Wall clock time and date at job start Tue Mar 31 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 120.00401 * 2 1 4 4 H 1.48500 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46789 * 299.99485 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99464 * 3 2 1 7 7 C 1.38655 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00156 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00351 * 185.05851 * 9 7 2 11 11 C 1.38901 * 120.06469 * 354.48975 * 10 9 7 12 12 C 1.38079 * 119.92939 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06937 * 359.74304 * 12 11 10 14 14 C 1.38277 * 120.13608 * 0.51153 * 13 12 11 15 15 C 1.50698 * 119.96416 * 179.76438 * 14 13 12 16 16 N 1.46502 * 109.47165 * 269.72467 * 15 14 13 17 17 C 1.34778 * 119.99842 * 180.02562 * 16 15 14 18 18 O 1.21559 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.47826 * 120.00038 * 179.97438 * 17 16 15 20 20 C 1.41581 * 120.36928 * 359.97438 * 19 17 16 21 21 C 1.34819 * 120.10644 * 180.02562 * 20 19 17 22 22 N 1.36053 * 120.83347 * 359.97438 * 21 20 19 23 23 N 1.40255 * 133.73177 * 179.97438 * 22 21 20 24 24 N 1.28974 * 107.01931 * 179.97438 * 23 22 21 25 25 N 1.28538 * 110.84335 * 0.02562 * 24 23 22 26 26 C 1.32620 * 110.18903 * 359.97438 * 25 24 23 27 27 C 1.38455 * 120.37450 * 180.21666 * 19 17 16 28 28 C 1.38121 * 120.07017 * 359.48957 * 14 13 12 29 29 H 0.97003 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.03312 * 359.95135 * 11 10 9 31 31 H 1.08004 * 119.96646 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.93318 * 180.27393 * 13 12 11 33 33 H 1.08999 * 109.47010 * 149.72513 * 15 14 13 34 34 H 1.09001 * 109.47087 * 29.72753 * 15 14 13 35 35 H 0.96999 * 120.00310 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.94689 * 359.97438 * 20 19 17 37 37 H 1.08008 * 119.58234 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.51783 * 359.77801 * 27 19 17 39 39 H 1.07998 * 120.03778 * 180.23075 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0958 12 6 4.2022 -4.5969 0.2056 13 6 3.5682 -5.8197 0.3326 14 6 2.1872 -5.8884 0.3395 15 6 1.5006 -7.2232 0.4727 16 7 1.2721 -7.7900 -0.8588 17 6 0.6669 -8.9874 -0.9867 18 8 0.3110 -9.5973 0.0028 19 6 0.4358 -9.5590 -2.3302 20 6 0.8467 -8.8551 -3.4879 21 6 0.6329 -9.3812 -4.7107 22 7 0.0234 -10.5892 -4.8533 23 7 -0.3275 -11.3733 -5.9620 24 7 -0.8908 -12.4404 -5.5065 25 7 -0.9372 -12.4205 -4.2222 26 6 -0.3888 -11.3044 -3.7616 27 6 -0.1892 -10.7864 -2.4708 28 6 1.4363 -4.7343 0.2301 29 1 -0.4850 0.8401 -0.0004 30 1 3.9527 -2.4846 0.0005 31 1 5.2810 -4.5470 0.1960 32 1 4.1531 -6.7231 0.4227 33 1 0.5450 -7.0912 0.9802 34 1 2.1295 -7.8990 1.0523 35 1 1.5558 -7.3031 -1.6483 36 1 1.3314 -7.8949 -3.3914 37 1 0.9501 -8.8372 -5.5881 38 1 -0.5113 -11.3407 -1.6016 39 1 0.3577 -4.7881 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001126045090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:46 Heat of formation + Delta-G solvation = 118.449377 kcal Electronic energy + Delta-G solvation = -26706.456276 eV Core-core repulsion = 22618.451417 eV Total energy + Delta-G solvation = -4088.004859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.83460 -40.53635 -39.29333 -38.58980 -36.98291 -34.94291 -34.46307 -32.76229 -32.43250 -31.03653 -30.90235 -29.30649 -26.93129 -25.55550 -25.24197 -24.71309 -23.30814 -21.87802 -21.45576 -21.02223 -19.24997 -18.66024 -17.94096 -17.48520 -17.32588 -16.95957 -16.16092 -15.70861 -15.59562 -15.25028 -15.12225 -14.69051 -14.50127 -14.13441 -13.89943 -13.74943 -13.68930 -13.48797 -12.93508 -12.89971 -12.60892 -12.46529 -12.40334 -11.97418 -11.78862 -11.52305 -11.50912 -11.08296 -10.96424 -10.84539 -10.68914 -10.56268 -10.49576 -9.53329 -9.38538 -9.14612 -9.00193 -8.41253 -7.46894 -6.59735 -4.19482 -0.45129 -0.10950 1.19630 1.60736 1.69275 2.06430 2.11994 2.67750 2.90913 3.02389 3.04394 3.09779 3.25815 3.56125 3.78428 3.83244 4.03061 4.31394 4.36287 4.41621 4.75134 4.77274 4.91817 4.95106 5.07862 5.11080 5.18419 5.37256 5.39284 5.56209 5.67116 5.72736 5.76719 5.93292 6.06393 6.11478 6.40234 6.66769 6.86387 7.01965 7.09885 7.15582 7.23622 7.56407 7.74283 7.84023 7.88598 8.85699 9.52573 10.57753 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002040 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.265597 B =13722.821675 C =14481.249681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.149 3.851 11 C -0.223 4.223 12 C -0.076 4.076 13 C -0.195 4.195 14 C -0.077 4.077 15 C 0.167 3.833 16 N -0.706 5.706 17 C 0.557 3.443 18 O -0.522 6.522 19 C -0.066 4.066 20 C -0.114 4.114 21 C 0.110 3.890 22 N -0.295 5.295 23 N -0.107 5.107 24 N -0.008 5.008 25 N -0.313 5.313 26 C 0.237 3.763 27 C -0.024 4.024 28 C -0.171 4.171 29 H 0.271 0.729 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.404 0.596 36 H 0.175 0.825 37 H 0.190 0.810 38 H 0.182 0.818 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.919 -14.252 -5.825 16.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.078 6.078 10 C 0.095 3.905 11 C -0.243 4.243 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.078 4.078 15 C 0.045 3.955 16 N -0.357 5.357 17 C 0.342 3.658 18 O -0.399 6.399 19 C -0.078 4.078 20 C -0.138 4.138 21 C -0.017 4.017 22 N -0.075 5.075 23 N -0.090 5.090 24 N -0.001 5.001 25 N -0.173 5.173 26 C -0.017 4.017 27 C -0.048 4.048 28 C -0.191 4.191 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.240 0.760 36 H 0.192 0.808 37 H 0.207 0.793 38 H 0.199 0.801 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.725 -15.524 -6.293 17.160 hybrid contribution 1.061 1.987 0.036 2.253 sum 4.787 -13.537 -6.256 15.662 Atomic orbital electron populations 1.70036 1.05995 1.27812 1.45464 1.25312 0.95863 0.98928 0.96350 0.85639 0.79126 0.80241 0.78387 1.19054 1.20060 1.20043 1.21375 0.91837 0.80676 1.53128 0.88916 1.83981 1.34338 1.11448 1.77994 1.19328 0.90266 0.88110 0.92765 1.21271 0.93852 0.99165 1.10006 1.20761 0.98650 0.92240 0.97732 1.20480 0.93268 0.97211 1.10522 1.19200 0.93490 0.92607 1.02519 1.20276 1.00688 0.91672 0.82848 1.46051 1.59471 1.19474 1.10732 1.17750 0.78885 0.81704 0.87446 1.90851 1.50444 1.60263 1.38343 1.20385 0.98148 0.94549 0.94710 1.21279 1.01109 1.01822 0.89543 1.21617 0.95660 0.83529 1.00906 1.49063 1.35710 1.15416 1.07348 1.82841 1.21616 1.00402 1.04160 1.77904 1.07294 1.11812 1.03066 1.75266 1.23155 1.16828 1.02081 1.22771 0.97442 0.90554 0.90935 1.20794 0.96026 0.94467 0.93500 1.20088 0.99454 0.89838 1.09702 0.91890 0.85411 0.87221 0.87417 0.90183 0.90274 0.75965 0.80820 0.79305 0.80079 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.82 13.67 55.48 0.76 -23.07 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 19.25 29.55 -169.99 -5.02 14.22 16 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.19 9.49 30.89 0.29 -9.90 16 8 H 0.09 2.21 5.20 -52.49 -0.27 1.93 16 9 O -0.17 -4.55 9.76 0.04 0.00 -4.55 16 10 C 0.15 3.17 6.65 -39.11 -0.26 2.91 16 11 C -0.22 -4.22 9.17 -39.39 -0.36 -4.58 16 12 C -0.08 -1.16 10.04 -39.61 -0.40 -1.56 16 13 C -0.20 -2.69 9.70 -39.53 -0.38 -3.07 16 14 C -0.08 -1.09 5.25 -104.65 -0.55 -1.64 16 15 C 0.17 1.91 5.80 -5.19 -0.03 1.88 16 16 N -0.71 -6.48 5.50 -62.44 -0.34 -6.82 16 17 C 0.56 5.46 7.78 -12.34 -0.10 5.37 16 18 O -0.52 -6.91 16.37 5.31 0.09 -6.82 16 19 C -0.07 -0.49 5.90 -104.62 -0.62 -1.11 16 20 C -0.11 -0.55 9.48 -39.52 -0.37 -0.92 16 21 C 0.11 0.60 11.18 -16.89 -0.19 0.41 16 22 N -0.29 -2.77 3.94 -12.43 -0.05 -2.81 16 23 N -0.11 -1.26 13.98 60.35 0.84 -0.41 16 24 N -0.01 -0.10 13.35 60.35 0.81 0.70 16 25 N -0.31 -3.95 12.27 31.03 0.38 -3.57 16 26 C 0.24 2.44 8.02 -156.36 -1.25 1.19 16 27 C -0.02 -0.20 9.70 -38.65 -0.37 -0.58 16 28 C -0.17 -3.02 9.65 -39.40 -0.38 -3.40 16 29 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.13 2.46 5.64 -52.49 -0.30 2.17 16 31 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.08 0.86 8.08 -51.93 -0.42 0.45 16 35 H 0.40 2.86 6.53 -40.82 -0.27 2.60 16 36 H 0.17 0.35 6.46 -52.49 -0.34 0.01 16 37 H 0.19 0.40 8.06 -52.48 -0.42 -0.03 16 38 H 0.18 1.41 7.67 -52.49 -0.40 1.01 16 39 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 351.23 15.07 5.29 5.29 Total: -1.00 -32.73 351.23 -5.56 -38.29 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -3.24 Total: 3.60 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -5.07 Total: -14.06 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 2.40 Total: -35.98 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.73 -5.56 -38.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126045090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.741 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds