Wall clock time and date at job start Tue Mar 31 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47130 * 269.99845 * 3 2 1 5 5 H 1.48494 * 109.47259 * 30.00452 * 3 2 1 6 6 H 1.48508 * 109.46896 * 150.00297 * 3 2 1 7 7 C 1.37878 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46805 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47063 * 54.99775 * 11 10 9 13 13 N 1.46898 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50697 * 109.46923 * 175.00189 * 11 10 9 15 15 O 1.21279 * 120.00434 * 99.99655 * 14 11 10 16 16 N 1.34780 * 119.99840 * 279.99647 * 14 11 10 17 17 C 1.46493 * 120.00068 * 180.02562 * 16 14 11 18 18 H 1.08995 * 109.47414 * 35.00200 * 17 16 14 19 19 C 1.50704 * 109.47282 * 274.99750 * 17 16 14 20 20 N 1.34778 * 119.99997 * 179.97438 * 19 17 16 21 21 O 1.21278 * 119.99931 * 0.02562 * 19 17 16 22 22 C 1.50706 * 109.47221 * 154.99939 * 17 16 14 23 23 C 1.38244 * 119.98773 * 220.00020 * 22 17 16 24 24 C 1.38217 * 120.01084 * 180.02562 * 23 22 17 25 25 C 1.38351 * 119.98541 * 0.25893 * 24 23 22 26 26 Cl 1.73604 * 120.00786 * 179.69323 * 25 24 23 27 27 C 1.38348 * 119.97455 * 359.46866 * 25 24 23 28 28 C 1.38212 * 119.98576 * 0.54994 * 27 25 24 29 29 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46890 * 60.00133 * 9 7 2 31 31 H 1.08997 * 109.46751 * 300.00387 * 9 7 2 32 32 H 1.08997 * 109.47697 * 60.00106 * 10 9 7 33 33 H 1.08997 * 109.47340 * 299.99505 * 10 9 7 34 34 H 1.00905 * 110.99669 * 176.04614 * 13 11 10 35 35 H 1.00899 * 111.00573 * 299.99637 * 13 11 10 36 36 H 0.96999 * 119.99839 * 0.02562 * 16 14 11 37 37 H 0.96995 * 120.00189 * 359.97438 * 20 19 17 38 38 H 0.96993 * 119.99716 * 179.97438 * 20 19 17 39 39 H 1.07999 * 119.99331 * 0.02562 * 23 22 17 40 40 H 1.08002 * 120.00169 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.00586 * 180.25470 * 27 25 24 42 42 H 1.08000 * 119.99226 * 179.72624 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4799 -4.9872 -0.0012 12 1 0.7881 -5.0068 -0.8432 13 7 0.7279 -5.1188 1.2538 14 6 2.4545 -6.1299 -0.1250 15 8 2.7861 -6.7537 0.8608 16 7 2.9578 -6.4586 -1.3313 17 6 3.9048 -7.5698 -1.4518 18 1 3.6425 -8.3499 -0.7371 19 6 5.2992 -7.0748 -1.1658 20 7 6.3411 -7.9282 -1.2176 21 8 5.4836 -5.9087 -0.8883 22 6 3.8473 -8.1295 -2.8498 23 6 3.9127 -9.4958 -3.0504 24 6 3.8606 -10.0096 -4.3324 25 6 3.7483 -9.1560 -5.4154 26 17 3.6908 -9.8003 -7.0264 27 6 3.6772 -7.7892 -5.2137 28 6 3.7298 -7.2765 -3.9313 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5570 0.8896 32 1 2.8717 -3.6045 0.8894 33 1 2.8717 -3.6045 -0.8905 34 1 0.1634 -5.9552 1.2510 35 1 1.3474 -5.1034 2.0500 36 1 2.6929 -5.9595 -2.1197 37 1 6.1934 -8.8610 -1.4385 38 1 7.2386 -7.6094 -1.0339 39 1 4.0046 -10.1618 -2.2051 40 1 3.9121 -11.0770 -4.4889 41 1 3.5854 -7.1226 -6.0586 42 1 3.6788 -6.2092 -3.7740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122421480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:52 Heat of formation + Delta-G solvation = -65.982065 kcal Electronic energy + Delta-G solvation = -26625.353073 eV Core-core repulsion = 22630.458160 eV Total energy + Delta-G solvation = -3994.894913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98521 -39.48320 -38.92542 -37.00413 -35.33091 -34.88347 -33.94954 -32.75289 -31.72609 -31.41642 -30.04224 -27.78733 -25.99441 -23.77530 -23.30345 -22.67768 -20.98207 -20.36364 -19.83640 -18.11313 -17.92595 -17.31401 -16.95013 -16.27896 -16.03633 -15.93064 -15.41468 -15.21755 -14.78420 -14.48582 -14.39940 -14.13817 -14.03537 -13.99178 -13.78833 -13.36078 -13.02953 -12.27566 -12.12622 -12.05089 -11.96779 -11.87128 -11.50389 -11.31245 -10.84573 -10.64172 -10.55142 -10.50032 -10.16530 -9.91652 -9.73851 -9.61733 -9.34916 -9.31610 -9.04980 -8.93888 -8.33654 -8.17632 -5.88810 -3.90156 0.46955 0.71634 1.62795 2.39091 2.59988 2.90258 3.06013 3.38770 3.44833 3.49518 3.54966 4.00450 4.19137 4.32613 4.55102 4.64397 4.68501 4.73904 4.84730 4.98254 5.08822 5.19042 5.36549 5.46762 5.54607 5.57711 5.67330 5.82961 5.88085 6.16218 6.18045 6.53465 6.54225 6.76442 7.03219 7.15952 7.31634 7.52910 7.80447 7.83034 8.01834 8.02767 8.18356 8.23413 8.55128 9.17936 9.72712 11.22184 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.002563 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.597693 B =10921.832582 C =11706.817380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.082 3.918 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.494 3.506 15 O -0.550 6.550 16 N -0.709 5.709 17 C 0.169 3.831 18 H 0.122 0.878 19 C 0.508 3.492 20 N -0.853 5.853 21 O -0.513 6.513 22 C -0.091 4.091 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.030 4.030 26 Cl -0.067 7.067 27 C -0.101 4.101 28 C -0.092 4.092 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.333 0.667 35 H 0.348 0.652 36 H 0.407 0.593 37 H 0.398 0.602 38 H 0.403 0.597 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.962 -26.052 -11.531 29.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.034 4.034 12 H 0.117 0.883 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.363 5.363 17 C 0.059 3.941 18 H 0.140 0.860 19 C 0.289 3.711 20 N -0.418 5.418 21 O -0.386 6.386 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.057 4.057 26 Cl -0.038 7.038 27 C -0.120 4.120 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.244 0.756 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.575 -24.904 -10.962 28.528 hybrid contribution 1.339 -0.198 -0.529 1.453 sum 9.913 -25.102 -11.491 29.333 Atomic orbital electron populations 1.69976 1.05924 1.26330 1.51123 1.24984 0.94799 0.99013 0.95564 0.86655 0.79936 0.83788 0.77976 1.20797 1.21305 1.19961 1.21303 0.92988 0.91301 1.50212 0.92931 1.19019 0.93526 0.89880 0.98113 1.21650 0.98680 0.91749 1.01110 1.21850 0.93312 0.93146 0.95119 0.88325 1.59004 1.26867 1.44176 1.03270 1.22870 0.81715 0.85331 0.82015 1.90634 1.61352 1.53872 1.36832 1.45928 1.44917 1.34114 1.11314 1.19570 0.88099 0.91573 0.94873 0.86012 1.20900 0.87137 0.86438 0.76582 1.43770 1.10222 1.13152 1.74702 1.90839 1.84958 1.17011 1.45782 1.19717 1.01839 0.94047 0.93565 1.20966 0.99372 0.93921 0.97065 1.21042 1.00263 1.00157 0.90963 1.21042 1.04323 0.93858 0.86428 1.98393 1.96731 1.86603 1.22072 1.21107 0.99515 0.93353 0.97985 1.21045 0.98085 1.00595 0.91301 0.93171 0.96912 0.94714 0.92777 0.92589 0.85504 0.83740 0.75627 0.77377 0.76582 0.84432 0.84392 0.84230 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 10 C -0.09 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.08 1.39 3.15 -68.86 -0.22 1.18 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.68 8.44 -5.65 -0.05 -13.73 16 14 C 0.49 7.85 6.90 -10.99 -0.08 7.78 16 15 O -0.55 -10.00 15.91 5.56 0.09 -9.91 16 16 N -0.71 -8.92 4.56 -56.07 -0.26 -9.17 16 17 C 0.17 1.74 2.58 -70.23 -0.18 1.56 16 18 H 0.12 1.20 7.44 -51.93 -0.39 0.82 16 19 C 0.51 6.19 7.44 -10.98 -0.08 6.11 16 20 N -0.85 -6.50 8.77 31.22 0.27 -6.22 16 21 O -0.51 -8.99 17.16 5.56 0.10 -8.89 16 22 C -0.09 -0.69 4.74 -104.62 -0.50 -1.19 16 23 C -0.09 -0.53 9.51 -39.59 -0.38 -0.91 16 24 C -0.11 -0.61 9.83 -39.55 -0.39 -1.00 16 25 C -0.03 -0.21 6.32 -39.50 -0.25 -0.46 16 26 Cl -0.07 -0.47 28.96 -51.86 -1.50 -1.98 16 27 C -0.10 -0.74 9.83 -39.55 -0.39 -1.13 16 28 C -0.09 -0.73 9.05 -39.59 -0.36 -1.09 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.33 4.80 9.06 -39.29 -0.36 4.44 16 35 H 0.35 6.08 8.58 -39.29 -0.34 5.75 16 36 H 0.41 4.50 6.87 -40.82 -0.28 4.22 16 37 H 0.40 1.73 8.56 -40.82 -0.35 1.38 16 38 H 0.40 2.80 8.93 -40.82 -0.36 2.43 16 39 H 0.14 0.43 8.04 -52.49 -0.42 0.01 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 42 H 0.14 1.10 6.92 -52.49 -0.36 0.74 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -37.11 378.38 -8.76 -45.86 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.34 Total: 12.10 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -3.49 Total: -4.40 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.71 Total: -55.73 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.11 -8.76 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.120 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds