Wall clock time and date at job start Tue Mar 31 2020 22:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38099 * 120.07770 * 2 1 4 4 Cl 1.73604 * 119.94139 * 359.97438 * 3 2 1 5 5 C 1.38444 * 120.11806 * 180.25255 * 3 2 1 6 6 C 1.38364 * 120.27943 * 359.44714 * 5 3 2 7 7 C 1.37940 * 120.15467 * 0.55459 * 6 5 3 8 8 C 1.39531 * 120.08201 * 179.97438 * 2 1 3 9 9 C 1.47852 * 120.13905 * 0.04371 * 8 2 1 10 10 O 1.21554 * 119.99958 * 6.19739 * 9 8 2 11 11 N 1.34776 * 119.99717 * 186.20319 * 9 8 2 12 12 C 1.46509 * 119.99700 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46856 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.46496 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99633 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47275 * 179.97438 * 15 14 13 17 17 O 1.21300 * 119.99663 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00154 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00000 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00108 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99986 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46817 * 89.99827 * 23 21 19 25 25 H 1.48498 * 109.47571 * 210.00002 * 23 21 19 26 26 H 1.48507 * 109.46872 * 330.00390 * 23 21 19 27 27 H 1.08998 * 109.46821 * 96.56578 * 1 2 3 28 28 H 1.09002 * 109.46715 * 216.55935 * 1 2 3 29 29 H 1.08997 * 109.46970 * 336.55925 * 1 2 3 30 30 H 1.07998 * 119.86227 * 179.72418 * 5 3 2 31 31 H 1.07997 * 119.92401 * 180.27532 * 6 5 3 32 32 H 1.08002 * 120.05776 * 179.70094 * 7 6 5 33 33 H 0.97003 * 120.00686 * 359.97438 * 11 9 8 34 34 H 1.08999 * 109.46978 * 299.99591 * 12 11 9 35 35 H 1.08999 * 109.46732 * 59.99959 * 12 11 9 36 36 H 1.08999 * 109.46992 * 299.99581 * 13 12 11 37 37 H 1.08996 * 109.47000 * 60.00285 * 13 12 11 38 38 H 1.00894 * 111.00171 * 56.04598 * 14 13 12 39 39 H 1.08997 * 109.46702 * 299.99741 * 15 14 13 40 40 H 1.08998 * 109.47450 * 59.99379 * 15 14 13 41 41 H 0.96997 * 119.99994 * 0.02562 * 18 16 15 42 42 H 0.97006 * 120.00248 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3317 2.6988 -0.0007 5 6 3.5836 1.1960 -0.0053 6 6 4.2821 0.0017 0.0009 7 6 3.6024 -1.1986 0.0009 8 6 2.2065 -1.2074 0.0005 9 6 1.4721 -2.4907 0.0001 10 8 0.2620 -2.4984 -0.1143 11 7 2.1446 -3.6518 0.1268 12 6 1.4170 -4.9234 0.1258 13 6 2.4083 -6.0783 0.2832 14 7 1.6787 -7.3533 0.2816 15 6 2.6004 -8.4873 0.4318 16 6 1.8176 -9.7751 0.4264 17 8 0.6105 -9.7505 0.3094 18 7 2.4587 -10.9539 0.5515 19 6 1.7466 -12.1255 0.5460 20 1 0.6719 -12.1037 0.4411 21 6 2.4075 -13.3408 0.6755 22 7 3.7151 -13.3673 0.8027 23 14 1.4372 -14.9370 0.6688 24 1 1.3139 -15.4354 -0.7245 25 1 2.1426 -15.9487 1.4958 26 1 0.0835 -14.6957 1.2298 27 1 -0.3633 -0.1175 -1.0209 28 1 -0.3633 -0.8255 0.6122 29 1 -0.3633 0.9428 0.4088 30 1 4.1207 2.1330 -0.0098 31 1 5.3621 0.0092 0.0013 32 1 4.1492 -2.1300 0.0009 33 1 3.1103 -3.6457 0.2178 34 1 0.7089 -4.9375 0.9544 35 1 0.8776 -5.0327 -0.8151 36 1 3.1167 -6.0644 -0.5451 37 1 2.9472 -5.9688 1.2242 38 1 1.1199 -7.4492 -0.5530 39 1 3.3107 -8.4901 -0.3949 40 1 3.1401 -8.3946 1.3742 41 1 3.4239 -10.9735 0.6454 42 1 4.1765 -14.2158 0.8935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127875548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:27 Heat of formation + Delta-G solvation = -51.836965 kcal Electronic energy + Delta-G solvation = -24986.298507 eV Core-core repulsion = 20992.016973 eV Total energy + Delta-G solvation = -3994.281535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.83374 -38.94629 -38.32885 -36.89745 -36.41350 -34.61476 -33.81952 -33.05842 -31.75572 -31.24180 -29.33228 -27.49039 -26.07689 -24.44389 -23.70555 -22.47503 -21.79789 -20.90986 -19.31563 -18.34631 -17.91069 -16.73652 -16.42494 -16.23067 -15.92304 -15.74519 -15.64083 -15.36938 -14.66346 -14.42420 -14.37686 -13.95590 -13.77106 -13.74500 -13.44824 -13.18619 -12.79197 -12.65788 -12.46571 -12.34823 -12.11749 -11.96500 -11.92178 -11.54994 -11.49315 -11.46006 -11.16653 -11.04901 -10.40531 -10.23896 -9.98520 -9.57333 -9.53194 -9.27295 -9.15339 -8.53578 -8.16636 -7.98855 -6.44032 -3.84914 0.24041 0.62788 1.61027 2.40170 2.74067 3.16745 3.24488 3.25728 3.31963 3.87358 4.05487 4.16198 4.20813 4.29604 4.39866 4.45950 4.72207 4.78624 4.91849 5.00278 5.14137 5.17163 5.23437 5.25641 5.33010 5.50515 5.56950 5.68437 5.69000 5.75644 5.79549 5.84553 5.90690 5.96478 6.12412 6.21645 6.24287 7.04127 7.15675 7.52721 7.53434 7.87599 8.03746 8.58439 9.15579 9.51283 10.02574 10.73614 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040753 B = 0.001445 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.907101 B =19377.768387 C =20023.491592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.012 4.012 3 C -0.050 4.050 4 Cl -0.060 7.060 5 C -0.082 4.082 6 C -0.123 4.123 7 C -0.077 4.077 8 C -0.127 4.127 9 C 0.558 3.442 10 O -0.523 6.523 11 N -0.722 5.722 12 C 0.120 3.880 13 C 0.049 3.951 14 N -0.665 5.665 15 C 0.053 3.947 16 C 0.439 3.561 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.134 0.866 33 H 0.399 0.601 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.353 0.647 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.392 0.608 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.853 30.571 -1.897 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.014 4.014 3 C -0.077 4.077 4 Cl -0.031 7.031 5 C -0.100 4.100 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.131 4.131 9 C 0.345 3.655 10 O -0.400 6.400 11 N -0.375 5.375 12 C -0.003 4.003 13 C -0.081 4.081 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.225 3.775 17 O -0.466 6.466 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.157 0.843 32 H 0.151 0.849 33 H 0.234 0.766 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.225 0.775 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.041 30.526 -1.362 30.822 hybrid contribution 1.314 -0.751 -0.773 1.699 sum 5.355 29.775 -2.135 30.328 Atomic orbital electron populations 1.21207 0.88898 1.04022 1.04323 1.19899 0.97709 0.89887 0.93871 1.20749 0.92464 0.87080 1.07377 1.98374 1.76843 1.30994 1.96906 1.21273 0.91854 0.99620 0.97301 1.21054 1.00597 0.91284 1.01138 1.21425 0.92838 0.99015 0.96353 1.19731 0.93527 0.92950 1.06880 1.18063 0.87111 0.83384 0.76953 1.90774 1.13484 1.86930 1.48807 1.45821 1.10981 1.06011 1.74675 1.21334 0.94831 0.80652 1.03508 1.22082 0.95153 0.89626 1.01266 1.59920 1.23782 0.99410 1.46735 1.21669 0.94126 0.90615 1.01600 1.19770 0.88506 0.84541 0.84719 1.90538 1.14151 1.86841 1.55074 1.41851 1.09772 1.04688 1.63625 1.19719 0.93692 0.82578 1.46992 0.87866 1.25263 0.95777 0.99643 0.97210 1.69611 1.07187 1.27590 1.49923 0.85847 0.79484 0.80687 0.78218 1.20415 1.20912 1.19369 0.89991 0.88046 0.91536 0.84421 0.84287 0.84860 0.76618 0.89870 0.91042 0.94895 0.90411 0.82748 0.93699 0.89451 0.77459 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.44 36.01 0.30 -0.93 16 2 C -0.01 -0.11 5.92 -104.19 -0.62 -0.73 16 3 C -0.05 -0.40 6.31 -39.56 -0.25 -0.65 16 4 Cl -0.06 -0.46 27.17 -51.86 -1.41 -1.87 16 5 C -0.08 -0.49 9.82 -39.46 -0.39 -0.88 16 6 C -0.12 -0.62 10.03 -39.64 -0.40 -1.02 16 7 C -0.08 -0.46 9.52 -39.18 -0.37 -0.84 16 8 C -0.13 -1.12 5.87 -104.97 -0.62 -1.74 16 9 C 0.56 5.95 7.70 -12.33 -0.09 5.86 16 10 O -0.52 -7.27 13.35 5.32 0.07 -7.20 16 11 N -0.72 -6.26 5.51 -61.24 -0.34 -6.60 16 12 C 0.12 1.28 5.93 -4.03 -0.02 1.25 16 13 C 0.05 0.52 5.80 -3.82 -0.02 0.50 16 14 N -0.67 -10.14 6.12 -115.06 -0.70 -10.84 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 17 O -0.58 -15.71 15.78 5.54 0.09 -15.62 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 1.14 5.85 -51.93 -0.30 0.84 16 29 H 0.07 0.56 6.64 -51.93 -0.34 0.22 16 30 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 32 H 0.13 0.45 6.45 -52.49 -0.34 0.11 16 33 H 0.40 2.26 6.55 -40.82 -0.27 1.99 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.39 9.30 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 372.05 15.07 5.61 5.61 Total: -1.00 -33.21 372.05 -9.10 -42.31 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.22 Total: 12.12 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -2.84 Total: 3.84 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.38 Total: -55.08 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: 0.16 Total: -22.82 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.41 Total: -1.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.21 -9.10 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127875548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.526 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds