Wall clock time and date at job start Tue Mar 31 2020 22:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46899 * 270.00106 * 3 2 1 5 5 H 1.48498 * 109.47034 * 29.99699 * 3 2 1 6 6 H 1.48493 * 109.47515 * 149.99647 * 3 2 1 7 7 C 1.37880 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47270 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46495 * 55.00083 * 11 10 9 13 13 N 1.46896 * 109.47000 * 295.00563 * 11 10 9 14 14 C 1.50692 * 109.47381 * 174.99891 * 11 10 9 15 15 O 1.21284 * 119.99844 * 100.00065 * 14 11 10 16 16 N 1.34776 * 120.00367 * 280.00311 * 14 11 10 17 17 C 1.46503 * 120.00385 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.47006 * 324.99628 * 17 16 14 19 19 C 1.50693 * 109.47230 * 84.99739 * 17 16 14 20 20 N 1.34776 * 120.00120 * 179.97438 * 19 17 16 21 21 O 1.21278 * 119.99949 * 0.02562 * 19 17 16 22 22 C 1.50696 * 109.46990 * 205.00111 * 17 16 14 23 23 C 1.38247 * 119.98658 * 140.00167 * 22 17 16 24 24 C 1.38216 * 120.01497 * 179.97438 * 23 22 17 25 25 C 1.38357 * 119.98603 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 120.01134 * 180.02562 * 25 24 23 27 27 C 1.38347 * 119.97107 * 0.28224 * 25 24 23 28 28 C 1.38219 * 119.98930 * 359.40143 * 27 25 24 29 29 H 0.96999 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47278 * 59.99998 * 9 7 2 31 31 H 1.08999 * 109.46862 * 299.99632 * 9 7 2 32 32 H 1.09007 * 109.47316 * 59.99977 * 10 9 7 33 33 H 1.09000 * 109.47662 * 299.99908 * 10 9 7 34 34 H 1.00902 * 110.99835 * 176.04581 * 13 11 10 35 35 H 1.00902 * 110.99748 * 299.98814 * 13 11 10 36 36 H 0.97009 * 119.99797 * 0.02562 * 16 14 11 37 37 H 0.96999 * 120.00168 * 0.02562 * 20 19 17 38 38 H 0.96999 * 120.00369 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.99321 * 359.97438 * 23 22 17 40 40 H 1.08002 * 120.00776 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00661 * 179.71600 * 27 25 24 42 42 H 1.07997 * 119.99445 * 180.32231 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0072 -0.8405 13 7 0.7290 -5.1181 1.2566 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9575 -6.4592 -1.3291 17 6 3.9045 -7.5705 -1.4496 18 1 4.5396 -7.6042 -0.5644 19 6 3.1453 -8.8664 -1.5727 20 7 3.8139 -10.0300 -1.6964 21 8 1.9326 -8.8621 -1.5615 22 6 4.7599 -7.3710 -2.6741 23 6 6.1090 -7.6698 -2.6307 24 6 6.8939 -7.4875 -3.7537 25 6 6.3293 -7.0054 -4.9212 26 17 7.3145 -6.7769 -6.3322 27 6 4.9805 -6.7006 -4.9621 28 6 4.1952 -6.8895 -3.8404 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8721 -3.6043 0.8906 33 1 2.8720 -3.6044 -0.8894 34 1 0.1647 -5.9546 1.2547 35 1 1.3491 -5.1023 2.0524 36 1 2.6921 -5.9605 -2.1177 37 1 4.7839 -10.0335 -1.7058 38 1 3.3253 -10.8642 -1.7754 39 1 6.5497 -8.0457 -1.7192 40 1 7.9478 -7.7214 -3.7198 41 1 4.5401 -6.3199 -5.8718 42 1 3.1412 -6.6564 -3.8738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122421479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:50 Heat of formation + Delta-G solvation = -67.191558 kcal Electronic energy + Delta-G solvation = -26602.699075 eV Core-core repulsion = 22607.751715 eV Total energy + Delta-G solvation = -3994.947360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99757 -39.46319 -38.97964 -36.96701 -35.34243 -34.89209 -34.02491 -32.78002 -31.69790 -31.39476 -30.07011 -27.79124 -26.01565 -23.77280 -23.30187 -22.67914 -21.02443 -20.37914 -19.87267 -18.11507 -17.97724 -17.28381 -16.99135 -16.32499 -16.04276 -15.92191 -15.37988 -15.24877 -14.81643 -14.62895 -14.39556 -14.11474 -14.03451 -13.93879 -13.67453 -13.49522 -13.02482 -12.30941 -12.11062 -12.02686 -11.99948 -11.84313 -11.53033 -11.27354 -10.88602 -10.68014 -10.62424 -10.53888 -10.17996 -10.00826 -9.78969 -9.57741 -9.39437 -9.31250 -9.04394 -8.98035 -8.34533 -8.19577 -5.92308 -3.94510 0.50603 0.75590 1.67099 2.30397 2.61657 2.89468 3.04377 3.35424 3.42039 3.45244 3.53676 4.01047 4.22270 4.35941 4.51013 4.60321 4.70823 4.76442 4.85349 5.00713 5.12080 5.20177 5.39402 5.43174 5.57339 5.60504 5.70882 5.83450 5.85750 6.17041 6.20220 6.43696 6.45572 6.65341 6.95646 7.09436 7.31660 7.54053 7.77895 7.82942 7.92943 7.97910 8.14955 8.23389 8.49672 9.13556 9.68537 11.18557 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003061 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.364361 B = 9145.532302 C =11645.986830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.081 3.919 12 H 0.100 0.900 13 N -0.805 5.805 14 C 0.495 3.505 15 O -0.550 6.550 16 N -0.709 5.709 17 C 0.168 3.832 18 H 0.124 0.876 19 C 0.513 3.487 20 N -0.852 5.852 21 O -0.524 6.524 22 C -0.091 4.091 23 C -0.094 4.094 24 C -0.105 4.105 25 C -0.029 4.029 26 Cl -0.067 7.067 27 C -0.101 4.101 28 C -0.091 4.091 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.336 0.664 35 H 0.347 0.653 36 H 0.407 0.593 37 H 0.400 0.600 38 H 0.403 0.597 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.420 -21.559 -10.505 27.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.118 0.882 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.362 5.362 17 C 0.058 3.942 18 H 0.141 0.859 19 C 0.295 3.705 20 N -0.416 5.416 21 O -0.398 6.398 22 C -0.093 4.093 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.056 4.056 26 Cl -0.038 7.038 27 C -0.119 4.119 28 C -0.110 4.110 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.161 0.839 36 H 0.244 0.756 37 H 0.228 0.772 38 H 0.234 0.766 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.408 -20.936 -10.057 26.819 hybrid contribution 1.357 -0.138 -0.517 1.459 sum 14.765 -21.074 -10.574 27.820 Atomic orbital electron populations 1.69977 1.05939 1.26399 1.50815 1.24993 0.94798 0.99035 0.95510 0.86656 0.79888 0.83824 0.77975 1.20792 1.21276 1.19986 1.21276 0.92876 0.91314 1.50587 0.92993 1.19017 0.93556 0.89769 0.98271 1.21673 0.98862 0.92140 1.00678 1.21843 0.93405 0.92871 0.95351 0.88212 1.59008 1.26721 1.44420 1.03121 1.22857 0.81458 0.85503 0.82037 1.90635 1.60486 1.54401 1.37192 1.45919 1.46384 1.32687 1.11244 1.19564 0.90582 0.86124 0.97888 0.85889 1.20909 0.88397 0.85915 0.75283 1.43769 1.11197 1.09015 1.77660 1.90771 1.13695 1.86934 1.48392 1.19692 0.94155 1.01196 0.94207 1.20970 0.92184 0.99540 0.98546 1.21049 1.00761 0.99425 0.91127 1.21038 0.92272 1.02950 0.89295 1.98392 1.70062 1.95542 1.39764 1.21093 0.91714 0.99537 0.99599 1.20996 1.00538 0.97811 0.91624 0.93103 0.96840 0.94618 0.92795 0.92806 0.85238 0.83889 0.75603 0.77190 0.76619 0.84402 0.84357 0.84249 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.91 4.78 -26.73 -0.13 -2.03 16 11 C 0.08 1.39 3.15 -68.87 -0.22 1.18 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 13 N -0.81 -14.02 8.44 -5.66 -0.05 -14.07 16 14 C 0.49 7.90 6.90 -10.99 -0.08 7.83 16 15 O -0.55 -10.03 15.91 5.55 0.09 -9.94 16 16 N -0.71 -8.97 4.56 -56.07 -0.26 -9.23 16 17 C 0.17 1.74 2.58 -70.24 -0.18 1.56 16 18 H 0.12 1.27 7.44 -51.93 -0.39 0.89 16 19 C 0.51 5.79 7.44 -10.99 -0.08 5.71 16 20 N -0.85 -5.83 8.77 31.22 0.27 -5.56 16 21 O -0.52 -8.27 17.16 5.56 0.10 -8.17 16 22 C -0.09 -0.74 4.74 -104.62 -0.50 -1.23 16 23 C -0.09 -0.58 9.51 -39.59 -0.38 -0.96 16 24 C -0.10 -0.68 9.83 -39.55 -0.39 -1.06 16 25 C -0.03 -0.22 6.32 -39.50 -0.25 -0.47 16 26 Cl -0.07 -0.51 28.96 -51.86 -1.50 -2.01 16 27 C -0.10 -0.78 9.83 -39.55 -0.39 -1.17 16 28 C -0.09 -0.75 9.05 -39.59 -0.36 -1.10 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.34 5.29 9.06 -39.29 -0.36 4.94 16 35 H 0.35 6.03 8.58 -39.29 -0.34 5.70 16 36 H 0.41 4.54 6.87 -40.82 -0.28 4.26 16 37 H 0.40 1.56 8.55 -40.82 -0.35 1.21 16 38 H 0.40 2.38 8.93 -40.82 -0.36 2.02 16 39 H 0.14 0.52 8.04 -52.48 -0.42 0.10 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.14 1.05 6.92 -52.49 -0.36 0.69 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -36.12 378.37 -8.76 -44.88 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.34 Total: 12.48 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.49 Total: -4.57 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.71 Total: -55.06 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.18 Total: -18.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.12 -8.76 -44.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.315 kcal (2) G-P(sol) polarization free energy of solvation -36.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds