Wall clock time and date at job start Tue Mar 31 2020 22:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00095 * 2 1 4 4 H 1.48494 * 109.47554 * 270.00543 * 3 2 1 5 5 H 1.48507 * 109.47170 * 30.00370 * 3 2 1 6 6 H 1.48497 * 109.47330 * 149.99802 * 3 2 1 7 7 C 1.37880 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00028 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99931 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47126 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.46633 * 304.99498 * 11 10 9 13 13 N 1.46892 * 109.47290 * 64.99528 * 11 10 9 14 14 C 1.50692 * 109.47154 * 184.99990 * 11 10 9 15 15 O 1.21284 * 119.99844 * 259.99586 * 14 11 10 16 16 N 1.34776 * 120.00367 * 79.99833 * 14 11 10 17 17 C 1.46503 * 120.00385 * 180.02562 * 16 14 11 18 18 H 1.08999 * 109.47006 * 324.99628 * 17 16 14 19 19 C 1.50693 * 109.47230 * 84.99739 * 17 16 14 20 20 N 1.34776 * 120.00120 * 179.97438 * 19 17 16 21 21 O 1.21278 * 119.99949 * 0.02562 * 19 17 16 22 22 C 1.50696 * 109.46990 * 205.00111 * 17 16 14 23 23 C 1.38247 * 119.98658 * 140.00167 * 22 17 16 24 24 C 1.38216 * 120.01497 * 179.97438 * 23 22 17 25 25 C 1.38357 * 119.98603 * 0.02562 * 24 23 22 26 26 Cl 1.73599 * 120.01134 * 180.02562 * 25 24 23 27 27 C 1.38347 * 119.97107 * 0.28224 * 25 24 23 28 28 C 1.38219 * 119.98930 * 359.40143 * 27 25 24 29 29 H 0.96999 * 119.99552 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47382 * 59.99834 * 9 7 2 31 31 H 1.09007 * 109.46841 * 299.99526 * 9 7 2 32 32 H 1.09002 * 109.47390 * 60.00023 * 10 9 7 33 33 H 1.08999 * 109.47098 * 299.99482 * 10 9 7 34 34 H 1.00905 * 110.99876 * 60.00356 * 13 11 10 35 35 H 1.00900 * 111.00433 * 183.95573 * 13 11 10 36 36 H 0.97009 * 119.99797 * 0.02562 * 16 14 11 37 37 H 0.96999 * 120.00168 * 0.02562 * 20 19 17 38 38 H 0.96999 * 120.00369 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.99321 * 359.97438 * 23 22 17 40 40 H 1.08002 * 120.00776 * 180.02562 * 24 23 22 41 41 H 1.08000 * 120.00661 * 179.71600 * 27 25 24 42 42 H 1.07997 * 119.99445 * 180.32231 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 1 0.7879 -5.0071 0.8396 13 7 0.7291 -5.1183 -1.2574 14 6 2.4549 -6.1298 0.1221 15 8 2.7871 -6.7532 -0.8638 16 7 2.9573 -6.4591 1.3285 17 6 3.9052 -7.5696 1.4491 18 1 3.6442 -8.3494 0.7336 19 6 5.2993 -7.0732 1.1647 20 7 6.3420 -7.9255 1.2178 21 8 5.4832 -5.9066 0.8890 22 6 3.8469 -8.1303 2.8466 23 6 3.9132 -9.4967 3.0462 24 6 3.8603 -10.0116 4.3278 25 6 3.7403 -9.1593 5.4111 26 17 3.6744 -9.8052 7.0210 27 6 3.6675 -7.7924 5.2102 28 6 3.7271 -7.2783 3.9286 29 1 -0.4849 0.8401 0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.8714 -3.6047 0.8890 33 1 2.8726 -3.6039 -0.8910 34 1 1.3493 -5.1025 -2.0533 35 1 0.1647 -5.9547 -1.2555 36 1 2.6913 -5.9607 2.1172 37 1 6.1951 -8.8585 1.4387 38 1 7.2394 -7.6061 1.0344 39 1 4.0065 -10.1620 2.2005 40 1 3.9126 -11.0790 4.4836 41 1 3.5692 -7.1268 6.0551 42 1 3.6755 -6.2109 3.7721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122421481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:55 Heat of formation + Delta-G solvation = -65.997903 kcal Electronic energy + Delta-G solvation = -26625.870624 eV Core-core repulsion = 22630.975024 eV Total energy + Delta-G solvation = -3994.895599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98490 -39.48226 -38.92515 -37.00416 -35.33082 -34.88257 -33.94905 -32.75268 -31.72562 -31.41586 -30.04219 -27.78754 -25.99484 -23.77503 -23.30315 -22.67744 -20.98190 -20.36282 -19.83605 -18.11291 -17.92540 -17.31363 -16.95014 -16.27886 -16.03566 -15.93068 -15.41475 -15.21769 -14.78310 -14.48538 -14.39920 -14.13872 -14.03519 -13.99043 -13.78831 -13.36088 -13.02889 -12.27430 -12.12540 -12.05169 -11.96864 -11.87094 -11.50231 -11.31209 -10.84921 -10.64419 -10.54936 -10.49433 -10.16818 -9.91608 -9.73642 -9.61680 -9.34858 -9.31484 -9.04947 -8.94241 -8.33649 -8.17496 -5.88827 -3.90160 0.46970 0.71651 1.62841 2.39131 2.59974 2.90270 3.06054 3.39193 3.44981 3.49053 3.54926 4.00510 4.19180 4.32654 4.55097 4.64442 4.68508 4.73934 4.84748 4.98260 5.08862 5.19043 5.36585 5.46743 5.54577 5.57727 5.67355 5.82983 5.88128 6.16240 6.18020 6.53483 6.54288 6.76378 7.03253 7.15967 7.31642 7.52914 7.80427 7.83028 8.01741 8.02777 8.18397 8.23407 8.55150 9.17930 9.72710 11.22164 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.002563 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.161343 B =10920.179183 C =11704.032542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.082 3.918 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.494 3.506 15 O -0.550 6.550 16 N -0.709 5.709 17 C 0.169 3.831 18 H 0.122 0.878 19 C 0.508 3.492 20 N -0.853 5.853 21 O -0.513 6.513 22 C -0.091 4.091 23 C -0.095 4.095 24 C -0.106 4.106 25 C -0.030 4.030 26 Cl -0.067 7.067 27 C -0.101 4.101 28 C -0.092 4.092 29 H 0.259 0.741 30 H 0.034 0.966 31 H 0.013 0.987 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.348 0.652 35 H 0.333 0.667 36 H 0.407 0.593 37 H 0.398 0.602 38 H 0.403 0.597 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.955 -26.057 11.528 29.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.071 0.929 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.034 4.034 12 H 0.117 0.883 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.363 5.363 17 C 0.059 3.941 18 H 0.140 0.860 19 C 0.289 3.711 20 N -0.418 5.418 21 O -0.386 6.386 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.057 4.057 26 Cl -0.038 7.038 27 C -0.120 4.120 28 C -0.110 4.110 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.163 0.837 35 H 0.145 0.855 36 H 0.244 0.756 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.158 0.842 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.566 -24.908 10.970 28.533 hybrid contribution 1.338 -0.199 0.505 1.444 sum 9.904 -25.107 11.476 29.328 Atomic orbital electron populations 1.69978 1.05924 1.26325 1.51127 1.24986 0.94799 0.99013 0.95561 0.86656 0.79867 0.83767 0.78065 1.20749 1.21334 1.19976 1.21302 0.92987 0.91302 1.50214 0.92931 1.19018 0.93523 0.89880 0.98109 1.21651 0.98684 0.91749 1.01109 1.21847 0.93321 0.93146 0.95111 0.88327 1.59002 1.26873 1.44176 1.03266 1.22869 0.81719 0.85326 0.82018 1.90635 1.61334 1.53895 1.36837 1.45931 1.44873 1.34176 1.11290 1.19568 0.88089 0.91574 0.94886 0.86011 1.20895 0.87135 0.86451 0.76573 1.43772 1.10200 1.13174 1.74700 1.90839 1.84986 1.16958 1.45808 1.19716 1.01842 0.94045 0.93563 1.20967 0.99377 0.93913 0.97068 1.21044 1.00260 1.00161 0.90962 1.21042 1.04306 0.93854 0.86448 1.98392 1.96701 1.86538 1.22163 1.21108 0.99514 0.93344 0.97995 1.21048 0.98079 1.00596 0.91301 0.93172 0.94720 0.96912 0.92581 0.92784 0.83742 0.85502 0.75625 0.77377 0.76580 0.84432 0.84392 0.84231 0.84421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.83 4.86 -27.88 -0.14 0.70 16 10 C -0.09 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.08 1.40 3.15 -68.87 -0.22 1.18 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.68 8.44 -5.66 -0.05 -13.73 16 14 C 0.49 7.86 6.90 -10.99 -0.08 7.78 16 15 O -0.55 -10.00 15.91 5.55 0.09 -9.91 16 16 N -0.71 -8.92 4.56 -56.07 -0.26 -9.18 16 17 C 0.17 1.74 2.58 -70.24 -0.18 1.56 16 18 H 0.12 1.20 7.44 -51.93 -0.39 0.82 16 19 C 0.51 6.19 7.44 -10.99 -0.08 6.11 16 20 N -0.85 -6.50 8.77 31.22 0.27 -6.22 16 21 O -0.51 -8.99 17.16 5.56 0.10 -8.90 16 22 C -0.09 -0.69 4.74 -104.62 -0.50 -1.19 16 23 C -0.09 -0.53 9.51 -39.59 -0.38 -0.91 16 24 C -0.11 -0.61 9.83 -39.55 -0.39 -1.00 16 25 C -0.03 -0.21 6.32 -39.50 -0.25 -0.46 16 26 Cl -0.07 -0.47 28.96 -51.86 -1.50 -1.98 16 27 C -0.10 -0.74 9.83 -39.55 -0.39 -1.13 16 28 C -0.09 -0.73 9.05 -39.59 -0.36 -1.09 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.35 6.08 8.58 -39.29 -0.34 5.75 16 35 H 0.33 4.80 9.06 -39.29 -0.36 4.44 16 36 H 0.41 4.51 6.87 -40.82 -0.28 4.22 16 37 H 0.40 1.73 8.55 -40.82 -0.35 1.38 16 38 H 0.40 2.80 8.93 -40.82 -0.36 2.43 16 39 H 0.14 0.43 8.04 -52.48 -0.42 0.01 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.14 1.10 6.92 -52.49 -0.36 0.74 16 LS Contribution 378.37 15.07 5.70 5.70 Total: -1.00 -37.11 378.37 -8.76 -45.86 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -5.34 Total: 12.11 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -3.49 Total: -4.40 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.71 Total: -55.74 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.11 -8.76 -45.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122421481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.136 kcal (2) G-P(sol) polarization free energy of solvation -37.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds