Cl -0.041 7.041 27 C -0.121 4.121 28 C -0.101 4.101 29 H 0.072 0.928 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.251 0.749 37 H 0.249 0.751 38 H 0.242 0.758 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 16.128 -20.864 10.548 28.402 hybrid contribution 0.384 1.915 0.301 1.976 sum 16.511 -18.949 10.849 27.375 Atomic orbital electron populations 1.70071 1.07556 1.27729 1.51418 1.25880 0.95714 1.03030 0.94795 0.85533 0.78782 0.78920 0.78347 1.20099 1.20813 1.18809 1.21619 0.93419 0.92316 1.50728 0.92470 1.18974 0.94065 0.92106 0.95658 1.22124 0.98737 0.93258 1.01705 1.21379 0.94633 0.91437 0.95934 0.87891 1.58723 1.18416 1.55809 1.03315 1.20677 0.80270 0.83854 0.82717 1.90605 1.60839 1.54600 1.37974 1.45613 1.46328 1.33477 1.10150 1.19651 0.89859 0.84644 0.99387 0.85209 1.21110 0.87822 0.87181 0.74819 1.43562 1.12130 1.08056 1.75564 1.90774 1.15873 1.87713 1.51068 1.19556 0.94689 1.02470 0.93071 1.21047 1.00660 0.98307 0.91996 1.21180 0.91950 0.99951 0.99740 1.21222 0.92181 1.03234 0.89745 1.98392 1.69639 1.95597 1.40491 1.21318 1.01847 0.98497 0.90464 1.21252 0.91023 0.98227 0.99647 0.92783 0.98153 0.97996 0.93203 0.91328 0.83183 0.84161 0.74900 0.75148 0.75789 0.84906 0.83698 0.82222 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.66 13.29 21.45 0.28 -54.38 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 43.24 29.54 68.60 2.03 45.27 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.54 -29.66 9.11 25.60 0.23 -29.43 16 8 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 9 C 0.03 1.43 4.74 29.85 0.14 1.58 16 10 C -0.12 -4.59 4.78 30.59 0.15 -4.45 16 11 C 0.08 2.86 3.21 44.17 0.14 3.00 16 12 H 0.10 3.50 8.14 -2.38 -0.02 3.48 16 13 N -0.83 -30.13 8.94 -171.80 -1.54 -31.66 16 14 C 0.54 17.97 6.91 87.66 0.61 18.57 16 15 O -0.56 -21.68 15.91 -3.05 -0.05 -21.73 16 16 N -0.70 -18.04 4.56 -449.68 -2.05 -20.09 16 17 C 0.17 3.48 2.58 43.50 0.11 3.59 16 18 H 0.13 2.48 7.44 -2.39 -0.02 2.46 16 19 C 0.51 11.53 7.44 87.66 0.65 12.19 16 20 N -0.83 -10.41 8.77 -173.53 -1.52 -11.93 16 21 O -0.58 -19.24 17.16 -3.05 -0.05 -19.30 16 22 C -0.10 -1.40 4.74 -19.86 -0.09 -1.50 16 23 C -0.10 -1.58 9.05 22.27 0.20 -1.38 16 24 C -0.11 -1.58 9.83 22.29 0.22 -1.36 16 25 C -0.04 -0.50 6.32 22.32 0.14 -0.36 16 26 Cl -0.07 -0.98 28.96 -2.72 -0.08 -1.06 16 27 C -0.10 -1.03 9.83 22.29 0.22 -0.81 16 28 C -0.08 -0.79 9.50 22.26 0.21 -0.57 16 29 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.35 12.90 7.55 -89.69 -0.68 12.22 16 35 H 0.35 12.44 8.58 -89.70 -0.77 11.67 16 36 H 0.41 9.30 6.85 -92.70 -0.64 8.66 16 37 H 0.42 2.28 8.55 -92.71 -0.79 1.48 16 38 H 0.41 4.48 8.93 -92.70 -0.83 3.65 16 39 H 0.13 2.07 6.90 -2.91 -0.02 2.05 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 41 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.17 0.56 8.04 -2.91 -0.02 0.53 16 Total: -1.00 -76.55 376.39 -2.16 -78.71 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -2.58 Total: 36.42 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 3.39 Total: -0.24 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -4.82 Total: -118.07 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.10 Total: -41.03 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -76.55 -2.16 -78.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421478.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.689 kcal (2) G-P(sol) polarization free energy of solvation -76.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds