Wall clock time and date at job start Tue Mar 31 2020 22:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47130 * 269.99845 * 3 2 1 5 5 H 1.48494 * 109.47259 * 30.00452 * 3 2 1 6 6 H 1.48508 * 109.46896 * 150.00297 * 3 2 1 7 7 C 1.37878 * 119.99702 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00170 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99959 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46838 * 180.02562 * 9 7 2 11 11 C 1.53009 * 109.46805 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47063 * 54.99775 * 11 10 9 13 13 N 1.46898 * 109.46631 * 294.99589 * 11 10 9 14 14 C 1.50697 * 109.46923 * 175.00189 * 11 10 9 15 15 O 1.21279 * 120.00434 * 99.99655 * 14 11 10 16 16 N 1.34780 * 119.99840 * 279.99647 * 14 11 10 17 17 C 1.46493 * 120.00068 * 180.02562 * 16 14 11 18 18 H 1.08995 * 109.47414 * 35.00200 * 17 16 14 19 19 C 1.50704 * 109.47282 * 274.99750 * 17 16 14 20 20 N 1.34778 * 119.99997 * 179.97438 * 19 17 16 21 21 O 1.21278 * 119.99931 * 0.02562 * 19 17 16 22 22 C 1.50706 * 109.47221 * 154.99939 * 17 16 14 23 23 C 1.38244 * 119.98773 * 220.00020 * 22 17 16 24 24 C 1.38217 * 120.01084 * 180.02562 * 23 22 17 25 25 C 1.38351 * 119.98541 * 0.25893 * 24 23 22 26 26 Cl 1.73604 * 120.00786 * 179.69323 * 25 24 23 27 27 C 1.38348 * 119.97455 * 359.46866 * 25 24 23 28 28 C 1.38212 * 119.98576 * 0.54994 * 27 25 24 29 29 H 0.97003 * 120.00110 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46890 * 60.00133 * 9 7 2 31 31 H 1.08997 * 109.46751 * 300.00387 * 9 7 2 32 32 H 1.08997 * 109.47697 * 60.00106 * 10 9 7 33 33 H 1.08997 * 109.47340 * 299.99505 * 10 9 7 34 34 H 1.00905 * 110.99669 * 176.04614 * 13 11 10 35 35 H 1.00899 * 111.00573 * 299.99637 * 13 11 10 36 36 H 0.96999 * 119.99839 * 0.02562 * 16 14 11 37 37 H 0.96995 * 120.00189 * 359.97438 * 20 19 17 38 38 H 0.96993 * 119.99716 * 179.97438 * 20 19 17 39 39 H 1.07999 * 119.99331 * 0.02562 * 23 22 17 40 40 H 1.08002 * 120.00169 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.00586 * 180.25470 * 27 25 24 42 42 H 1.08000 * 119.99226 * 179.72624 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4799 -4.9872 -0.0012 12 1 0.7881 -5.0068 -0.8432 13 7 0.7279 -5.1188 1.2538 14 6 2.4545 -6.1299 -0.1250 15 8 2.7861 -6.7537 0.8608 16 7 2.9578 -6.4586 -1.3313 17 6 3.9048 -7.5698 -1.4518 18 1 3.6425 -8.3499 -0.7371 19 6 5.2992 -7.0748 -1.1658 20 7 6.3411 -7.9282 -1.2176 21 8 5.4836 -5.9087 -0.8883 22 6 3.8473 -8.1295 -2.8498 23 6 3.9127 -9.4958 -3.0504 24 6 3.8606 -10.0096 -4.3324 25 6 3.7483 -9.1560 -5.4154 26 17 3.6908 -9.8003 -7.0264 27 6 3.6772 -7.7892 -5.2137 28 6 3.7298 -7.2765 -3.9313 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6245 -2.5570 0.8896 32 1 2.8717 -3.6045 0.8894 33 1 2.8717 -3.6045 -0.8905 34 1 0.1634 -5.9552 1.2510 35 1 1.3474 -5.1034 2.0500 36 1 2.6929 -5.9595 -2.1197 37 1 6.1934 -8.8610 -1.4385 38 1 7.2386 -7.6094 -1.0339 39 1 4.0046 -10.1618 -2.2051 40 1 3.9121 -11.0770 -4.4889 41 1 3.5854 -7.1226 -6.0586 42 1 3.6788 -6.2092 -3.7740 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122421480.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:52 Heat of formation + Delta-G solvation = -95.794485 kcal Electronic energy + Delta-G solvation = -26626.645836 eV Core-core repulsion = 22630.458160 eV Total energy + Delta-G solvation = -3996.187676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90199 -40.43434 -39.85030 -37.57853 -36.85214 -35.96343 -34.84630 -34.80046 -32.34609 -32.07960 -31.91293 -28.82423 -27.60661 -25.31708 -24.03822 -23.34170 -22.49530 -21.45216 -21.15685 -19.08557 -18.73147 -18.40754 -18.21792 -17.67279 -17.18315 -16.90439 -16.49690 -16.46361 -16.04321 -15.64863 -15.50423 -15.36984 -15.03554 -14.76443 -14.52126 -14.44796 -14.28699 -13.84187 -13.80803 -13.42907 -12.80570 -12.72249 -12.60978 -12.52959 -12.47775 -12.28101 -11.82636 -11.79237 -11.67674 -11.58016 -11.27313 -11.02142 -10.74963 -10.49430 -10.33489 -10.10825 -9.76547 -9.59333 -8.14357 -6.24158 -0.09041 0.22254 1.10230 1.37372 1.40752 1.41708 1.47808 1.52978 1.95943 2.37220 2.44234 2.76064 3.18170 3.29113 3.55866 3.65866 3.80955 3.85264 3.93584 4.05319 4.09925 4.24696 4.31423 4.42398 4.58664 4.77852 4.89691 4.94489 5.02452 5.11632 5.18455 5.24342 5.34687 5.56706 5.66196 5.80940 5.84428 5.98286 6.06291 6.31114 6.31390 6.32863 6.54210 6.93465 7.02006 7.24104 7.43453 8.96796 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.002563 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.597693 B =10921.832582 C =11706.817380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.049 0.951 9 C 0.042 3.958 10 C -0.078 4.078 11 C 0.087 3.913 12 H 0.115 0.885 13 N -0.816 5.816 14 C 0.499 3.501 15 O -0.573 6.573 16 N -0.700 5.700 17 C 0.172 3.828 18 H 0.133 0.867 19 C 0.503 3.497 20 N -0.829 5.829 21 O -0.576 6.576 22 C -0.096 4.096 23 C -0.082 4.082 24 C -0.101 4.101 25 C -0.036 4.036 26 Cl -0.069 7.069 27 C -0.109 4.109 28 C -0.103 4.103 29 H 0.263 0.737 30 H -0.003 1.003 31 H 0.008 0.992 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.349 0.651 35 H 0.345 0.655 36 H 0.414 0.586 37 H 0.417 0.583 38 H 0.409 0.591 39 H 0.169 0.831 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.887 -27.893 -12.411 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.067 0.933 9 C 0.005 3.995 10 C -0.117 4.117 11 C -0.028 4.028 12 H 0.133 0.867 13 N -0.345 5.345 14 C 0.285 3.715 15 O -0.452 6.452 16 N -0.352 5.352 17 C 0.063 3.937 18 H 0.151 0.849 19 C 0.286 3.714 20 N -0.394 5.394 21 O -0.454 6.454 22 C -0.097 4.097 23 C -0.100 4.100 24 C -0.120 4.120 25 C -0.063 4.063 26 Cl -0.040 7.040 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.016 0.984 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.249 0.751 38 H 0.241 0.759 39 H 0.187 0.813 40 H 0.179 0.821 41 H 0.162 0.838 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.524 -26.824 -11.893 30.849 hybrid contribution 1.071 0.283 -0.318 1.152 sum 10.595 -26.541 -12.211 31.077 Atomic orbital electron populations 1.70093 1.07464 1.27534 1.51668 1.25863 0.95740 1.02863 0.94930 0.85559 0.78558 0.79047 0.78539 1.19539 1.20548 1.19519 1.21709 0.93135 0.92968 1.50512 0.93269 1.18815 0.93719 0.91051 0.95941 1.21331 0.97534 0.92530 1.00271 1.21615 0.93632 0.91694 0.95895 0.86723 1.58959 1.27096 1.45408 1.03023 1.22374 0.81535 0.84922 0.82673 1.90618 1.62118 1.54724 1.37765 1.45809 1.44474 1.34479 1.10442 1.19691 0.86463 0.90684 0.96866 0.84943 1.21248 0.88502 0.85953 0.75738 1.43576 1.09609 1.13653 1.72571 1.90817 1.85955 1.19614 1.49058 1.19540 1.03476 0.94975 0.91705 1.21247 0.97533 0.93144 0.98087 1.21326 0.99073 1.01174 0.90414 1.21218 1.04337 0.93969 0.86787 1.98395 1.96732 1.86524 1.22388 1.21167 0.99858 0.93864 0.97882 1.21040 0.98848 1.00432 0.91834 0.92837 0.98429 0.97326 0.94680 0.92299 0.83727 0.84179 0.74850 0.75127 0.75918 0.81316 0.82109 0.83805 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.24 5.46 84.65 0.46 0.70 16 3 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.26 4.86 29.85 0.15 2.41 16 10 C -0.08 -3.42 4.78 30.60 0.15 -3.27 16 11 C 0.09 3.01 3.15 44.17 0.14 3.15 16 12 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 13 N -0.82 -27.98 8.44 -171.80 -1.45 -29.43 16 14 C 0.50 15.72 6.90 87.66 0.60 16.32 16 15 O -0.57 -20.59 15.91 -3.03 -0.05 -20.64 16 16 N -0.70 -17.17 4.56 -449.69 -2.05 -19.22 16 17 C 0.17 3.29 2.58 43.50 0.11 3.40 16 18 H 0.13 2.29 7.44 -2.39 -0.02 2.28 16 19 C 0.50 11.80 7.44 87.66 0.65 12.45 16 20 N -0.83 -11.03 8.77 -173.53 -1.52 -12.55 16 21 O -0.58 -20.45 17.16 -3.02 -0.05 -20.50 16 22 C -0.10 -1.27 4.74 -19.86 -0.09 -1.37 16 23 C -0.08 -0.63 9.51 22.27 0.21 -0.42 16 24 C -0.10 -0.84 9.83 22.29 0.22 -0.62 16 25 C -0.04 -0.44 6.32 22.32 0.14 -0.30 16 26 Cl -0.07 -0.87 28.96 -2.72 -0.08 -0.95 16 27 C -0.11 -1.46 9.83 22.29 0.22 -1.25 16 28 C -0.10 -1.53 9.05 22.26 0.20 -1.33 16 29 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.01 0.49 7.75 -2.39 -0.02 0.47 16 32 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.35 9.92 9.06 -89.69 -0.81 9.11 16 35 H 0.34 12.28 8.58 -89.69 -0.77 11.51 16 36 H 0.41 9.01 6.87 -92.71 -0.64 8.38 16 37 H 0.42 2.34 8.56 -92.71 -0.79 1.55 16 38 H 0.41 5.01 8.93 -92.71 -0.83 4.18 16 39 H 0.17 0.24 8.04 -2.91 -0.02 0.21 16 40 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 41 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 42 H 0.13 2.08 6.92 -2.91 -0.02 2.06 16 Total: -1.00 -81.70 378.38 -2.21 -83.91 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -2.72 Total: 30.85 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 3.39 Total: -2.24 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -4.74 Total: -118.40 kcal Atomic # 8 Polarization: -41.04 SS G_CDS: -0.10 Total: -41.14 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -81.70 -2.21 -83.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421480.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.883 kcal (2) G-P(sol) polarization free energy of solvation -81.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds