Wall clock time and date at job start Tue Mar 31 2020 22:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86802 * 120.00401 * 2 1 4 4 H 1.48500 * 109.47404 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46789 * 299.99485 * 3 2 1 6 6 H 1.48500 * 109.47100 * 59.99464 * 3 2 1 7 7 C 1.38655 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00156 * 180.02562 * 7 2 1 9 9 O 1.34825 * 119.99955 * 0.02562 * 7 2 1 10 10 C 1.35756 * 117.00351 * 185.05851 * 9 7 2 11 11 C 1.38901 * 120.06469 * 354.48975 * 10 9 7 12 12 C 1.38079 * 119.92939 * 179.97438 * 11 10 9 13 13 C 1.38326 * 120.06937 * 359.74304 * 12 11 10 14 14 C 1.38277 * 120.13608 * 0.51153 * 13 12 11 15 15 C 1.50698 * 119.96416 * 179.76438 * 14 13 12 16 16 N 1.46502 * 109.47165 * 269.72467 * 15 14 13 17 17 C 1.34778 * 119.99842 * 180.02562 * 16 15 14 18 18 O 1.21559 * 119.99983 * 359.97438 * 17 16 15 19 19 C 1.47826 * 120.00038 * 179.97438 * 17 16 15 20 20 C 1.41581 * 120.36928 * 359.97438 * 19 17 16 21 21 C 1.34819 * 120.10644 * 180.02562 * 20 19 17 22 22 N 1.36053 * 120.83347 * 359.97438 * 21 20 19 23 23 N 1.40255 * 133.73177 * 179.97438 * 22 21 20 24 24 N 1.28974 * 107.01931 * 179.97438 * 23 22 21 25 25 N 1.28538 * 110.84335 * 0.02562 * 24 23 22 26 26 C 1.32620 * 110.18903 * 359.97438 * 25 24 23 27 27 C 1.38455 * 120.37450 * 180.21666 * 19 17 16 28 28 C 1.38121 * 120.07017 * 359.48957 * 14 13 12 29 29 H 0.97003 * 120.00083 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.03312 * 359.95135 * 11 10 9 31 31 H 1.08004 * 119.96646 * 179.97438 * 12 11 10 32 32 H 1.07997 * 119.93318 * 180.27393 * 13 12 11 33 33 H 1.08999 * 109.47010 * 149.72513 * 15 14 13 34 34 H 1.09001 * 109.47087 * 29.72753 * 15 14 13 35 35 H 0.96999 * 120.00310 * 359.97438 * 16 15 14 36 36 H 1.07995 * 119.94689 * 359.97438 * 20 19 17 37 37 H 1.08008 * 119.58234 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.51783 * 359.77801 * 27 19 17 39 39 H 1.07998 * 120.03778 * 180.23075 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8910 2.3963 -1.2126 6 1 1.8908 2.3965 1.2124 7 6 2.0088 -1.2008 0.0005 8 1 3.0887 -1.2009 0.0010 9 8 1.3346 -2.3684 0.0005 10 6 2.0697 -3.5046 0.1077 11 6 3.4572 -3.4395 0.0958 12 6 4.2022 -4.5969 0.2056 13 6 3.5682 -5.8197 0.3326 14 6 2.1872 -5.8884 0.3395 15 6 1.5006 -7.2232 0.4727 16 7 1.2721 -7.7900 -0.8588 17 6 0.6669 -8.9874 -0.9867 18 8 0.3110 -9.5973 0.0028 19 6 0.4358 -9.5590 -2.3302 20 6 0.8467 -8.8551 -3.4879 21 6 0.6329 -9.3812 -4.7107 22 7 0.0234 -10.5892 -4.8533 23 7 -0.3275 -11.3733 -5.9620 24 7 -0.8908 -12.4404 -5.5065 25 7 -0.9372 -12.4205 -4.2222 26 6 -0.3888 -11.3044 -3.7616 27 6 -0.1892 -10.7864 -2.4708 28 6 1.4363 -4.7343 0.2301 29 1 -0.4850 0.8401 -0.0004 30 1 3.9527 -2.4846 0.0005 31 1 5.2810 -4.5470 0.1960 32 1 4.1531 -6.7231 0.4227 33 1 0.5450 -7.0912 0.9802 34 1 2.1295 -7.8990 1.0523 35 1 1.5558 -7.3031 -1.6483 36 1 1.3314 -7.8949 -3.3914 37 1 0.9501 -8.8372 -5.5881 38 1 -0.5113 -11.3407 -1.6016 39 1 0.3577 -4.7881 0.2392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001126045090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:45 Heat of formation + Delta-G solvation = 95.703732 kcal Electronic energy + Delta-G solvation = -26707.442601 eV Core-core repulsion = 22618.451417 eV Total energy + Delta-G solvation = -4088.991184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.59332 -41.38459 -40.70592 -39.38616 -38.41790 -35.95974 -35.19846 -34.26866 -33.51581 -32.10389 -31.67689 -30.73187 -27.98339 -27.21981 -25.94634 -25.70015 -24.01059 -23.22305 -22.50633 -22.19219 -20.13902 -19.55375 -19.20311 -18.77463 -18.09512 -18.01797 -16.96345 -16.80316 -16.59442 -16.29499 -16.07692 -16.03484 -15.81521 -15.44565 -15.06556 -14.85774 -14.50478 -14.33237 -14.22378 -13.90537 -13.72093 -13.69711 -13.34615 -13.11433 -13.01269 -12.74824 -12.54772 -12.34566 -12.30274 -12.22882 -12.07590 -11.43690 -11.36246 -11.16424 -10.79935 -10.23917 -9.81978 -9.72542 -8.99015 -8.45370 -6.12997 -1.11597 -0.76205 0.40485 0.55800 0.75329 0.87136 1.31488 1.37775 1.44583 1.54811 1.82788 2.18420 2.20770 2.54451 2.82591 2.90794 3.15914 3.25880 3.41789 3.45568 3.69682 3.81503 3.94126 4.04176 4.14881 4.30799 4.36056 4.46759 4.50182 4.57740 4.63857 4.74000 4.79071 4.81449 5.06142 5.14956 5.18194 5.22648 5.31039 5.66950 5.74932 5.76958 6.04436 6.21056 6.35711 6.97248 7.00489 7.07168 7.81360 8.77686 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.002040 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.265597 B =13722.821675 C =14481.249681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.023 4.023 3 Si 1.014 2.986 4 H -0.250 1.250 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.408 4.408 8 H 0.104 0.896 9 O -0.232 6.232 10 C 0.110 3.890 11 C -0.234 4.234 12 C -0.071 4.071 13 C -0.164 4.164 14 C -0.059 4.059 15 C 0.172 3.828 16 N -0.696 5.696 17 C 0.564 3.436 18 O -0.557 6.557 19 C -0.055 4.055 20 C -0.095 4.095 21 C 0.112 3.888 22 N -0.293 5.293 23 N -0.123 5.123 24 N -0.031 5.031 25 N -0.342 5.342 26 C 0.227 3.773 27 C -0.031 4.031 28 C -0.178 4.178 29 H 0.271 0.729 30 H 0.116 0.884 31 H 0.146 0.854 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.417 0.583 36 H 0.212 0.788 37 H 0.229 0.771 38 H 0.181 0.819 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.185 -14.883 -6.044 18.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.221 4.221 3 Si 0.835 3.165 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.121 0.879 9 O -0.139 6.139 10 C 0.060 3.940 11 C -0.253 4.253 12 C -0.089 4.089 13 C -0.183 4.183 14 C -0.060 4.060 15 C 0.050 3.950 16 N -0.348 5.348 17 C 0.350 3.650 18 O -0.436 6.436 19 C -0.067 4.067 20 C -0.118 4.118 21 C -0.014 4.014 22 N -0.073 5.073 23 N -0.106 5.106 24 N -0.024 5.024 25 N -0.204 5.204 26 C -0.026 4.026 27 C -0.055 4.055 28 C -0.198 4.198 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.256 0.744 36 H 0.228 0.772 37 H 0.245 0.755 38 H 0.199 0.801 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.043 -16.201 -6.532 18.834 hybrid contribution 0.229 1.897 0.196 1.920 sum 7.272 -14.304 -6.336 17.252 Atomic orbital electron populations 1.70179 1.07970 1.28615 1.49109 1.26514 0.96773 1.02668 0.96118 0.84574 0.78421 0.75199 0.78354 1.17274 1.19539 1.19826 1.21817 0.92478 0.81371 1.52748 0.87919 1.83946 1.35931 1.12560 1.81475 1.19898 0.91587 0.87949 0.94577 1.21377 0.93115 1.00375 1.10448 1.21158 1.00352 0.91268 0.96156 1.21024 0.93115 0.98203 1.05944 1.19391 0.93805 0.92455 1.00319 1.20161 1.00439 0.90380 0.84056 1.45841 1.59199 1.19274 1.10473 1.17891 0.78053 0.81362 0.87717 1.90853 1.51780 1.61209 1.39734 1.20245 0.97790 0.94139 0.94515 1.21664 0.99676 1.02424 0.88047 1.22438 0.94207 0.82097 1.02671 1.49203 1.35500 1.16193 1.06438 1.82717 1.22276 1.00618 1.05000 1.77857 1.08312 1.12746 1.03473 1.75143 1.24566 1.18510 1.02168 1.22816 0.97777 0.90400 0.91584 1.20785 0.96768 0.95108 0.92805 1.20255 0.99577 0.90022 1.09914 0.91979 0.86588 0.83664 0.83066 0.91030 0.88551 0.74427 0.77174 0.75497 0.80133 0.87130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.93 13.67 21.61 0.30 -53.64 16 2 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 3 Si 1.01 40.39 29.55 68.60 2.03 42.41 16 4 H -0.25 -9.04 7.11 99.48 0.71 -8.34 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.41 -22.00 9.49 67.92 0.64 -21.35 16 8 H 0.10 5.03 5.20 -2.91 -0.02 5.02 16 9 O -0.23 -12.76 9.76 -22.76 -0.22 -12.98 16 10 C 0.11 4.73 6.65 22.58 0.15 4.88 16 11 C -0.23 -8.55 9.17 22.39 0.21 -8.34 16 12 C -0.07 -1.87 10.04 22.25 0.22 -1.65 16 13 C -0.16 -3.58 9.70 22.30 0.22 -3.37 16 14 C -0.06 -1.44 5.25 -19.88 -0.10 -1.54 16 15 C 0.17 3.26 5.80 85.63 0.50 3.76 16 16 N -0.70 -9.87 5.50 -469.72 -2.59 -12.46 16 17 C 0.56 9.28 7.78 86.78 0.68 9.95 16 18 O -0.56 -13.55 16.37 -3.90 -0.06 -13.61 16 19 C -0.06 -0.66 5.90 -19.86 -0.12 -0.77 16 20 C -0.09 -0.50 9.48 22.31 0.21 -0.28 16 21 C 0.11 0.80 11.18 83.25 0.93 1.73 16 22 N -0.29 -5.00 3.94 -193.23 -0.76 -5.76 16 23 N -0.12 -2.82 13.98 37.02 0.52 -2.30 16 24 N -0.03 -0.83 13.35 37.02 0.49 -0.34 16 25 N -0.34 -8.80 12.27 -55.73 -0.68 -9.48 16 26 C 0.23 4.51 8.02 134.05 1.07 5.58 16 27 C -0.03 -0.47 9.70 22.87 0.22 -0.25 16 28 C -0.18 -6.14 9.65 22.39 0.22 -5.93 16 29 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 30 H 0.12 4.45 5.64 -2.91 -0.02 4.44 16 31 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 32 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.07 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.10 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.42 3.79 6.53 -92.71 -0.61 3.18 16 36 H 0.21 -0.44 6.46 -2.91 -0.02 -0.45 16 37 H 0.23 -0.18 8.06 -2.91 -0.02 -0.20 16 38 H 0.18 2.76 7.67 -2.91 -0.02 2.74 16 39 H 0.11 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -78.92 351.23 5.07 -73.85 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.54 Total: 12.68 kcal Atomic # 6 Polarization: -23.88 SS G_CDS: 5.51 Total: -18.37 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -2.72 Total: -83.98 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.29 Total: -26.59 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -78.92 5.07 -73.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001126045090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.555 kcal (2) G-P(sol) polarization free energy of solvation -78.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds