Wall clock time and date at job start Tue Mar 31 2020 22:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00410 * 2 1 4 4 H 1.48500 * 109.47298 * 275.21553 * 3 2 1 5 5 H 1.48508 * 109.47302 * 35.21403 * 3 2 1 6 6 H 1.48500 * 109.47294 * 155.21390 * 3 2 1 7 7 C 1.38894 * 120.00049 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99661 * 347.64413 * 7 2 1 9 9 N 1.37212 * 120.00094 * 167.63397 * 7 2 1 10 10 C 1.34779 * 120.00007 * 131.47783 * 9 7 2 11 11 O 1.21267 * 120.00189 * 179.97438 * 10 9 7 12 12 C 1.50700 * 119.99699 * 359.97438 * 10 9 7 13 13 N 1.46500 * 109.46768 * 180.02562 * 12 10 9 14 14 N 1.40163 * 126.21394 * 269.68916 * 13 12 10 15 15 C 1.31260 * 107.88814 * 179.82273 * 14 13 12 16 16 C 1.41798 * 132.01194 * 180.02562 * 15 14 13 17 17 C 1.35526 * 119.32391 * 180.42687 * 16 15 14 18 18 C 1.40996 * 119.85902 * 359.97395 * 17 16 15 19 19 C 1.34451 * 120.59982 * 0.02562 * 18 17 16 20 20 N 1.37457 * 120.68501 * 0.02562 * 19 18 17 21 21 C 1.34816 * 131.80375 * 179.97438 * 20 19 18 22 22 O 1.21889 * 126.05775 * 0.04151 * 21 20 19 23 23 C 1.39429 * 120.00040 * 311.47283 * 9 7 2 24 24 C 1.39067 * 119.69664 * 346.80686 * 23 9 7 25 25 C 1.38381 * 119.09686 * 180.02562 * 24 23 9 26 26 C 1.38827 * 118.49013 * 359.97438 * 25 24 23 27 27 C 1.38138 * 119.31310 * 0.25844 * 26 25 24 28 28 N 1.31881 * 120.85585 * 359.46925 * 27 26 25 29 29 H 0.97006 * 119.99716 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47226 * 300.00534 * 12 10 9 31 31 H 1.09000 * 109.47477 * 60.00344 * 12 10 9 32 32 H 1.07997 * 120.33697 * 0.42726 * 16 15 14 33 33 H 1.07995 * 120.06770 * 180.02562 * 17 16 15 34 34 H 1.08003 * 119.69680 * 180.02562 * 18 17 16 35 35 H 1.07999 * 119.65708 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.45098 * 0.02562 * 24 23 9 37 37 H 1.08001 * 120.75090 * 180.02562 * 25 24 23 38 38 H 1.08007 * 120.33747 * 179.97438 * 26 25 24 39 39 H 1.08004 * 119.57563 * 179.74242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3855 2.1100 -1.3943 5 1 1.5051 2.6184 0.8074 6 1 3.5965 1.4107 0.5869 7 6 2.0086 -1.2028 0.0005 8 1 1.4873 -2.1272 0.2011 9 7 3.3568 -1.2168 -0.2539 10 6 4.1889 -1.8981 0.5584 11 8 5.3804 -1.9108 0.3332 12 6 3.6386 -2.6442 1.7464 13 7 4.7362 -3.2970 2.4643 14 7 5.2223 -4.5913 2.2341 15 6 6.2074 -4.8073 3.0742 16 6 7.0487 -5.9297 3.2818 17 6 7.9988 -5.8776 4.2469 18 6 8.1407 -4.7138 5.0301 19 6 7.3406 -3.6521 4.8295 20 7 6.3686 -3.6798 3.8580 21 6 5.4591 -2.7633 3.4703 22 8 5.3159 -1.6495 3.9443 23 6 3.8660 -0.5261 -1.3529 24 6 2.9994 -0.0597 -2.3354 25 6 3.5182 0.6238 -3.4211 26 6 4.8912 0.8184 -3.4865 27 6 5.6933 0.3233 -2.4768 28 7 5.1701 -0.3200 -1.4512 29 1 -0.4850 0.8401 -0.0004 30 1 3.1341 -1.9447 2.4129 31 1 2.9283 -3.3974 1.4054 32 1 6.9335 -6.8171 2.6771 33 1 8.6464 -6.7254 4.4150 34 1 8.8990 -4.6750 5.7982 35 1 7.4623 -2.7686 5.4386 36 1 1.9359 -0.2286 -2.2523 37 1 2.8695 0.9980 -4.1993 38 1 5.3280 1.3474 -4.3207 39 1 6.7624 0.4686 -2.5255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130347155.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:30 Heat of formation + Delta-G solvation = 123.605489 kcal Electronic energy + Delta-G solvation = -28987.774998 eV Core-core repulsion = 24899.993725 eV Total energy + Delta-G solvation = -4087.781273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.85431 -40.21002 -38.61914 -37.89504 -36.84749 -35.27306 -33.76991 -32.52519 -32.38310 -31.57250 -29.96585 -29.06601 -27.72196 -25.43603 -24.33638 -23.05191 -22.82102 -22.30222 -21.64097 -19.51233 -18.51996 -18.36144 -17.29230 -17.17839 -16.33783 -16.19637 -16.03987 -15.56246 -15.24656 -15.08614 -15.02892 -14.59242 -14.34070 -14.05817 -13.66707 -13.28181 -13.21177 -12.97822 -12.79861 -12.48482 -12.41531 -12.09539 -11.89043 -11.71030 -11.65564 -11.45498 -11.11418 -10.86598 -10.66868 -10.24293 -10.17837 -9.82664 -9.66965 -9.27862 -9.14617 -8.77871 -8.28646 -7.62098 -7.40713 -6.72430 -4.57529 0.49903 1.50536 1.68851 1.78096 2.00555 2.67762 3.01469 3.05844 3.15964 3.28969 3.32613 3.48743 3.88586 4.01820 4.11618 4.48674 4.53885 4.64714 4.83254 4.88067 5.04864 5.13894 5.21505 5.41060 5.52870 5.69748 5.73019 5.74355 5.83797 5.86074 5.89879 6.01124 6.03021 6.15388 6.34093 6.48190 6.63436 6.66979 6.86440 7.06872 7.42946 7.63093 7.78368 7.94856 8.07009 8.49704 8.73009 8.97533 9.39346 10.32379 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003676 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.708217 B = 7616.146757 C = 8335.750758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.091 3.909 3 Si 0.855 3.145 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.375 4.375 8 H 0.118 0.882 9 N -0.403 5.403 10 C 0.482 3.518 11 O -0.505 6.505 12 C 0.158 3.842 13 N -0.410 5.410 14 N -0.268 5.268 15 C 0.281 3.719 16 C -0.114 4.114 17 C -0.053 4.053 18 C -0.192 4.192 19 C 0.135 3.865 20 N -0.481 5.481 21 C 0.649 3.351 22 O -0.537 6.537 23 C 0.357 3.643 24 C -0.194 4.194 25 C -0.062 4.062 26 C -0.232 4.232 27 C 0.117 3.883 28 N -0.489 5.489 29 H 0.282 0.718 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.152 0.848 35 H 0.167 0.833 36 H 0.151 0.849 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.854 -8.449 5.110 14.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.121 4.121 3 Si 0.680 3.320 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.501 4.501 8 H 0.135 0.865 9 N -0.117 5.117 10 C 0.269 3.731 11 O -0.378 6.378 12 C 0.034 3.966 13 N -0.228 5.228 14 N -0.092 5.092 15 C 0.015 3.985 16 C -0.136 4.136 17 C -0.077 4.077 18 C -0.216 4.216 19 C 0.016 3.984 20 N -0.197 5.197 21 C 0.350 3.650 22 O -0.409 6.409 23 C 0.128 3.872 24 C -0.218 4.218 25 C -0.088 4.088 26 C -0.254 4.254 27 C -0.042 4.042 28 N -0.205 5.205 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.173 0.827 33 H 0.163 0.837 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.169 0.831 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.838 -8.145 5.202 14.521 hybrid contribution 0.018 1.703 -0.251 1.722 sum 10.855 -6.441 4.951 13.559 Atomic orbital electron populations 1.69669 1.06045 1.28954 1.43007 1.25375 0.95175 0.98635 0.92923 0.87139 0.81469 0.83294 0.80120 1.17872 1.20563 1.18210 1.19117 0.80050 0.96514 1.54437 0.86489 1.41488 1.08017 1.43162 1.19059 1.20978 0.86519 0.81712 0.83929 1.90703 1.14925 1.60932 1.71269 1.21326 0.84194 0.97603 0.93429 1.48486 1.32327 1.11020 1.30974 1.77705 1.12320 0.98159 1.21048 1.21487 0.96679 0.89160 0.91161 1.20231 0.95861 0.95953 1.01542 1.21107 0.95860 0.97858 0.92909 1.20703 1.02888 0.93408 1.04553 1.21672 0.87026 1.00586 0.89153 1.43529 1.29695 1.15922 1.30531 1.16461 0.81195 0.84185 0.83175 1.91129 1.71551 1.16267 1.61925 1.19069 0.88428 0.92208 0.87513 1.21785 1.02605 1.02889 0.94474 1.21276 0.95035 0.95697 0.96810 1.21805 0.94644 1.06945 1.02002 1.22466 0.99676 0.92838 0.89210 1.67651 1.12179 1.16147 1.24505 0.90757 0.84936 0.85372 0.82703 0.83724 0.83050 0.81607 0.83093 0.85559 0.85936 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.73 13.96 55.49 0.77 -20.95 16 2 C 0.09 2.29 4.14 -17.49 -0.07 2.22 16 3 Si 0.86 20.81 24.50 -169.99 -4.16 16.65 16 4 H -0.25 -5.92 6.16 56.52 0.35 -5.58 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.26 -6.96 7.07 56.52 0.40 -6.56 16 7 C -0.38 -9.31 8.07 -14.90 -0.12 -9.43 16 8 H 0.12 2.88 7.63 -52.48 -0.40 2.48 16 9 N -0.40 -10.09 2.28 -60.71 -0.14 -10.22 16 10 C 0.48 11.86 7.66 -10.98 -0.08 11.78 16 11 O -0.50 -13.68 14.77 5.57 0.08 -13.59 16 12 C 0.16 3.26 5.63 -5.19 -0.03 3.23 16 13 N -0.41 -8.35 3.11 -66.31 -0.21 -8.56 16 14 N -0.27 -4.91 12.62 31.35 0.40 -4.51 16 15 C 0.28 4.29 7.87 -155.68 -1.23 3.07 16 16 C -0.11 -1.16 10.12 -39.19 -0.40 -1.56 16 17 C -0.05 -0.39 10.06 -39.51 -0.40 -0.78 16 18 C -0.19 -1.49 9.97 -39.88 -0.40 -1.88 16 19 C 0.14 1.53 10.90 -16.37 -0.18 1.35 16 20 N -0.48 -7.72 2.93 -66.47 -0.19 -7.92 16 21 C 0.65 13.22 8.70 -86.79 -0.75 12.47 16 22 O -0.54 -12.35 17.86 5.02 0.09 -12.26 16 23 C 0.36 8.82 5.11 -154.64 -0.79 8.03 16 24 C -0.19 -4.33 6.06 -39.22 -0.24 -4.57 16 25 C -0.06 -1.17 9.94 -39.31 -0.39 -1.56 16 26 C -0.23 -4.08 10.11 -39.40 -0.40 -4.48 16 27 C 0.12 2.34 11.18 -17.57 -0.20 2.14 16 28 N -0.49 -12.03 8.01 -12.34 -0.10 -12.13 16 29 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 30 H 0.13 2.69 8.05 -51.93 -0.42 2.27 16 31 H 0.13 2.32 7.80 -51.93 -0.41 1.92 16 32 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.15 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.15 3.47 6.02 -52.48 -0.32 3.16 16 37 H 0.13 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.15 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -35.78 340.09 -7.69 -43.47 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.69 Total: 4.88 kcal Atomic # 6 Polarization: 25.69 SS G_CDS: -5.67 Total: 20.03 kcal Atomic # 7 Polarization: -64.83 SS G_CDS: 0.53 Total: -64.29 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: 0.17 Total: -25.85 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.16 Total: 16.65 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.78 -7.69 -43.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130347155.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.075 kcal (2) G-P(sol) polarization free energy of solvation -35.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds