Wall clock time and date at job start Tue Mar 31 2020 22:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00024 * 2 1 4 4 H 1.48500 * 109.46899 * 270.00106 * 3 2 1 5 5 H 1.48498 * 109.47034 * 29.99699 * 3 2 1 6 6 H 1.48493 * 109.47515 * 149.99647 * 3 2 1 7 7 C 1.37880 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.46841 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47270 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.46495 * 55.00083 * 11 10 9 13 13 N 1.46896 * 109.47000 * 295.00563 * 11 10 9 14 14 C 1.50692 * 109.47381 * 174.99891 * 11 10 9 15 15 O 1.21284 * 119.99844 * 100.00065 * 14 11 10 16 16 N 1.34776 * 120.00367 * 280.00311 * 14 11 10 17 17 C 1.46503 * 120.00385 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.47006 * 324.99628 * 17 16 14 19 19 C 1.50693 * 109.47230 * 84.99739 * 17 16 14 20 20 N 1.34776 * 120.00120 * 179.97438 * 19 17 16 21 21 O 1.21278 * 119.99949 * 0.02562 * 19 17 16 22 22 C 1.50696 * 109.46990 * 205.00111 * 17 16 14 23 23 C 1.38247 * 119.98658 * 140.00167 * 22 17 16 24 24 C 1.38216 * 120.01497 * 179.97438 * 23 22 17 25 25 C 1.38357 * 119.98603 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 120.01134 * 180.02562 * 25 24 23 27 27 C 1.38347 * 119.97107 * 0.28224 * 25 24 23 28 28 C 1.38219 * 119.98930 * 359.40143 * 27 25 24 29 29 H 0.96999 * 119.99911 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47278 * 59.99998 * 9 7 2 31 31 H 1.08999 * 109.46862 * 299.99632 * 9 7 2 32 32 H 1.09007 * 109.47316 * 59.99977 * 10 9 7 33 33 H 1.09000 * 109.47662 * 299.99908 * 10 9 7 34 34 H 1.00902 * 110.99835 * 176.04581 * 13 11 10 35 35 H 1.00902 * 110.99748 * 299.98814 * 13 11 10 36 36 H 0.97009 * 119.99797 * 0.02562 * 16 14 11 37 37 H 0.96999 * 120.00168 * 0.02562 * 20 19 17 38 38 H 0.96999 * 120.00369 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.99321 * 359.97438 * 23 22 17 40 40 H 1.08002 * 120.00776 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00661 * 179.71600 * 27 25 24 42 42 H 1.07997 * 119.99445 * 180.32231 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0072 -0.8405 13 7 0.7290 -5.1181 1.2566 14 6 2.4549 -6.1298 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9575 -6.4592 -1.3291 17 6 3.9045 -7.5705 -1.4496 18 1 4.5396 -7.6042 -0.5644 19 6 3.1453 -8.8664 -1.5727 20 7 3.8139 -10.0300 -1.6964 21 8 1.9326 -8.8621 -1.5615 22 6 4.7599 -7.3710 -2.6741 23 6 6.1090 -7.6698 -2.6307 24 6 6.8939 -7.4875 -3.7537 25 6 6.3293 -7.0054 -4.9212 26 17 7.3145 -6.7769 -6.3322 27 6 4.9805 -6.7006 -4.9621 28 6 4.1952 -6.8895 -3.8404 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 2.8721 -3.6043 0.8906 33 1 2.8720 -3.6044 -0.8894 34 1 0.1647 -5.9546 1.2547 35 1 1.3491 -5.1023 2.0524 36 1 2.6921 -5.9605 -2.1177 37 1 4.7839 -10.0335 -1.7058 38 1 3.3253 -10.8642 -1.7754 39 1 6.5497 -8.0457 -1.7192 40 1 7.9478 -7.7214 -3.7198 41 1 4.5401 -6.3199 -5.8718 42 1 3.1412 -6.6564 -3.8738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122421479.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:49 Heat of formation + Delta-G solvation = -95.844957 kcal Electronic energy + Delta-G solvation = -26603.941580 eV Core-core repulsion = 22607.751715 eV Total energy + Delta-G solvation = -3996.189865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90330 -40.43273 -39.85333 -37.57713 -36.83947 -35.96248 -34.84236 -34.78644 -32.34457 -32.07877 -31.89741 -28.83007 -27.58894 -25.30561 -24.03764 -23.34933 -22.48906 -21.43274 -21.17635 -19.07178 -18.75285 -18.41480 -18.11383 -17.75464 -17.18171 -16.89719 -16.48220 -16.44723 -16.06823 -15.69880 -15.54438 -15.23142 -15.04470 -14.78501 -14.52002 -14.44550 -14.26339 -13.92620 -13.73587 -13.41973 -12.78291 -12.72480 -12.61087 -12.50015 -12.47717 -12.26206 -11.82679 -11.77893 -11.65421 -11.59030 -11.25695 -11.00296 -10.75868 -10.47322 -10.33611 -10.10379 -9.76840 -9.59676 -8.11814 -6.22128 -0.08642 0.22646 1.10404 1.40393 1.43503 1.44605 1.46311 1.55285 1.91006 2.37959 2.46225 2.76371 3.21292 3.29311 3.54287 3.66214 3.80733 3.85142 3.92567 4.06160 4.12611 4.24857 4.31164 4.42727 4.58593 4.79213 4.89481 4.94706 5.02262 5.11805 5.18516 5.27124 5.34125 5.59382 5.66392 5.79893 5.86123 6.00720 6.06193 6.30581 6.31627 6.32382 6.49570 6.96760 7.02029 7.21285 7.45983 8.99490 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009055 B = 0.003061 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.364361 B = 9145.532302 C =11645.986830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.058 0.942 9 C 0.039 3.961 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.104 0.896 13 N -0.817 5.817 14 C 0.500 3.500 15 O -0.573 6.573 16 N -0.700 5.700 17 C 0.171 3.829 18 H 0.129 0.871 19 C 0.510 3.490 20 N -0.828 5.828 21 O -0.576 6.576 22 C -0.098 4.098 23 C -0.084 4.084 24 C -0.103 4.103 25 C -0.037 4.037 26 Cl -0.070 7.070 27 C -0.109 4.109 28 C -0.101 4.101 29 H 0.261 0.739 30 H -0.008 1.008 31 H 0.005 0.995 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.344 0.656 35 H 0.347 0.653 36 H 0.414 0.586 37 H 0.417 0.583 38 H 0.410 0.590 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.145 0.855 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.043 -22.170 -11.074 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.076 0.924 9 C 0.001 3.999 10 C -0.118 4.118 11 C -0.030 4.030 12 H 0.122 0.878 13 N -0.345 5.345 14 C 0.286 3.714 15 O -0.453 6.453 16 N -0.352 5.352 17 C 0.061 3.939 18 H 0.146 0.854 19 C 0.292 3.708 20 N -0.393 5.393 21 O -0.455 6.455 22 C -0.099 4.099 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.064 4.064 26 Cl -0.041 7.041 27 C -0.128 4.128 28 C -0.120 4.120 29 H 0.070 0.930 30 H 0.010 0.990 31 H 0.023 0.977 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.157 0.843 35 H 0.160 0.840 36 H 0.252 0.748 37 H 0.248 0.752 38 H 0.242 0.758 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 16.097 -21.594 -10.668 28.969 hybrid contribution 0.573 -0.018 -0.393 0.695 sum 16.670 -21.613 -11.061 29.451 Atomic orbital electron populations 1.70117 1.07692 1.27466 1.51837 1.25918 0.95682 1.03080 0.95044 0.85529 0.78659 0.78894 0.78440 1.19693 1.21088 1.18928 1.21732 0.93417 0.92603 1.50209 0.92395 1.18831 0.93912 0.91433 0.95695 1.21389 0.97670 0.91644 1.01080 1.21635 0.93650 0.92243 0.95496 0.87774 1.58985 1.27115 1.45187 1.03250 1.22345 0.81230 0.85092 0.82727 1.90621 1.61298 1.55179 1.38164 1.45799 1.45972 1.33059 1.10377 1.19676 0.90083 0.84861 0.99245 0.85355 1.21076 0.87817 0.87111 0.74771 1.43570 1.12178 1.08109 1.75425 1.90754 1.15802 1.87712 1.51251 1.19559 0.94707 1.02538 0.93070 1.21251 0.91125 0.98266 0.99571 1.21323 1.01829 0.98508 0.90474 1.21224 0.92273 1.03154 0.89720 1.98393 1.70033 1.95574 1.40080 1.21184 0.91992 0.99856 0.99774 1.21046 1.00643 0.98305 0.92011 0.92990 0.98951 0.97653 0.93430 0.91207 0.84253 0.83959 0.74814 0.75156 0.75754 0.81475 0.82242 0.83684 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.54 -30.68 9.11 25.60 0.23 -30.44 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 9 C 0.04 2.01 4.86 29.85 0.15 2.16 16 10 C -0.08 -3.19 4.78 30.59 0.15 -3.04 16 11 C 0.09 2.95 3.15 44.17 0.14 3.09 16 12 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 13 N -0.82 -28.97 8.44 -171.81 -1.45 -30.42 16 14 C 0.50 15.74 6.90 87.65 0.60 16.34 16 15 O -0.57 -20.59 15.91 -3.04 -0.05 -20.64 16 16 N -0.70 -17.12 4.56 -449.71 -2.05 -19.17 16 17 C 0.17 3.26 2.58 43.50 0.11 3.37 16 18 H 0.13 2.36 7.44 -2.39 -0.02 2.35 16 19 C 0.51 10.89 7.44 87.65 0.65 11.55 16 20 N -0.83 -9.60 8.77 -173.54 -1.52 -11.12 16 21 O -0.58 -18.12 17.16 -3.02 -0.05 -18.17 16 22 C -0.10 -1.37 4.74 -19.86 -0.09 -1.47 16 23 C -0.08 -0.77 9.51 22.27 0.21 -0.56 16 24 C -0.10 -1.01 9.83 22.29 0.22 -0.79 16 25 C -0.04 -0.49 6.32 22.32 0.14 -0.35 16 26 Cl -0.07 -0.96 28.96 -2.72 -0.08 -1.04 16 27 C -0.11 -1.55 9.83 22.29 0.22 -1.34 16 28 C -0.10 -1.54 9.05 22.27 0.20 -1.34 16 29 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 32 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 33 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.34 11.04 9.06 -89.69 -0.81 10.22 16 35 H 0.35 12.26 8.58 -89.69 -0.77 11.49 16 36 H 0.41 8.96 6.87 -92.70 -0.64 8.33 16 37 H 0.42 1.99 8.55 -92.71 -0.79 1.20 16 38 H 0.41 4.07 8.93 -92.71 -0.83 3.24 16 39 H 0.17 0.52 8.04 -2.91 -0.02 0.50 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 41 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 42 H 0.13 2.01 6.92 -2.91 -0.02 1.99 16 Total: -1.00 -78.64 378.37 -2.21 -80.85 By element: Atomic # 1 Polarization: 35.15 SS G_CDS: -2.72 Total: 32.44 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 3.39 Total: -2.33 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -4.74 Total: -117.56 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.10 Total: -38.80 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -78.64 -2.21 -80.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421479.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.993 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds