Wall clock time and date at job start Tue Mar 31 2020 22:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38364 * 119.92001 * 2 1 4 4 C 1.38444 * 120.27984 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.94344 * 180.02562 * 4 3 2 6 6 C 1.38105 * 120.12030 * 359.97438 * 4 3 2 7 7 C 1.39546 * 119.83435 * 0.02562 * 6 4 3 8 8 C 1.47847 * 120.13788 * 179.97438 * 7 6 4 9 9 O 1.21552 * 120.00330 * 180.02562 * 8 7 6 10 10 N 1.34785 * 119.99873 * 0.02562 * 8 7 6 11 11 C 1.46497 * 119.99924 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47181 * 180.02562 * 11 10 8 13 13 N 1.46897 * 109.47441 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00154 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46848 * 180.02562 * 14 13 12 16 16 O 1.21294 * 120.00549 * 359.97438 * 15 14 13 17 17 N 1.34782 * 120.00062 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00481 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99885 * 0.02562 * 18 17 15 20 20 C 1.38944 * 120.00143 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00188 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00146 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46949 * 59.99845 * 22 20 18 24 24 H 1.48490 * 109.47353 * 180.02562 * 22 20 18 25 25 H 1.48511 * 109.46935 * 300.00466 * 22 20 18 26 26 C 1.37943 * 119.92009 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46769 * 89.99428 * 1 2 3 28 28 H 1.08992 * 109.47332 * 209.99678 * 1 2 3 29 29 H 1.08998 * 109.46846 * 330.00252 * 1 2 3 30 30 H 1.07996 * 119.86026 * 0.02562 * 3 2 1 31 31 H 1.07989 * 120.08317 * 179.74454 * 6 4 3 32 32 H 0.97001 * 119.99514 * 0.02562 * 10 8 7 33 33 H 1.09007 * 109.46813 * 299.99878 * 11 10 8 34 34 H 1.08998 * 109.47122 * 59.99651 * 11 10 8 35 35 H 1.09002 * 109.46797 * 300.00247 * 12 11 10 36 36 H 1.08993 * 109.47199 * 59.99806 * 12 11 10 37 37 H 1.00904 * 110.99704 * 56.04164 * 13 12 11 38 38 H 1.09004 * 109.46846 * 299.99745 * 14 13 12 39 39 H 1.08994 * 109.47157 * 60.00158 * 14 13 12 40 40 H 0.97006 * 119.99530 * 0.02562 * 17 15 14 41 41 H 0.97003 * 120.00135 * 179.97438 * 21 20 18 42 42 H 1.07998 * 120.06041 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5816 1.2079 0.0005 5 17 4.4386 2.7176 0.0012 6 6 4.2821 0.0177 0.0016 7 6 3.5910 -1.1946 0.0016 8 6 4.3342 -2.4727 0.0022 9 8 3.7297 -3.5273 0.0017 10 7 5.6820 -2.4685 0.0032 11 6 6.4184 -3.7349 0.0044 12 6 7.9218 -3.4507 0.0060 13 7 8.6603 -4.7206 0.0066 14 6 10.1104 -4.4863 0.0076 15 6 10.8329 -5.8088 0.0074 16 8 10.2019 -6.8447 0.0071 17 7 12.1803 -5.8406 0.0077 18 6 12.8377 -7.0437 0.0081 19 1 12.2758 -7.9660 0.0078 20 6 14.2267 -7.0765 0.0079 21 7 14.9105 -5.9542 0.0078 22 14 15.1224 -8.7158 0.0078 23 1 14.7451 -9.4858 -1.2047 24 1 16.5883 -8.4789 0.0081 25 1 14.7455 -9.4859 1.2204 26 6 2.1951 -1.1956 0.0005 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3633 0.8900 0.5138 30 1 1.6536 2.1324 0.0004 31 1 5.3620 0.0252 -0.0021 32 1 6.1644 -1.6269 0.0040 33 1 6.1562 -4.3069 0.8945 34 1 6.1575 -4.3077 -0.8855 35 1 8.1843 -2.8785 -0.8838 36 1 8.1823 -2.8782 0.8961 37 1 8.3880 -5.2975 -0.7752 38 1 10.3877 -3.9211 -0.8823 39 1 10.3865 -3.9211 0.8977 40 1 12.6850 -5.0122 0.0084 41 1 15.8802 -5.9771 0.0080 42 1 1.6548 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131363207.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:29 Heat of formation + Delta-G solvation = -83.960985 kcal Electronic energy + Delta-G solvation = -24722.617913 eV Core-core repulsion = 20726.943376 eV Total energy + Delta-G solvation = -3995.674537 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43640 -40.17528 -39.73514 -37.60762 -37.43272 -36.02590 -35.39341 -33.90670 -33.26231 -32.11393 -30.53487 -28.11177 -27.63703 -25.92036 -24.65189 -23.14607 -22.94051 -21.36567 -21.10036 -19.92301 -18.95585 -17.80723 -17.61045 -17.27786 -17.06678 -16.59614 -16.32258 -16.30717 -16.20559 -15.80445 -15.40349 -15.20736 -15.00011 -14.72739 -14.53937 -14.09456 -14.00981 -13.71876 -13.51653 -13.32990 -13.28935 -12.94202 -12.76912 -12.61322 -12.54068 -12.45313 -12.42123 -12.24968 -12.12165 -12.05001 -11.50381 -11.22569 -10.36828 -10.33816 -10.01609 -9.96034 -9.77378 -9.39292 -8.46604 -5.95371 -0.37741 0.04515 1.01861 1.40169 1.42351 1.53020 1.64035 1.87675 2.05432 2.30367 2.60489 2.99110 3.20774 3.43452 3.58493 3.60500 3.86424 3.97125 4.05279 4.09893 4.14368 4.22427 4.31624 4.44819 4.49745 4.54346 4.61648 4.74399 4.82871 4.86939 4.91792 4.97554 5.09941 5.16547 5.23775 5.37561 5.40984 5.61755 5.83540 6.06454 6.31585 6.37081 6.60265 7.04167 7.12713 7.56220 8.11910 8.70343 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.001533 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.620028 B =18258.572736 C =19430.114243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.077 4.077 3 C -0.084 4.084 4 C -0.045 4.045 5 Cl -0.059 7.059 6 C -0.083 4.083 7 C -0.129 4.129 8 C 0.557 3.443 9 O -0.575 6.575 10 N -0.707 5.707 11 C 0.127 3.873 12 C 0.057 3.943 13 N -0.685 5.685 14 C 0.068 3.932 15 C 0.435 3.565 16 O -0.625 6.625 17 N -0.572 5.572 18 C -0.337 4.337 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.070 4.070 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.415 0.585 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.346 0.654 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.019 23.328 -1.039 34.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.078 4.078 3 C -0.103 4.103 4 C -0.071 4.071 5 Cl -0.030 7.030 6 C -0.102 4.102 7 C -0.132 4.132 8 C 0.345 3.655 9 O -0.455 6.455 10 N -0.360 5.360 11 C 0.003 3.997 12 C -0.072 4.072 13 N -0.318 5.318 14 C -0.064 4.064 15 C 0.222 3.778 16 O -0.512 6.512 17 N -0.209 5.209 18 C -0.467 4.467 19 H 0.096 0.904 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.198 1.198 26 C -0.089 4.089 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.178 0.822 31 H 0.172 0.828 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.165 0.835 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.232 0.768 41 H 0.087 0.913 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.560 21.989 -0.357 33.719 hybrid contribution 1.472 0.087 -0.863 1.708 sum -24.089 22.076 -1.220 32.697 Atomic orbital electron populations 1.20911 0.87965 1.04443 1.03901 1.20105 0.98160 0.91185 0.98304 1.21462 0.91797 0.99775 0.97220 1.20874 0.93096 0.87367 1.05813 1.98403 1.77045 1.30602 1.96916 1.21302 1.01246 0.89624 0.98045 1.19728 0.94593 0.91822 1.07065 1.18478 0.82402 0.88839 0.75778 1.90790 1.69253 1.33972 1.51511 1.45654 1.05644 1.10414 1.74303 1.21123 0.90883 0.85390 1.02327 1.22079 0.91062 0.91037 1.03012 1.59898 1.03645 1.16511 1.51774 1.21527 0.87915 0.93343 1.03639 1.20934 0.82554 0.92015 0.82274 1.90504 1.67148 1.36845 1.56697 1.41910 1.05167 1.08838 1.64977 1.19637 0.90047 0.86821 1.50165 0.90407 1.26013 0.96647 1.02233 0.96196 1.69659 1.08385 1.27741 1.50144 0.85001 0.77123 0.77381 0.78901 1.19740 1.19401 1.19845 1.21400 0.92569 0.99408 0.95530 0.89573 0.90660 0.89348 0.82208 0.82802 0.74632 0.91900 0.92063 0.92369 0.88735 0.83493 0.90890 0.87267 0.76847 0.91267 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.01 71.24 0.71 0.04 16 2 C -0.08 -0.85 5.87 -19.90 -0.12 -0.96 16 3 C -0.08 -0.83 9.47 22.35 0.21 -0.62 16 4 C -0.04 -0.53 6.31 22.29 0.14 -0.39 16 5 Cl -0.06 -0.66 28.95 -2.72 -0.08 -0.74 16 6 C -0.08 -1.05 9.32 22.55 0.21 -0.84 16 7 C -0.13 -2.20 5.87 -20.09 -0.12 -2.32 16 8 C 0.56 12.43 7.77 86.79 0.67 13.10 16 9 O -0.57 -17.78 16.35 -3.88 -0.06 -17.84 16 10 N -0.71 -12.39 5.51 -465.96 -2.57 -14.95 16 11 C 0.13 2.75 5.93 86.38 0.51 3.26 16 12 C 0.06 1.13 5.80 86.30 0.50 1.63 16 13 N -0.69 -20.50 6.13 -517.96 -3.17 -23.67 16 14 C 0.07 2.19 6.17 85.56 0.53 2.72 16 15 C 0.43 20.43 7.82 87.66 0.69 21.12 16 16 O -0.63 -34.81 15.78 -3.07 -0.05 -34.86 16 17 N -0.57 -29.03 5.29 -306.99 -1.62 -30.65 16 18 C -0.34 -19.15 9.68 84.04 0.81 -18.34 16 19 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 20 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 21 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 22 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.07 -1.11 9.24 22.53 0.21 -0.90 16 27 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.07 0.44 8.08 -2.39 -0.02 0.42 16 29 H 0.09 0.24 8.08 -2.39 -0.02 0.22 16 30 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 31 H 0.15 1.27 6.40 -2.92 -0.02 1.25 16 32 H 0.42 4.45 6.51 -92.71 -0.60 3.85 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.35 11.09 8.43 -89.69 -0.76 10.33 16 38 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.40 18.95 7.90 -92.70 -0.73 18.22 16 41 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 42 H 0.13 2.31 7.65 -2.91 -0.02 2.29 16 Total: -1.00 -74.38 380.27 -0.81 -75.19 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -1.00 Total: 34.05 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.43 Total: 17.40 kcal Atomic # 7 Polarization: -111.03 SS G_CDS: -7.08 Total: -118.11 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.11 Total: -52.70 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -74.38 -0.81 -75.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131363207.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.767 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds