Wall clock time and date at job start Tue Mar 31 2020 22:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38099 * 120.07770 * 2 1 4 4 Cl 1.73604 * 119.94139 * 359.97438 * 3 2 1 5 5 C 1.38444 * 120.11806 * 180.25255 * 3 2 1 6 6 C 1.38364 * 120.27943 * 359.44714 * 5 3 2 7 7 C 1.37940 * 120.15467 * 0.55459 * 6 5 3 8 8 C 1.39531 * 120.08201 * 179.97438 * 2 1 3 9 9 C 1.47852 * 120.13905 * 0.04371 * 8 2 1 10 10 O 1.21554 * 119.99958 * 6.19739 * 9 8 2 11 11 N 1.34776 * 119.99717 * 186.20319 * 9 8 2 12 12 C 1.46509 * 119.99700 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46856 * 180.02562 * 12 11 9 14 14 N 1.46903 * 109.46496 * 180.02562 * 13 12 11 15 15 C 1.46904 * 110.99633 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47275 * 179.97438 * 15 14 13 17 17 O 1.21300 * 119.99663 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00154 * 179.97438 * 16 15 14 19 19 C 1.37100 * 120.00000 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00108 * 0.02562 * 19 18 16 21 21 C 1.38946 * 119.99986 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99926 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46817 * 89.99827 * 23 21 19 25 25 H 1.48498 * 109.47571 * 210.00002 * 23 21 19 26 26 H 1.48507 * 109.46872 * 330.00390 * 23 21 19 27 27 H 1.08998 * 109.46821 * 96.56578 * 1 2 3 28 28 H 1.09002 * 109.46715 * 216.55935 * 1 2 3 29 29 H 1.08997 * 109.46970 * 336.55925 * 1 2 3 30 30 H 1.07998 * 119.86227 * 179.72418 * 5 3 2 31 31 H 1.07997 * 119.92401 * 180.27532 * 6 5 3 32 32 H 1.08002 * 120.05776 * 179.70094 * 7 6 5 33 33 H 0.97003 * 120.00686 * 359.97438 * 11 9 8 34 34 H 1.08999 * 109.46978 * 299.99591 * 12 11 9 35 35 H 1.08999 * 109.46732 * 59.99959 * 12 11 9 36 36 H 1.08999 * 109.46992 * 299.99581 * 13 12 11 37 37 H 1.08996 * 109.47000 * 60.00285 * 13 12 11 38 38 H 1.00894 * 111.00171 * 56.04598 * 14 13 12 39 39 H 1.08997 * 109.46702 * 299.99741 * 15 14 13 40 40 H 1.08998 * 109.47450 * 59.99379 * 15 14 13 41 41 H 0.96997 * 119.99994 * 0.02562 * 18 16 15 42 42 H 0.97006 * 120.00248 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1992 1.1950 0.0000 4 17 1.3317 2.6988 -0.0007 5 6 3.5836 1.1960 -0.0053 6 6 4.2821 0.0017 0.0009 7 6 3.6024 -1.1986 0.0009 8 6 2.2065 -1.2074 0.0005 9 6 1.4721 -2.4907 0.0001 10 8 0.2620 -2.4984 -0.1143 11 7 2.1446 -3.6518 0.1268 12 6 1.4170 -4.9234 0.1258 13 6 2.4083 -6.0783 0.2832 14 7 1.6787 -7.3533 0.2816 15 6 2.6004 -8.4873 0.4318 16 6 1.8176 -9.7751 0.4264 17 8 0.6105 -9.7505 0.3094 18 7 2.4587 -10.9539 0.5515 19 6 1.7466 -12.1255 0.5460 20 1 0.6719 -12.1037 0.4411 21 6 2.4075 -13.3408 0.6755 22 7 3.7151 -13.3673 0.8027 23 14 1.4372 -14.9370 0.6688 24 1 1.3139 -15.4354 -0.7245 25 1 2.1426 -15.9487 1.4958 26 1 0.0835 -14.6957 1.2298 27 1 -0.3633 -0.1175 -1.0209 28 1 -0.3633 -0.8255 0.6122 29 1 -0.3633 0.9428 0.4088 30 1 4.1207 2.1330 -0.0098 31 1 5.3621 0.0092 0.0013 32 1 4.1492 -2.1300 0.0009 33 1 3.1103 -3.6457 0.2178 34 1 0.7089 -4.9375 0.9544 35 1 0.8776 -5.0327 -0.8151 36 1 3.1167 -6.0644 -0.5451 37 1 2.9472 -5.9688 1.2242 38 1 1.1199 -7.4492 -0.5530 39 1 3.3107 -8.4901 -0.3949 40 1 3.1401 -8.3946 1.3742 41 1 3.4239 -10.9735 0.6454 42 1 4.1765 -14.2158 0.8935 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127875548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:26 Heat of formation + Delta-G solvation = -76.544249 kcal Electronic energy + Delta-G solvation = -24987.369896 eV Core-core repulsion = 20992.016973 eV Total energy + Delta-G solvation = -3995.352923 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52296 -40.16390 -39.57516 -37.53510 -37.42514 -36.03193 -35.39091 -33.66908 -33.26906 -32.38605 -30.35062 -28.25937 -27.51730 -25.75460 -24.65837 -23.29983 -22.46895 -21.65834 -21.08847 -19.91631 -19.01485 -17.77263 -17.47356 -17.23601 -16.83051 -16.58752 -16.41698 -16.35079 -16.24859 -15.83823 -15.48405 -15.10988 -14.97617 -14.63791 -14.35347 -14.25116 -13.98825 -13.52230 -13.43176 -13.33387 -13.27472 -12.97732 -12.93587 -12.66301 -12.53558 -12.50152 -12.41740 -12.35597 -12.11949 -11.74134 -11.50449 -10.82407 -10.35812 -10.30170 -10.00927 -9.90887 -9.71284 -9.37046 -8.46523 -5.95043 -0.31703 0.10859 1.05814 1.38467 1.42709 1.55104 1.72487 1.94775 2.06101 2.30799 2.65178 3.01546 3.21056 3.49777 3.64208 3.69180 3.82948 3.93072 3.96006 4.12486 4.26589 4.32982 4.47282 4.48299 4.52500 4.62574 4.63012 4.66966 4.71390 4.90173 4.95142 5.11812 5.12480 5.23686 5.25764 5.41549 5.42955 5.67152 5.85375 6.07840 6.33345 6.45526 6.60821 7.13330 7.13491 7.56952 8.12762 8.70674 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.040753 B = 0.001445 C = 0.001398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.907101 B =19377.768387 C =20023.491592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.035 4.035 3 C -0.062 4.062 4 Cl -0.065 7.065 5 C -0.078 4.078 6 C -0.113 4.113 7 C -0.070 4.070 8 C -0.145 4.145 9 C 0.553 3.447 10 O -0.566 6.566 11 N -0.706 5.706 12 C 0.128 3.872 13 C 0.058 3.942 14 N -0.687 5.687 15 C 0.069 3.931 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.336 4.336 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.275 1.275 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.161 0.839 31 H 0.176 0.824 32 H 0.164 0.836 33 H 0.416 0.584 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.346 0.654 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.398 0.602 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.041 31.278 -1.881 32.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.037 4.037 3 C -0.089 4.089 4 Cl -0.036 7.036 5 C -0.097 4.097 6 C -0.131 4.131 7 C -0.089 4.089 8 C -0.148 4.148 9 C 0.342 3.658 10 O -0.446 6.446 11 N -0.360 5.360 12 C 0.004 3.996 13 C -0.071 4.071 14 N -0.320 5.320 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.466 4.466 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.200 1.200 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.178 0.822 31 H 0.193 0.807 32 H 0.181 0.819 33 H 0.255 0.745 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.165 0.835 39 H 0.092 0.908 40 H 0.128 0.872 41 H 0.232 0.768 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.302 31.251 -1.339 32.121 hybrid contribution 0.358 -0.882 -0.778 1.229 sum 7.660 30.369 -2.117 31.392 Atomic orbital electron populations 1.21049 0.90170 1.03308 1.03246 1.19928 0.97219 0.90976 0.95561 1.20872 0.93375 0.86426 1.08207 1.98368 1.77192 1.31052 1.96982 1.21650 0.90975 1.01270 0.95770 1.21499 1.02291 0.90229 0.99053 1.21775 0.91464 1.00931 0.94696 1.19664 0.94825 0.91516 1.08813 1.18480 0.86791 0.84437 0.76142 1.90759 1.15457 1.87575 1.50835 1.45599 1.11746 1.04772 1.73848 1.21086 0.94812 0.81733 1.01960 1.22079 0.94867 0.86954 1.03200 1.59882 1.24562 1.00723 1.46820 1.21523 0.93552 0.87399 1.03880 1.20966 0.88463 0.86097 0.82273 1.90508 1.16521 1.87804 1.56423 1.41910 1.09908 1.04774 1.64323 1.19665 0.93027 0.84503 1.49385 0.90474 1.25998 0.96777 1.02084 0.96199 1.69661 1.07983 1.28671 1.49605 0.84949 0.77893 0.77048 0.78573 1.19623 1.19477 1.19991 0.91082 0.90218 0.90971 0.82178 0.80669 0.81900 0.74502 0.92168 0.92295 0.92249 0.88693 0.83542 0.90820 0.87236 0.76824 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.55 8.44 71.24 0.60 -1.95 16 2 C -0.04 -0.65 5.92 -19.58 -0.12 -0.77 16 3 C -0.06 -0.92 6.31 22.29 0.14 -0.78 16 4 Cl -0.06 -0.96 27.17 -2.72 -0.07 -1.03 16 5 C -0.08 -0.71 9.82 22.35 0.22 -0.49 16 6 C -0.11 -0.68 10.03 22.23 0.22 -0.45 16 7 C -0.07 -0.61 9.52 22.53 0.21 -0.39 16 8 C -0.14 -2.41 5.87 -20.09 -0.12 -2.53 16 9 C 0.55 11.80 7.70 86.79 0.67 12.46 16 10 O -0.57 -16.73 13.35 -3.88 -0.05 -16.78 16 11 N -0.71 -11.20 5.51 -465.94 -2.57 -13.77 16 12 C 0.13 2.65 5.93 86.38 0.51 3.16 16 13 C 0.06 1.08 5.80 86.30 0.50 1.58 16 14 N -0.69 -20.02 6.12 -517.92 -3.17 -23.19 16 15 C 0.07 2.16 6.17 85.56 0.53 2.68 16 16 C 0.43 20.20 7.82 87.66 0.69 20.88 16 17 O -0.63 -34.64 15.78 -3.09 -0.05 -34.69 16 18 N -0.57 -28.75 5.29 -306.98 -1.62 -30.38 16 19 C -0.34 -18.99 9.68 84.04 0.81 -18.18 16 20 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.72 13.05 21.66 0.28 -48.43 16 23 Si 0.99 42.66 29.55 68.60 2.03 44.69 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 27 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.08 2.01 5.85 -2.39 -0.01 2.00 16 29 H 0.07 1.33 6.64 -2.39 -0.02 1.32 16 30 H 0.16 0.70 8.06 -2.91 -0.02 0.67 16 31 H 0.18 -0.17 8.06 -2.91 -0.02 -0.19 16 32 H 0.16 0.33 6.45 -2.91 -0.02 0.32 16 33 H 0.42 3.38 6.55 -92.71 -0.61 2.77 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.35 10.87 8.43 -89.70 -0.76 10.11 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.40 18.73 7.90 -92.71 -0.73 17.99 16 42 H 0.28 13.79 8.31 -92.70 -0.77 13.02 16 Total: -1.00 -75.43 372.05 -0.88 -76.31 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -1.00 Total: 32.13 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 5.34 Total: 15.14 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -7.08 Total: -115.77 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.10 Total: -51.47 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.07 Total: -1.03 kcal Total: -75.43 -0.88 -76.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127875548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.231 kcal (2) G-P(sol) polarization free energy of solvation -75.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds